TCONS_00007506 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007506
Unique NameTCONS_00007506
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length523

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007506 ID=TCONS_00007506|Name=TCONS_00007506|organism=Clytia hemisphaerica|type=transcript|length=523bp
AATTGAGCACCAACTAAAACTCTTGAAAAATAATAAGGCAAGCAATGATA
TTGCTCCAGATATTCTCAAAGCCTGCAACCACCCCATAATGAACCAAGTC
ATCCACCGAATGACACTCAATCTGTGGAATAACCTAGACATTGCCGACGC
ATGGGGCAACTCCAAGCTGAAAACCTTATGGAAAAACAAAGGATCCAAGT
CTGACCCCACCAAATACCGAGGAATTAGCATTGGGTCAACGGTCTGTAAA
TTCATAATAAATATTATTCTTGAACGTTTAAGACCGTGGTACGAAACTCA
GTTATCAGACGAGCAGAACGGATTCAGGCAAAATCGTGGCACAACTGACG
GCATCTTCACACTAAAACGAGTCCAACAAATTACCCAAAAGAAGTTGCAA
CCACTGTATCTACTATTTGTTGATCTTACCGCAGCATTCGATCACATCTC
AAGAGACTGGCTGTTTAAATCTATCGAAATGCGTTTTCCTGCTGACCAAT
TTCCTAGACTTGTTACTATACTT
Run BLAST on NCBI

protein sequence of TCONS_00007506-protein

>TCONS_00007506-protein ID=TCONS_00007506-protein|Name=TCONS_00007506-protein|organism=Clytia hemisphaerica|type=polypeptide|length=174bp
IEHQLKLLKNNKASNDIAPDILKACNHPIMNQVIHRMTLNLWNNLDIADA
WGNSKLKTLWKNKGSKSDPTKYRGISIGSTVCKFIINIILERLRPWYETQ
LSDEQNGFRQNRGTTDGIFTLKRVQQITQKKLQPLYLLFVDLTAAFDHIS
RDWLFKSIEMRFPADQFPRLVTIL
Run BLAST on NCBI

transcript from alignment at sc0000077:33798..34320

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007506 ID=TCONS_00007506|Name=TCONS_00007506|organism=Clytia hemisphaerica|type=transcript|length=523bp|location=Sequence derived from alignment at sc0000077:33798..34320 (Clytia hemisphaerica)
AAGTATAGTAACAAGTCTAGGAAATTGGTCAGCAGGAAAACGCATTTCGA
TAGATTTAAACAGCCAGTCTCTTGAGATGTGATCGAATGCTGCGGTAAGA
TCAACAAATAGTAGATACAGTGGTTGCAACTTCTTTTGGGTAATTTGTTG
GACTCGTTTTAGTGTGAAGATGCCGTCAGTTGTGCCACGATTTTGCCTGA
ATCCGTTCTGCTCGTCTGATAACTGAGTTTCGTACCACGGTCTTAAACGT
TCAAGAATAATATTTATTATGAATTTACAGACCGTTGACCCAATGCTAAT
TCCTCGGTATTTGGTGGGGTCAGACTTGGATCCTTTGTTTTTCCATAAGG
TTTTCAGCTTGGAGTTGCCCCATGCGTCGGCAATGTCTAGGTTATTCCAC
AGATTGAGTGTCATTCGGTGGATGACTTGGTTCATTATGGGGTGGTTGCA
GGCTTTGAGAATATCTGGAGCAATATCATTGCTTGCCTTATTATTTTTCA
AGAGTTTTAGTTGGTGCTCAATT

Coding sequence (CDS) from alignment at sc0000077:33798..34320

>TCONS_00007506 ID=TCONS_00007506|Name=TCONS_00007506|organism=Clytia hemisphaerica|type=CDS|length=522bp|location=Sequence derived from alignment at sc0000077:33798..34320 (Clytia hemisphaerica)
AAGTATAGTAACAAGTCTAGGAAATTGGTCAGCAGGAAAACGCATTTCGA
TAGATTTAAACAGCCAGTCTCTTGAGATGTGATCGAATGCTGCGGTAAGA
TCAACAAATAGTAGATACAGTGGTTGCAACTTCTTTTGGGTAATTTGTTG
GACTCGTTTTAGTGTGAAGATGCCGTCAGTTGTGCCACGATTTTGCCTGA
ATCCGTTCTGCTCGTCTGATAACTGAGTTTCGTACCACGGTCTTAAACGT
TCAAGAATAATATTTATTATGAATTTACAGACCGTTGACCCAATGCTAAT
TCCTCGGTATTTGGTGGGGTCAGACTTGGATCCTTTGTTTTTCCATAAGG
TTTTCAGCTTGGAGTTGCCCCATGCGTCGGCAATGTCTAGGTTATTCCAC
AGATTGAGTGTCATTCGGTGGATGACTTGGTTCATTATGGGGTGGTTGCA
GGCTTTGAGAATATCTGGAGCAATATCATTGCTTGCCTTATTATTTTTCA
AGAGTTTTAGTTGGTGCTCAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004236XLOC_004236Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007506-exon-sc0000077-1491911889:33798..34320TCONS_00007506-exon-sc0000077-1491911889:33798..34320Clytia hemisphaericaexon
TCONS_00007506-exon-sc0000077-1510915933:33798..34320TCONS_00007506-exon-sc0000077-1510915933:33798..34320Clytia hemisphaericaexon
TCONS_00007506-exon-sc0000077-1575043694:33798..34320TCONS_00007506-exon-sc0000077-1575043694:33798..34320Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007506-proteinTCONS_00007506-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000077supercontigsc0000077:33798..34320 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.220359	0.196703	0.375476	0.234281	0.240807	0.290524	0.964261	0.227274	0.32806	1.18718	0.76977	0.375719	0.234113	0.748129	2.29498	0.842039	0.812536	1.01627	0.805304	1.8002	1.86003	1.17928	0.97181	0.654776	0.23294	0	0.254229	0.892934	0.745399
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007506 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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