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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007491 ID=TCONS_00007491|Name=TCONS_00007491|organism=Clytia hemisphaerica|type=transcript|length=2285bpRun BLAST on NCBI protein sequence of TCONS_00007491-protein >TCONS_00007491-protein ID=TCONS_00007491-protein|Name=TCONS_00007491-protein|organism=Clytia hemisphaerica|type=polypeptide|length=295bp MFKSQNRSSFAQQLKNKFSFSSPQRDANRNLNKRTTGVSGDKRMPQIPSPRun BLAST on NCBI transcript from alignment at sc0000077:494284..526128- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007491 ID=TCONS_00007491|Name=TCONS_00007491|organism=Clytia hemisphaerica|type=transcript|length=31845bp|location=Sequence derived from alignment at sc0000077:494284..526128- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000077:494284..526128- >TCONS_00007491 ID=TCONS_00007491|Name=TCONS_00007491|organism=Clytia hemisphaerica|type=CDS|length=7992bp|location=Sequence derived from alignment at sc0000077:494284..526128- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00007491 vs. Swiss-Prot (Human)
Match: AKTIP (AKT-interacting protein OS=Homo sapiens GN=AKTIP PE=1 SV=1) HSP 1 Score: 208.379 bits (529), Expect = 1.618e-60 Identity = 103/228 (45.18%), Postives = 147/228 (64.47%), Query Frame = 3
Query: 252 NNNEYISSYGPLFLEYSIAAEYNHLKKTKIPGVYCIPSYHDPLIWFGVVFIRQGVYQNGVFRFTMTIPPTYPDGDCPSLVFTPPVFHPFIDPTTGALPLARAFGNGWKPNVNHLWQILLYVRRIFYKFDSKDATNPQAAELLLTGSDNYRKKIEGAISEIXXXXXXXXXXXXPHAFRFREWNDDLHQPIKESMMSGKEEPVVKRSFEKPKLSGLSYIEPGTSWIFSKE 935
+ N +SYGP +LEYS+ AE+ + K K+PGVY PSY L+WFGV+FIR G+YQ+GVF+FT+ IP YPDGDCP LVF PVFHP +DPT+G L + RAF W+ N NH+WQ+L+Y RR+FYK D+ NP+AA L ++ K+ ++ LFD +DP+A F WN +H +E M++ K+ ++ + ++GLS+++PG+ FSKE
Sbjct: 62 STNGTHASYGPFYLEYSLLAEFTLVVKQKLPGVYVQPSYRSALMWFGVIFIRHGLYQDGVFKFTVYIPDNYPDGDCPRLVFDIPVFHPLVDPTSGELDVKRAFAK-WRRNHNHIWQVLMYARRVFYKIDTASPLNPEAAVLYEKDIQLFKSKVVDSVKVCTARLFDQPKIEDPYAISFSPWNPSVHDEAREKMLTQKKPE--EQHNKSVHVAGLSWVKPGSVQPFSKE 286 The following BLAST results are available for this feature:
BLAST of TCONS_00007491 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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