TCONS_00007501 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007501
Unique NameTCONS_00007501
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length743

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007501 ID=TCONS_00007501|Name=TCONS_00007501|organism=Clytia hemisphaerica|type=transcript|length=743bp
TTTGGTATTAGAATACTTTTGGTAATGGTTGCAATTGTTCCTGGGTGGGC
CCATCTAATTCCTGAAGATATTAAGGAGGATGTAGTAGCCCATAGGTCTG
CAAGTCGTGAATGAATATGGCGATCGAGCGTTAACAATTTTCCTTGTGTT
CCCCACTTGAAACCGAGATGTTTGAGTTCTTTTTGTAGTGGTATGCTTAC
GTTTTCCAATATGACTTTTGGATCAGGGATTGGGCTTGTTCCCAAAATGA
CAAAttgagtttttgttttgttgaattttAGACCATGATCCTTTCCGAAT
TCTACACATTTATCTAACATCTGCTGTAGTTGTTTGAGGGTGGGACTGAG
TAAAATAATGTCATCAGCAAATGCCACGACCGATGTATTTATACCTCCAG
GGAGTCTGGTCCCAATGTTCATGTTCTGTATGTCCTGGATTAGTTTTTCG
GTGTAGTGGTTATAGAGAAACGGAGACAGGATTGATCCCTGCCTGACTCC
TTGGGGGAGAATGTGAATTTGTCTGAATATTCATTTCTGTATCTGATGGT
AGCGTCTCCTTGTTGgtataattttatcaaaaatttaagCACAACATTTG
GAACGGTTGATTTTTCGTACAGAGATGTAAATAACTTGAGCCAATTACAG
GTATCAAAGGCTTTCTCTGCGTCTAGACTACATAGATATACAGGTGTATG
TTCTTGGTtgtatttttgaattgtttCTTTTATGAATAGTTCG
Run BLAST on NCBI

protein sequence of TCONS_00007501-protein

>TCONS_00007501-protein ID=TCONS_00007501-protein|Name=TCONS_00007501-protein|organism=Clytia hemisphaerica|type=polypeptide|length=140bp
MNIGTRLPGGINTSVVAFADDIILLSPTLKQLQQMLDKCVEFGKDHGLKF
NKTKTQFVILGTSPIPDPKVILENVSIPLQKELKHLGFKWGTQGKLLTLD
RHIHSRLADLWATTSSLISSGIRWAHPGTIATITKSILIP
Run BLAST on NCBI

transcript from alignment at sc0000077:3255..3997

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007501 ID=TCONS_00007501|Name=TCONS_00007501|organism=Clytia hemisphaerica|type=transcript|length=743bp|location=Sequence derived from alignment at sc0000077:3255..3997 (Clytia hemisphaerica)
CGAACTATTCATAAAAGaaacaattcaaaaatacaACCAAGAACATACAC
CTGTATATCTATGTAGTCTAGACGCAGAGAAAGCCTTTGATACCTGTAAT
TGGCTCAAGTTATTTACATCTCTGTACGAAAAATCAACCGTTCCAAATGT
TGTGcttaaatttttgataaaattatacCAACAAGGAGACGCTACCATCA
GATACAGAAATGAATATTCAGACAAATTCACATTCTCCCCCAAGGAGTCA
GGCAGGGATCAATCCTGTCTCCGTTTCTCTATAACCACTACACCGAAAAA
CTAATCCAGGACATACAGAACATGAACATTGGGACCAGACTCCCTGGAGG
TATAAATACATCGGTCGTGGCATTTGCTGATGACATTATTTTACTCAGTC
CCACCCTCAAACAACTACAGCAGATGTTAGATAAATGTGTAGAATTCGGA
AAGGATCATGGTCTaaaattcaacaaaacaaaaactcaaTTTGTCATTTT
GGGAACAAGCCCAATCCCTGATCCAAAAGTCATATTGGAAAACGTAAGCA
TACCACTACAAAAAGAACTCAAACATCTCGGTTTCAAGTGGGGAACACAA
GGAAAATTGTTAACGCTCGATCGCCATATTCATTCACGACTTGCAGACCT
ATGGGCTACTACATCCTCCTTAATATCTTCAGGAATTAGATGGGCCCACC
CAGGAACAATTGCAACCATTACCAAAAGTATTCTAATACCAAA

Coding sequence (CDS) from alignment at sc0000077:3255..3997

>TCONS_00007501 ID=TCONS_00007501|Name=TCONS_00007501|organism=Clytia hemisphaerica|type=CDS|length=420bp|location=Sequence derived from alignment at sc0000077:3255..3997 (Clytia hemisphaerica)
ATGAACATTGGGACCAGACTCCCTGGAGGTATAAATACATCGGTCGTGGC
ATTTGCTGATGACATTATTTTACTCAGTCCCACCCTCAAACAACTACAGC
AGATGTTAGATAAATGTGTAGAATTCGGAAAGGATCATGGTCTaaaattc
aacaaaacaaaaactcaaTTTGTCATTTTGGGAACAAGCCCAATCCCTGA
TCCAAAAGTCATATTGGAAAACGTAAGCATACCACTACAAAAAGAACTCA
AACATCTCGGTTTCAAGTGGGGAACACAAGGAAAATTGTTAACGCTCGAT
CGCCATATTCATTCACGACTTGCAGACCTATGGGCTACTACATCCTCCTT
AATATCTTCAGGAATTAGATGGGCCCACCCAGGAACAATTGCAACCATTA
CCAAAAGTATTCTAATACCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004231XLOC_004231Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007501-proteinTCONS_00007501-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007501-exon-sc0000077-1491911889:3255..3997TCONS_00007501-exon-sc0000077-1491911889:3255..3997Clytia hemisphaericaexon
TCONS_00007501-exon-sc0000077-1510915933:3255..3997TCONS_00007501-exon-sc0000077-1510915933:3255..3997Clytia hemisphaericaexon
TCONS_00007501-exon-sc0000077-1575043694:3255..3997TCONS_00007501-exon-sc0000077-1575043694:3255..3997Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000077supercontigsc0000077:3255..3997 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.597939	0.259149	0.90269	0.441571	2.23987	1.34518	1.70832	1.19948	0.783801	0.693474	1.00965	0.884943	1.10464	1.33073	0.67906	0.607279	0.498745	0.357839	0.0706248	0.295615	0.385415	0.469979	0.152352	0.346276	2.21127	1.59154	0.0910993	0.0972236	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007501 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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