|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007498 ID=TCONS_00007498|Name=TCONS_00007498|organism=Clytia hemisphaerica|type=transcript|length=3334bp
ACCATATGTTAGTTTACAAACTATCAGATGTGATATGGAATCTAACTTCA
GCTGACAGTAGCGTCAACCTGAATCAAAAGAACTGTGTTGTTCCTgaaga
agtttttgaaaaaagtaataatGTCGATGCCAACGTCAATATACCTTTTG
TTGATGTGCAGAGAAGTGGTAAGAAAAGAAATCGTAGAGCAGTGGCAACC
GTAAAGAATGTCTGCAGTCTAACTCTCGTTGCTGATtaccaattttttaa
aaatattggaGGAGGTGACAAAATGAGCACATTGAATTATATGATACAGG
TGGTCTCTCGTGTTCATCAGATCTACAGGAGTACCAATTTTGACGGGATT
GGTATTAATATTGGATTCAAGGTGGAGAAGGTTATCATCCATGAAAGCTT
CAGTAAAGATTACCAGCACAGTTACAACAGGGCAATAGACGGTGGTAAAG
TATGGAATGTTGACCAGCTACTTACAGTATTCAGTCGTACAAATTTCGAT
GCAAAATGTCTATCTCATTTATTCACTTATCAAGATTTTGATAATGGTAT
CATTGGCCTAGCTTATGTAGCAAGTGCTTCGGACTATGAAGTAGGAGGCA
TCTGTACACGGTCTTATCGTGATCATGGTGGTCCACGATACTTGAATTGT
GGTTTGAGCAGCAGTGTCAACTGGGGGAGGCGTCTCCTTACTGCAGAGGC
AGATTTAGTTACAGCTCATGAAATTGGACATAATTTTGGCTCCAATCATG
ATCCAATTAGTTGTCAAAATAGCGGTGATGCTGGTAATTATATCATGTAT
GCACATTCAGTGTCTGGTGAGAAAGAGAACAATAATAAGTTTTCGAAATG
CAGTCGACATTCAATGGGATTGGTGTTGAAATCTAAACGTCATAAATGCT
TCTCTGAACAAACTGAGGATGCTTTTTGTGGGAATCTCATAGTAGAGAAG
GGTGAGGAATGCGATAGCGGCTTGGTGAAACCGTTAGATGATTGCTGTGA
CAGAGATTGCAAATTCAAGAAAGATCCCAAAACTAATAAACCCTTTGTTT
GTAGTGATTCCCACGATCCATGTTGTGATCAATGCAGGCTTGCACCATCT
ACAAAAGTTTGCCGTAAAGCTTCCCAGTTCTATTGTTATGGAGAGACCAA
ATGCAGTGGCGCAAGTAAGTCCTGTCCTGACGCACCTGGTCTGGATGGTC
GAGAAGATTGTGGTTTTAGTATGGGGAATTGTATCCAAGGGAATTGCACC
TCAATGTGTCAACAAAAAGGAAAGATTTCATGTCCATGTTCAGCTGGTCC
TGATAGTTGTAAGATTTGCTGCAAAGATTCTGCTGATGGTGATTGTGTCA
AACTGGTTGAGGATCTGGACGAAGCAAATGGAATCGTATGCGAGCTTACA
AGTGAAAAAGGGAAATGTGTTGATGGTGCCTGCATAAAGAATGTTAAAGA
TGTCAGAGATGAATTCAGTgggcttttcgaagatttctcTTTTAGTAAAT
TTGTGAAATTCATGGAAGATAACATAGTTGGCACTATCATAACTTTATCT
TTGTTCTTATGGATACCAGCATCATGTGCAGTGTATTACATCGATAAAAA
ACATAATGACGAGCAAACTTTCATGACTATATGGAAACATCCAGAGAACA
AGGAGTTGATACCGAAAACCATGCCCGGTAAGCTGAGAAACCTTTTCCGT
AGTAGTAAACGTTCTAAACAGCCGGTACGAACACAATATCATATCACCAG
TTAATATTTTTCATGCATCTTATTTAGATTTTCTGGTTGGTAATAAATCA
GTTGCTCGATTTTGCCAACTTCATGCATAGAAGGAGGggcattttttatg
attttttgacaGCCTTCATTACGTATTGGCACCTTTTTACTATCAAATAT
CATCtctgaatttcatttttatgtagATTGTGCACATTTGGCGAAATTTT
TGACATAGTTGTTTTCTTTGAATATGTATGGTTGCAAGAACATTTTTTGA
TTAGCAAAAGTCAACCAACTTTTGAAGGCCTAGTAGTTAGAATATTCCTT
TTTGATACTTCTGAAAATACCATTTTAAGTCCTGCATAATGATAAAACAA
TGCTAATAGAAAGATTTCTGATGACATCATTTGTTTACATtacattttgt
tttcaatttctttgttaTTTAGAATGAATTACAATACAATGTGCTCATCT
GAGCAGGCAATTGCAAACAAAGTTTTTAAACAAATAATAATGTTATCAGA
AATCCATCTATTCTTATGAATTAAGTATGACACTGTGGATAAGTTATAAA
ATATTAGCACATACAAAAGGGTAAACAAAATGTTAATCTTTTTTGTACCG
TTGAGTTTTTTTACACGACTTGTAAAGATTGTAAATAGTCACTCATAATA
TATTGCttattttgtttataatttcTGTAGTCTAAAAGAAGTCAGTGCTT
GTTTTTGGGCTTTTCCAGGAAGAATTTTTACCCCCGCTGTTCAGGATATT
GATTTTCGAactatcgaaccccctggatatcctactttattagtaaaggc
CCCCTGGATAtacactcttaaaaatatgctcaaccccctggaagATGCTT
ACCCCAtagatatcgtattttttacttgaaaagacactttaccccctgga
tatcacTCCCTTGTatatatttaaccccctggatattacttttgaacaaa
aatcgttaaccccctggatatccgatatcctcaacaggcacagattattt
ttggaaaagcccatttacctttttaaagacattctagtgaccgtagtgca
gtggtagagcacaAAGTCACGTTCAATCCTCGGCAGGGTCATACCAAAAA
CTATGTACTTAGTACAAAAATGGTACTTCGAAATTCATGCTGCTACTAAA
AGCTCGCCTTCTTAAAGACTACaaatatattattttcttttgtagATTGA
AAATTTAGTATGTAGTATAATTATATAGGAAAAAGGTTgttctatttttt
gtttttcttctaatGGTAGATAATTTATCATTTCAATATTCTTgttttgt
agtttttttttgTAGGTATACCTGACAGGTTGGCCATGGATAATTTTCAG
GCTTGCAATAAGCGTAAATTTCTTCCTGAACCACAGTTTAACCATTTTGA
ACGGCTTTAGCTCATGATGTGGCTTGAGTCCTCATTGATTATCcatttga
cgctctctaatttaaTTCTCAAGgggaatttgattttcaatatAGTATCG
AATAGAAGAGATATTATGAGATTTCTTGTTGACGATGATTTTCattatta
tcgaataatggagtaatagaacatcgaattagag Run BLAST on NCBI transcript from alignment at sc0000077:684980..688838- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007498 ID=TCONS_00007498|Name=TCONS_00007498|organism=Clytia hemisphaerica|type=transcript|length=3859bp|location=Sequence derived from alignment at sc0000077:684980..688838- (Clytia hemisphaerica)
ACCATATGTTAGTTTACAAACTATCAGATGTGATATGGAATCTAACTTCA
GCTGACAGTAGCGTCAACCTGAATCAAAAGAACTGTGTTGTTCCTGAAGA
AGTTTTTGAAAAAAGTAATAATGTCGATGCCAACGTCAATATACCTTTTG
TTGATGTGCAGAGAAGTGGTAAGAAAAGAAATCGTAGAGCAGTGGCAACC
GTAAAGAATGTCTGCAGTCTAACTCTCGTTGCTGATTACCAATTTTTTAA
AAATATTGGAGGAGGTGACAAAATGAGCACATTGAATTATATGATACAGG
TGGTCTCTCGTGTTCATCAGATCTACAGGAGTACCAATTTTGACGGGATT
GGTATTAATATTGGATTCAAGGTGGAGAAGGTTATCATCCATGAAAGCTT
CAGTAAAGATTACCAGCACAGGTTTCTATTTTTGTTTTTTCTTTAAGGGG
TATCAATCGACTGTTTTGTAACAAAAGACAGTATAATCCATATAATACAT
GATTTTTTGCAATCAAGTATAACCCTAAGCTACAAGTGAATCTTGAAACT
TTGACATACAATAAAAAGTTATGCCTTAAAAGATTTATGCCTTGTTTCTG
TTAAAGGTTTGATTCTAGCATTTTTTTTGGTTTTGTGTGACAAATTCTTT
AACATCTATCATTAAATAAAGCCTTCAAGCTTCAAGCTTCAAGCTTGTGT
GAAATCCCCACAGGTTCTTTCTTTATTTGACTTTCTTATCACTTTCTTAT
AATAGACAATATCGGCTTAACGTAAAAACTCAGATTTGACCTCCAAGAAT
TCCCCACAATGCTTTGGGCGGAAAAAAATTCACCTTGAACTTTTTTCCGC
GCAAAGCATTGTGGGCAATCCTCGGAGGTCAAATCTGAGTTTTCACCTTT
AAGCCGATATCGTCTATTGTTTCCTAATCTAACTTGTCCATTTTAGTTAC
AACAGGGCAATAGACGGTGGTAAAGTATGGAATGTTGACCAGCTACTTAC
AGTATTCAGTCGTACAAATTTCGATGCAAAATGTCTATCTCATTTATTCA
CTTATCAAGATTTTGATAATGGTATCATTGGCCTAGCTTATGTAGCAAGT
GCTTCGGACTATGAAGTAGGAGGCATCTGTACACGGTCTTATCGTGATCA
TGGTGGTCCACGATACTTGAATTGTGGTTTGAGCAGCAGTGTCAACTGGG
GGAGGCGTCTCCTTACTGCAGAGGCAGATTTAGTTACAGCTCATGAAATT
GGACATAATTTTGGCTCCAATCATGATCCAATTAGTTGTCAAAATAGCGG
TGATGCTGGTAATTATATCATGTATGCACATTCAGTGTCTGGTGAGAAAG
AGAACAATAATAAGTTTTCGAAATGCAGTCGACATTCAATGGGATTGGTG
TTGAAATCTAAACGTCATAAATGCTTCTCTGAACAAACTGAGGATGCTTT
TTGTGGGAATCTCATAGTAGAGAAGGGTGAGGAATGCGATAGCGGCTTGG
TGAAACCGTTAGATGATTGCTGTGACAGAGATTGCAAATTCAAGAAAGAT
CCCAAAACTAATAAACCCTTTGTTTGTAGTGATTCCCACGATCCATGTTG
TGATCAATGCAGGCTTGCACCATCTACAAAAGTTTGCCGTAAAGCTTCCC
AGTTCTATTGTTATGGAGAGACCAAATGCAGTGGCGCAAGTAAGTCCTGT
CCTGACGCACCTGGTCTGGATGGTCGAGAAGATTGTGGTTTTAGTATGGG
GAATTGTATCCAAGGGAATTGCACCTCAATGTGTCAACAAAAAGGAAAGA
TTTCATGTCCATGTTCAGCTGGTCCTGATAGTTGTAAGATTTGCTGCAAA
GATTCTGCTGATGGTGATTGTGTCAAACTGGTTGAGGATCTGGACGAAGC
AAATGGAATCGTATGCGAGCTTACAAGTGAAAAAGGGAAATGTGTTGATG
GTGCCTGCATAAAGAATGTTAAAGATGTCAGAGATGAATTCAGTGGGCTT
TTCGAAGATTTCTCTTTTAGTAAATTTGTGAAATTCATGGAAGATAACAT
AGTTGGCACTATCATAACTTTATCTTTGTTCTTATGGATACCAGCATCAT
GTGCAGTGTATTACATCGATAAAAAACATAATGACGAGCAAACTTTCATG
ACTATATGGAAACATCCAGAGAACAAGGAGTTGATACCGAAAACCATGCC
CGGTAAGCTGAGAAACCTTTTCCGTAGTAGTAAACGTTCTAAACAGCCGG
TACGAACACAATATCATATCACCAGTTAATATTTTTCATGCATCTTATTT
AGATTTTCTGGTTGGTAATAAATCAGTTGCTCGATTTTGCCAACTTCATG
CATAGAAGGAGGGGCATTTTTTATGATTTTTTGACAGCCTTCATTACGTA
TTGGCACCTTTTTACTATCAAATATCATCTCTGAATTTCATTTTTATGTA
GATTGTGCACATTTGGCGAAATTTTTGACATAGTTGTTTTCTTTGAATAT
GTATGGTTGCAAGAACATTTTTTGATTAGCAAAAGTCAACCAACTTTTGA
AGGCCTAGTAGTTAGAATATTCCTTTTTGATACTTCTGAAAATACCATTT
TAAGTCCTGCATAATGATAAAACAATGCTAATAGAAAGATTTCTGATGAC
ATCATTTGTTTACATTACATTTTGTTTTCAATTTCTTTGTTATTTAGAAT
GAATTACAATACAATGTGCTCATCTGAGCAGGCAATTGCAAACAAAGTTT
TTAAACAAATAATAATGTTATCAGAAATCCATCTATTCTTATGAATTAAG
TATGACACTGTGGATAAGTTATAAAATATTAGCACATACAAAAGGGTAAA
CAAAATGTTAATCTTTTTTGTACCGTTGAGTTTTTTTACACGACTTGTAA
AGATTGTAAATAGTCACTCATAATATATTGCTTATTTTGTTTATAATTTC
TGTAGTCTAAAAGAAGTCAGTGCTTGTTTTTGGGCTTTTCCAGGAAGAAT
TTTTACCCCCGCTGTTCAGGATATTGATTTTCGAACTATCGAACCCCCTG
GATATCCTACTTTATTAGTAAAGGCCCCCTGGATATACACTCTTAAAAAT
ATGCTCAACCCCCTGGAAGATGCTTACCCCATAGATATCGTATTTTTTAC
TTGAAAAGACACTTTACCCCCTGGATATCACTCCCTTGTATATATTTAAC
CCCCTGGATATTACTTTTGAACAAAAATCGTTAACCCCCTGGATATCCGA
TATCCTCAACAGGCACAGATTATTTTTGGAAAAGCCCATTTACCTTTTTA
AAGACATTCTAGTGACCGTAGTGCAGTGGTAGAGCACAAAGTCACGTTCA
ATCCTCGGCAGGGTCATACCAAAAACTATGTACTTAGTACAAAAATGGTA
CTTCGAAATTCATGCTGCTACTAAAAGCTCGCCTTCTTAAAGACTACAAA
TATATTATTTTCTTTTGTAGATTGAAAATTTAGTATGTAGTATAATTATA
TAGGAAAAAGGTTGTTCTATTTTTTGTTTTTCTTCTAATGGTAGATAATT
TATCATTTCAATATTCTTGTTTTGTAGTTTTTTTTTGTAGGTATACCTGA
CAGGTTGGCCATGGATAATTTTCAGGCTTGCAATAAGCGTAAATTTCTTC
CTGAACCACAGTTTAACCATTTTGAACGGCTTTAGCTCATGATGTGGCTT
GAGTCCTCATTGATTATCCATTTGACGCTCTCTAATTTAATTCTCAAGGG
GAATTTGATTTTCAATATAGTATCGAATAGAAGAGATATTATGAGATTTC
TTGTTGACGATGATTTTCATTATTATCGAATAATGGAGTAATAGAACATC
GAATTAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007498-exon-sc0000077-1575043694:688418..688838 | TCONS_00007498-exon-sc0000077-1575043694:688418..688838 | Clytia hemisphaerica | exon |
| TCONS_00007498-exon-sc0000077-1575043694:684980..687892 | TCONS_00007498-exon-sc0000077-1575043694:684980..687892 | Clytia hemisphaerica | exon |
| TCONS_00007498-exon-sc0000077-1510915933:688418..688838 | TCONS_00007498-exon-sc0000077-1510915933:688418..688838 | Clytia hemisphaerica | exon |
| TCONS_00007498-exon-sc0000077-1510915933:684980..687892 | TCONS_00007498-exon-sc0000077-1510915933:684980..687892 | Clytia hemisphaerica | exon |
| TCONS_00007498-exon-sc0000077-1491911889:688418..688838 | TCONS_00007498-exon-sc0000077-1491911889:688418..688838 | Clytia hemisphaerica | exon |
| TCONS_00007498-exon-sc0000077-1491911889:684980..687892 | TCONS_00007498-exon-sc0000077-1491911889:684980..687892 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000077 | supercontig | sc0000077:684980..688838 - |
Blast
BLAST of TCONS_00007498 vs. Swiss-Prot (Human)
Match: ADA17 (Disintegrin and metalloproteinase domain-containing protein 17 OS=Homo sapiens GN=ADAM17 PE=1 SV=1) HSP 1 Score: 320.472 bits (820), Expect = 1.093e-93 Identity = 196/547 (35.83%), Postives = 298/547 (54.48%), Query Frame = 3
Query: 177 RNRRAVATVKNVCSLTLVADYQFFKNIGGGDKMSTLNYMIQVVSRVHQIYRSTNFDGIGIN-IGFKVEKVIIHESFS------KDYQHSYNRAIDGGKVWNVDQLLTVFSRTNFDAK------CLSHLFTYQDFDNGIIGLAYVASASDYEVGGICTRSYRDHGGPR--YLNCGLSSSVNWGRRLLTAEADLVTAHEIGHNFGSNHDPIS----CQNSGDAGNYIMYAHSVSGEKENNNKFSKCSRHSMGLVLKSKRHKCFSEQTEDAFCGNLIVEKGEECDSGLVKPLXXXXXXXXXXXXXPKTNKPFVCSDSHDPCCDQCRLAPSTKVCRKASQFYCYGETKCSGASKSCPDAPGLDGREDCGFSMGNCIQGNCTSMCQQKGKI-SCPCSAGPDSCKICCKDSADGDCVKLVEDLDEANGIVCELTSEKGKC-------VDGACIKNVKDVRDEFSGLFEDFSFSKFVKFMEDNIVGTIITLSLFLWIPASCAVYYIDKKHNDEQTFMTIWKHPENKELIPKTMPGKLRNLFRSSKRSKQPVRTQ 1736
+ R +KN C L +VAD++F++ +G G++ +T NY+I+++ RV IYR+T++D G G ++E++ I +S K Y + + + W+V LL FS FD CL+HLFTYQDFD G +GLAYV S GG+C ++Y G + YLN GL+S+ N+G+ +LT EADLVT HE+GHNFG+ HDP N G Y+MY +VSG+ ENN FS CS+ S+ ++SK +CF E++ + CGN V++GEECD G++ + D D + CSD + PCC C+ + K C++A C G + C+G S CP PG + +G C G C C+++ ++ SC C+ +SCK+CC+D + G CV V D ++ N L KGK ++G C K V+DV + F + S + F KF+ DNIVG+++ SL WIP S V+ +DKK + + ++++ HP N E++ +R + + + P R Q
Sbjct: 213 KRRADPDPMKNTCKLLVVADHRFYRYMGRGEESTTTNYLIELIDRVDDIYRNTSWDNAGFKGYGIQIEQIRILKSPQEVKPGEKHYNMAKSYPNEEKDAWDVKMLLEQFS---FDIAEEASKVCLAHLFTYQDFDMGTLGLAYVGSPRANSHGGVCPKAYYSPVGKKNIYLNSGLTSTKNYGKTILTKEADLVTTHELGHNFGAEHDPDGLAECAPNEDQGGKYVMYPIAVSGDHENNKMFSNCSKQSIYKTIESKAQECFQERS-NKVCGNSRVDEGEECDPGIM-----YLNNDTCCNSDCTLKEGVQCSDRNSPCCKNCQFETAQKKCQEAINATCKGVSYCTGNSSECP-PPGNAEDDTVCLDLGKCKDGKCIPFCEREQQLESCACNETDNSCKVCCRDLS-GRCVPYV-DAEQKN-----LFLRKGKPCTVGFCDMNGKCEKRVQDVIERFWDFIDQLSINTFGKFLADNIVGSVLVFSLIFWIPFSILVHCVDKKLDKQYESLSLF-HPSNVEMLSSMDSASVR-IIKPFPAPQTPGRLQ 740
The following BLAST results are available for this feature:
|
