TCONS_00007507 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007507
Unique NameTCONS_00007507
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length702

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007507 ID=TCONS_00007507|Name=TCONS_00007507|organism=Clytia hemisphaerica|type=transcript|length=702bp
ATGACTTTATATTATCATGTTCATGGATACGTCAATACGTTAAGAACTGT
CGTGTACATAACAGTTTTGATTTCGATAGCAATCACCGGCTAGTGATAGC
TGATATGAACACTCCGTGCACAAAAGCAGCCAGATTCCGAAAGAGACATA
TGAAAGCTAATGCAAAACACTTAGATCTATCAGCCCTTCAAAACGAAAAT
ATAGCAGCGAATGTACGAAATGAAAGCATCAATAAACTTACCACAATTGA
ACTAGATCGAGATAACAATACTTTGAACTCAGCATTTGTTAATTCGTTGA
ATGAAGCTGCAAAAAGTATATTACCGCAAAAAACTAACACAAAACTTTAT
CAGCCATGGCATGATGACGAGAAATTGAAACAGCTTTACCAGGAAAAAGA
TGAGCTTTTAGCTAAATTTCCAGATTCCAATAAACTGAAggcaatgaaaa
agaaaatccgTTTAAGGACTAGATTTCTTCGTAATGAATACCTTAAACAC
GAAGTTGAAAAGCTTAATCAACTGGCCATCAACCGTGAATTAGAGAAACT
ATTCCACAGAGCCAAACAACAAGGAAAGACACTCAAATCCTTAAACCACT
CATGCGACGCTCAAAAGCTTGCTGATCATTTCAAATCACATTTCAACCCG
ACCGATCACTTTGGTCCAACCTCACCTGAACTTGAAAGAGATAACCTACC
TT
Run BLAST on NCBI

protein sequence of TCONS_00007507-protein

>TCONS_00007507-protein ID=TCONS_00007507-protein|Name=TCONS_00007507-protein|organism=Clytia hemisphaerica|type=polypeptide|length=233bp
DFILSCSWIRQYVKNCRVHNSFDFDSNHRLVIADMNTPCTKAARFRKRHM
KANAKHLDLSALQNENIAANVRNESINKLTTIELDRDNNTLNSAFVNSLN
EAAKSILPQKTNTKLYQPWHDDEKLKQLYQEKDELLAKFPDSNKLKAMKK
KIRLRTRFLRNEYLKHEVEKLNQLAINRELEKLFHRAKQQGKTLKSLNHS
CDAQKLADHFKSHFNPTDHFGPTSPELERDNLP
Run BLAST on NCBI

transcript from alignment at sc0000077:34390..35091

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007507 ID=TCONS_00007507|Name=TCONS_00007507|organism=Clytia hemisphaerica|type=transcript|length=702bp|location=Sequence derived from alignment at sc0000077:34390..35091 (Clytia hemisphaerica)
AAGGTAGGTTATCTCTTTCAAGTTCAGGTGAGGTTGGACCAAAGTGATCG
GTCGGGTTGAAATGTGATTTGAAATGATCAGCAAGCTTTTGAGCGTCGCA
TGAGTGGTTTAAGGATTTGAGTGTCTTTCCTTGTTGTTTGGCTCTGTGGA
ATAGTTTCTCTAATTCACGGTTGATGGCCAGTTGATTAAGCTTTTCAACT
TCGTGTTTAAGGTATTCATTACGAAGAAATCTAGTCCTTAAAcggatttt
ctttttcattgccTTCAGTTTATTGGAATCTGGAAATTTAGCTAAAAGCT
CATCTTTTTCCTGGTAAAGCTGTTTCAATTTCTCGTCATCATGCCATGGC
TGATAAAGTTTTGTGTTAGTTTTTTGCGGTAATATACTTTTTGCAGCTTC
ATTCAACGAATTAACAAATGCTGAGTTCAAAGTATTGTTATCTCGATCTA
GTTCAATTGTGGTAAGTTTATTGATGCTTTCATTTCGTACATTCGCTGCT
ATATTTTCGTTTTGAAGGGCTGATAGATCTAAGTGTTTTGCATTAGCTTT
CATATGTCTCTTTCGGAATCTGGCTGCTTTTGTGCACGGAGTGTTCATAT
CAGCTATCACTAGCCGGTGATTGCTATCGAAATCAAAACTGTTATGTACA
CGACAGTTCTTAACGTATTGACGTATCCATGAACATGATAATATAAAGTC
AT

Coding sequence (CDS) from alignment at sc0000077:34390..35091

>TCONS_00007507 ID=TCONS_00007507|Name=TCONS_00007507|organism=Clytia hemisphaerica|type=CDS|length=699bp|location=Sequence derived from alignment at sc0000077:34390..35091 (Clytia hemisphaerica)
AGGTAGGTTATCTCTTTCAAGTTCAGGTGAGGTTGGACCAAAGTGATCGG
TCGGGTTGAAATGTGATTTGAAATGATCAGCAAGCTTTTGAGCGTCGCAT
GAGTGGTTTAAGGATTTGAGTGTCTTTCCTTGTTGTTTGGCTCTGTGGAA
TAGTTTCTCTAATTCACGGTTGATGGCCAGTTGATTAAGCTTTTCAACTT
CGTGTTTAAGGTATTCATTACGAAGAAATCTAGTCCTTAAAcggattttc
tttttcattgccTTCAGTTTATTGGAATCTGGAAATTTAGCTAAAAGCTC
ATCTTTTTCCTGGTAAAGCTGTTTCAATTTCTCGTCATCATGCCATGGCT
GATAAAGTTTTGTGTTAGTTTTTTGCGGTAATATACTTTTTGCAGCTTCA
TTCAACGAATTAACAAATGCTGAGTTCAAAGTATTGTTATCTCGATCTAG
TTCAATTGTGGTAAGTTTATTGATGCTTTCATTTCGTACATTCGCTGCTA
TATTTTCGTTTTGAAGGGCTGATAGATCTAAGTGTTTTGCATTAGCTTTC
ATATGTCTCTTTCGGAATCTGGCTGCTTTTGTGCACGGAGTGTTCATATC
AGCTATCACTAGCCGGTGATTGCTATCGAAATCAAAACTGTTATGTACAC
GACAGTTCTTAACGTATTGACGTATCCATGAACATGATAATATAAAGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004237XLOC_004237Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007507-proteinTCONS_00007507-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007507-exon-sc0000077-1491911889:34390..35091TCONS_00007507-exon-sc0000077-1491911889:34390..35091Clytia hemisphaericaexon
TCONS_00007507-exon-sc0000077-1510915933:34390..35091TCONS_00007507-exon-sc0000077-1510915933:34390..35091Clytia hemisphaericaexon
TCONS_00007507-exon-sc0000077-1575043694:34390..35091TCONS_00007507-exon-sc0000077-1575043694:34390..35091Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000077supercontigsc0000077:34390..35091 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.287852	0.280701	0.325921	0.239147	1.16455	0.306748	1.11024	0.952775	0.727702	0.751147	0.801989	0.431342	0.287162	0.0994068	1.06244	4.91145	1.56665	1.43965	2.29495	1.04065	3.131	4.58158	1.56772	1.65032	1.77706	0.896425	1.18411	0.421237	2.15658	1.46481
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007507 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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