|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007512 ID=TCONS_00007512|Name=TCONS_00007512|organism=Clytia hemisphaerica|type=transcript|length=1320bp
GCCACTATATCTCAATCAATCTTCTGGTTTGGTAAAATTTGAGCTCATTG
TAAAgaactttaaagaaatttatacTTCTGTACAAAAGATATTAGCAAAC
ATTTCAAACTTGATTTGTTTACCCATGGCTAAATAAGTTTTGGCTGGTTC
ACAAAGCATTTGTCTAAGATAGTTGAAGCGTGCGAATTTCAATTGAATGC
TTCacgatttttgtgaaaatacaCATTTCTATTCGTTTGTTCAACAAATT
TCTGTAGTACTCAGAATACAGAAATTGTAAGTTTCGTAGCAAGCTGAGAC
ACTTATTTGTGAAGACATCTTGTGAAGGTGGTAGACTGGCAAAGATGATT
CATCTGAAATTGGGCATCGCGATTACAATCTTACTGATCGGCTTCTCGCA
AGCTTTTCAATACAGCAGAGCAAAGGATAATTCAACAATCACACCAGATT
CATTTGAGACAGGTCACAAGAAAGGACTTATCACCGGAGCTGCGGTCAGC
TTTGGAATGTCAATGTTGTCGACCATGTTCCTGTCCGCCATGCCCGAAGG
CGCGTCCGCCGAAGGGACCGTCACAAACGATAGCCCGTACGTACTATCGT
TTGACGGATGCGAAGTAGGTGATAGTGATGGTGTGATCACGAAACTTCCA
CAATCTCTACGACCTGGTCAATCATCGACATTTCAAGGGTTTGAAGAGCA
GCTGGCGAACGATTTATGGTTCAAATGCGAATATAAGACGAAAACAAAGG
GAGGTTCTAAGAATGTCAAAATTGTGTTCATGGTCTTTCTTCATATCAAA
GCTCTACGAGAGAAACCGAACCGGTTATCTGTGACCATTTGTGAAGAAGG
AAATTGCGCCGGCAAGGATAGTCTCACGGCACTTTTTAACGGTCGAGGCT
CACAACAAGAGCTATACGATGCATCATCTGAAGCTGGAAAGTATCAGCCT
GTATTCCATTGTGTTCCCAGTCTTGATGTTTGTGTGTCAGGGACAATGGG
TAGCGCCCAAAAAACTGTGGTTACATTGACTGTGATGGATAAAGACGGAT
GGAAATATTAATTTTTATATAGTGTTACTTATGTGCTTTTATTGAGAACC
ATAAACTTATTCTGACGTCGAagtgatgtttttaaaaaataaccTGTATA
ATAACCTGACTATTCTGGTGTGATCTTCTACAGTgtgttccaaaaaaaaa
aaggggggggggcaaatttTACATAAAGTAAAATCCTGAAAACTCATTAT
ATAAAGTGGGTTTAGAATGATTGAAATAAGATTATAATTCGTTGTTCAAT
CAATTGATTTTCAATTCCCC Run BLAST on NCBI protein sequence of TCONS_00007512-protein >TCONS_00007512-protein ID=TCONS_00007512-protein|Name=TCONS_00007512-protein|organism=Clytia hemisphaerica|type=polypeptide|length=238bp
MIHLKLGIAITILLIGFSQAFQYSRAKDNSTITPDSFETGHKKGLITGAA
VSFGMSMLSTMFLSAMPEGASAEGTVTNDSPYVLSFDGCEVGDSDGVITK
LPQSLRPGQSSTFQGFEEQLANDLWFKCEYKTKTKGGSKNVKIVFMVFLH
IKALREKPNRLSVTICEEGNCAGKDSLTALFNGRGSQQELYDASSEAGKY
QPVFHCVPSLDVCVSGTMGSAQKTVVTLTVMDKDGWKY Run BLAST on NCBI transcript from alignment at sc0000077:229422..230741 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007512 ID=TCONS_00007512|Name=TCONS_00007512|organism=Clytia hemisphaerica|type=transcript|length=1320bp|location=Sequence derived from alignment at sc0000077:229422..230741 (Clytia hemisphaerica)
GGGGAATTGAAAATCAATTGATTGAACAACGAATTATAATCTTATTTCAA
TCATTCTAAACCCACTTTATATAATGAGTTTTCAGGATTTTACTTTATGT
AaaatttgcccccccccctttttttttttggaacacACTGTAGAAGATCA
CACCAGAATAGTCAGGTTATTATACAggttattttttaaaaacatcactT
CGACGTCAGAATAAGTTTATGGTTCTCAATAAAAGCACATAAGTAACACT
ATATAAAAATTAATATTTCCATCCGTCTTTATCCATCACAGTCAATGTAA
CCACAGTTTTTTGGGCGCTACCCATTGTCCCTGACACACAAACATCAAGA
CTGGGAACACAATGGAATACAGGCTGATACTTTCCAGCTTCAGATGATGC
ATCGTATAGCTCTTGTTGTGAGCCTCGACCGTTAAAAAGTGCCGTGAGAC
TATCCTTGCCGGCGCAATTTCCTTCTTCACAAATGGTCACAGATAACCGG
TTCGGTTTCTCTCGTAGAGCTTTGATATGAAGAAAGACCATGAACACAAT
TTTGACATTCTTAGAACCTCCCTTTGTTTTCGTCTTATATTCGCATTTGA
ACCATAAATCGTTCGCCAGCTGCTCTTCAAACCCTTGAAATGTCGATGAT
TGACCAGGTCGTAGAGATTGTGGAAGTTTCGTGATCACACCATCACTATC
ACCTACTTCGCATCCGTCAAACGATAGTACGTACGGGCTATCGTTTGTGA
CGGTCCCTTCGGCGGACGCGCCTTCGGGCATGGCGGACAGGAACATGGTC
GACAACATTGACATTCCAAAGCTGACCGCAGCTCCGGTGATAAGTCCTTT
CTTGTGACCTGTCTCAAATGAATCTGGTGTGATTGTTGAATTATCCTTTG
CTCTGCTGTATTGAAAAGCTTGCGAGAAGCCGATCAGTAAGATTGTAATC
GCGATGCCCAATTTCAGATGAATCATCTTTGCCAGTCTACCACCTTCACA
AGATGTCTTCACAAATAAGTGTCTCAGCTTGCTACGAAACTTACAATTTC
TGTATTCTGAGTACTACAGAAATTTGTTGAACAAACGAATAGAAATGtgt
attttcacaaaaatcgtGAAGCATTCAATTGAAATTCGCACGCTTCAACT
ATCTTAGACAAATGCTTTGTGAACCAGCCAAAACTTATTTAGCCATGGGT
AAACAAATCAAGTTTGAAATGTTTGCTAATATCTTTTGTACAGAAgtata
aatttctttaaagttcTTTACAATGAGCTCAAATTTTACCAAACCAGAAG
ATTGATTGAGATATAGTGGC Coding sequence (CDS) from alignment at sc0000077:229422..230741 >TCONS_00007512 ID=TCONS_00007512|Name=TCONS_00007512|organism=Clytia hemisphaerica|type=CDS|length=717bp|location=Sequence derived from alignment at sc0000077:229422..230741 (Clytia hemisphaerica)
TTAATATTTCCATCCGTCTTTATCCATCACAGTCAATGTAACCACAGTTT
TTTGGGCGCTACCCATTGTCCCTGACACACAAACATCAAGACTGGGAACA
CAATGGAATACAGGCTGATACTTTCCAGCTTCAGATGATGCATCGTATAG
CTCTTGTTGTGAGCCTCGACCGTTAAAAAGTGCCGTGAGACTATCCTTGC
CGGCGCAATTTCCTTCTTCACAAATGGTCACAGATAACCGGTTCGGTTTC
TCTCGTAGAGCTTTGATATGAAGAAAGACCATGAACACAATTTTGACATT
CTTAGAACCTCCCTTTGTTTTCGTCTTATATTCGCATTTGAACCATAAAT
CGTTCGCCAGCTGCTCTTCAAACCCTTGAAATGTCGATGATTGACCAGGT
CGTAGAGATTGTGGAAGTTTCGTGATCACACCATCACTATCACCTACTTC
GCATCCGTCAAACGATAGTACGTACGGGCTATCGTTTGTGACGGTCCCTT
CGGCGGACGCGCCTTCGGGCATGGCGGACAGGAACATGGTCGACAACATT
GACATTCCAAAGCTGACCGCAGCTCCGGTGATAAGTCCTTTCTTGTGACC
TGTCTCAAATGAATCTGGTGTGATTGTTGAATTATCCTTTGCTCTGCTGT
ATTGAAAAGCTTGCGAGAAGCCGATCAGTAAGATTGTAATCGCGATGCCC
AATTTCAGATGAATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007512-exon-sc0000077-1491911889:229422..230741 | TCONS_00007512-exon-sc0000077-1491911889:229422..230741 | Clytia hemisphaerica | exon |
| TCONS_00007512-exon-sc0000077-1510915933:229422..230741 | TCONS_00007512-exon-sc0000077-1510915933:229422..230741 | Clytia hemisphaerica | exon |
| TCONS_00007512-exon-sc0000077-1575043694:229422..230741 | TCONS_00007512-exon-sc0000077-1575043694:229422..230741 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000077 | supercontig | sc0000077:229422..230741 . |
Blast
The following BLAST results are available for this feature:
|
