|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007482 ID=TCONS_00007482|Name=TCONS_00007482|organism=Clytia hemisphaerica|type=transcript|length=2044bpRun BLAST on NCBI protein sequence of TCONS_00007482-protein >TCONS_00007482-protein ID=TCONS_00007482-protein|Name=TCONS_00007482-protein|organism=Clytia hemisphaerica|type=polypeptide|length=508bp RIFTYRFYGRTRWRKRDSCLIVYQFICELNSCSPSFLERQRQQQNIVNKQRun BLAST on NCBI transcript from alignment at sc0000077:71398..81935- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007482 ID=TCONS_00007482|Name=TCONS_00007482|organism=Clytia hemisphaerica|type=transcript|length=10538bp|location=Sequence derived from alignment at sc0000077:71398..81935- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000077:71398..81935- >TCONS_00007482 ID=TCONS_00007482|Name=TCONS_00007482|organism=Clytia hemisphaerica|type=CDS|length=19851bp|location=Sequence derived from alignment at sc0000077:71398..81935- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00007482 vs. Swiss-Prot (Human)
Match: ATTY (Tyrosine aminotransferase OS=Homo sapiens GN=TAT PE=1 SV=1) HSP 1 Score: 493.812 bits (1270), Expect = 3.630e-168 Identity = 231/405 (57.04%), Postives = 299/405 (73.83%), Query Frame = 2
Query: 299 SRKRKWVVQSSDMAKRTVNPIRRIVDNMKIEPNPNLSTISLSIGDPTIFGNLLPHPNILKAIEESLRSHKNNGYAPAVGQTQARKAIAEYMSVPGAPLTEKDIIITSACSGAIEICLSALANAGDNIVCPRPGFSLYQTIGVSNALDVRFYNLLPEKEWEVDLNNLESQIDEKTKCILVTNPSNPCGSVYSRKHLIDILEVAERHKIPILADEIYAYSVFSGETFYPLASLTTTVPILSCCAISKRFLVPGWRLGWIQIHDRNDVLA-EVRKGLYDLATRILGANSVTQGALPKILSETPKEWFDENLRYIEDNAKLAMDRLSKVNGLEPIQPRGAMYMMVGIDTEVLGTIESDIHFTEQLLANKSVFCLPGTCFKYPNFFRIVLTVPPHMIQEACSRIKEFCEE 1510
RK +W V+ SDMAK+T NPIR IVDNMK++PNPN + ISLSIGDPT+FGNL P + +A++++L S K NGYAP++G +R+ IA Y P APL KD+I+TS CS AI++CL+ LAN G NI+ PRPGFSLY+T+ S ++V+ YNLLPEK WE+DL LE IDEKT C++V NPSNPCGSV+S++HL IL VA R +PILADEIY VFS + PLA+L+T VPILSC ++KR+LVPGWRLGWI IHDR D+ E+R GL L+ RILG ++ QGAL IL TP E++ L +++ NA L L+ + GL P++P GAMY+MVGI+ E E+D+ FTE+L+A +SV CLP TCF+YPNF R+V+TVP M+ EACSRI+EFCE+
Sbjct: 36 GRKARWSVRPSDMAKKTFNPIRAIVDNMKVKPNPNKTMISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKYNGYAPSIGFLSSREEIASYYHCPEAPLEAKDVILTSGCSQAIDLCLAVLANPGQNILVPRPGFSLYKTLAESMGIEVKLYNLLPEKSWEIDLKQLEYLIDEKTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGLAKRWLVPGWRLGWILIHDRRDIFGNEIRDGLVKLSQRILGPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALAAIPGLRPVRPSGAMYLMVGIEMEHFPEFENDVEFTERLVAEQSVHCLPATCFEYPNFIRVVITVPEVMMLEACSRIQEFCEQ 440 The following BLAST results are available for this feature:
BLAST of TCONS_00007482 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.