TCONS_00007480 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007480
Unique NameTCONS_00007480
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1922

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007480 ID=TCONS_00007480|Name=TCONS_00007480|organism=Clytia hemisphaerica|type=transcript|length=1922bp
TCAGATGTGAATCTCCTGTTAAATTGGTTCGTTTTTGCTCCAACAATATG
ATTGGCGACTTACCACATGACATTTACACCaatcaaaattgtttgaaaGT
TCAACTTCATGCCTCTGAGAAAAATTCTTCTCGGCAGACCGGTTTTGTGG
CTTCTTTTGAAGTATTTTCAACAGGATATGCTAACGTTGCTACGCAATGC
AGAAGTGATACAGACTTGCATCGAAAAGCTGGCGTAATTGCTTCACCGAA
ATGGCCAATAGGTTTCACTGGAGATGATTTACCAGATCGCAATAAGGAGT
GTGAATGGGATATCAAAGCAGCCAAGTTGAACGTGATACAAATAAATGTG
ATGGATATCGATTTTGATGGCAGTTCTGATTGCTACAAGAAAAACAGGTT
AAAGTTAACAGGAGAGCATTCAGTTACAAATGATGGTCAAAGTGATGgca
agaaaaacaagaaaaagaagactgTCATTATCGAaggaaaaaatgtgaaa
aagttctGCACAACAGTACAACCATTTACTTGGTCGACAAGTTATTATGA
AATCGAAGTTGAATTCAAAGGTGGTTACTACCAACCTTCAAAAAGACGTG
GATTTATCTTGGGATATGTGCATTACAGGGACGATGAGTTGATTGCTAAA
GTGATACTTGTGATGCAAATAGCTTTGATTGTTGTCGGAATCATCATTGC
TGGTTGTGTGTTATGCTTCGTTAAAAAACGTTGGTGGGATCGAAGACAAA
ATGACCAAACAGCCTCAACAAACGTTCAAGAGAATGCTTCACTAACAGAT
TATGCTGACTGTGAAATGTCGGGCGCCAAATCAGAAGAGACGGTAGCTTT
AAATACTCAAAAGCAATACGTTCAATATGGAAATAGCGAAGGGCCACAAC
AGACTGATGGAATTACTCTCCCTCCATCCATTCTCAATCAGCCGTCATAT
CCGCCAGTGCAGCCTCAACCGCCCTACCCGCCAGCTCAACAACCGCCTTA
TACACCAGCTCAACAACCATTTTACTAAAATTCTAAAACctggaatttta
aaacaaagcaTGTAACTCTataatatctcgactttggaaaagaGTAAAAC
GAAAAGGTGAACAGACTTGGACGTTTCGCTCAGAAATCCTCTGGTATAAT
ATCTCAATCCATTATCTACAAGAAGAAGAAGGCACAATTTCGTTCGCACA
GTTTCGCACACATTCGTTCGCGACTCTTGAAGAAATTATTTTCCTcaaat
ttcggccaaaattATTAGCTTTTGGTGAAAGTTTCCAAATCCTTGGGGAA
GTTACTTCTGAAGTCAAACCTTTTATAGAGACTGAATTGCTTTTTCTTTG
GGGGGTGTTTACCCCTTTGAGGGGCTTGCGAGAATGAAAAAGGGACCTGT
ACCACAATTTTGTCATAGGAGTACCCCAGggcaaaaaaagttttgtattc
aAAAATGCTGTATTCGTAATTGCATTTGTAGATTTTTAGATCCgattttt
tctataatttgaactgtatttataaaaaaaactgtaaaTACACTTTTTAC
TATCATTTAAATATGAACACCcccgtctcacagccccggtggaaattCTT
TCTTCAGTAGAGAATTccaacccagctgacacacaacgttgttttaacgc
tcatctaacgttatatggacgttgtgaacgttagataaacattgaaacaa
cgttgtgtgtcagctgggaatgGGGAAAGATATTTCATTCTTAAAAAAta
atggggatggttttggagtgcaatttttaaacattgaatttcgaatgggg
atgaaatcaaaataaatttccaagtggggctgaaattcaagggtattttc
tcaccggggacgaaatttttgccagattttaAAGTTGGGCTGGAGTAACA
GCAACAAAGAGACAAAGAGGCG
Run BLAST on NCBI

transcript from alignment at sc0000077:59973..65383-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007480 ID=TCONS_00007480|Name=TCONS_00007480|organism=Clytia hemisphaerica|type=transcript|length=5411bp|location=Sequence derived from alignment at sc0000077:59973..65383- (Clytia hemisphaerica)
TCAGATGTGAATCTCCTGTTAAATTGGTTCGTTTTTGCTCCAACAATATG
ATTGGCGACTTACCACATGACATTTACACCAATCAAAATTGTTTGAAAGT
TCAACTTCATGCCTCTGAGAAAAATTCTTCTCGGCAGACCGGTTTTGTGG
CTTCTTTTGAAGTATTTTCAACAGGATATGCTAACGTTGCTACGCAATGC
AGAAGGTAAGAAAGTCTTTTGATTTGAATTTATGAGCCATTTGGGATTTT
GGGATTATCCATTCTTGAAAAAAGGGGGGTCGCAACAAAGTTCTACAGGG
TGTCCCAAAACAAAGTATTGAGCTCGAACATGATTCTGAGTAGAAGGTTG
TTGCGTGTGTTTAACAAAATGTAAATCAATTTTGCTCCATTGTCCCAGTG
ACAAAAGTGAGATATCACTTTTATTGGTAGAAAGAAAAGTGGGGTGGAGA
GACGAGAAAGTGTTTCAGGTTGGTGGGATGGATGATGTTGCATTGCACCA
ACGCGACAAAAACTTATCGTATCCCCAAGCCTTAACCGAAGTCAAAGAGA
TACATCAATCACATAACCCCACACCATAACAATACGAAAAAGGAACCTTG
AACATTGAGCCACCTTGCAATCTTACAATCATCGGCAGATTTGGGATAAC
TCTTGGACGGAAATTTTACACACGACACTATATCTACAATCAGTGCCATA
ACATATTGGCAATTTTGGCTATTTCATCATTTTTCGAAAATTGAAGTTCG
AGCCAGAATGTCAATTTCGGGCCTTCAACTTAATTTCATCGAATATTTCG
ATCTTGGAGGGATTTATTGGTTTCTAGGCTATAATTCAAGCCCTACCGGA
CTATTTTTGAGCTTCTGGATTCTCAGAACCTAAGATTCTAAGTCTAGCGT
TAAAACTCAGAGTTAAAACTTCTACCCTTCCAACCTAATTTAGAGTGCTT
CCAAATTGTTTGTGGTTATAAAATTTCGTTGGGGATTTCCCATTTATGGC
AATTATTTTGGAACTGATTGTAGATAATTTTCAGCTCAAGTTAATTGTAC
CTTTTTTTGCTAGTGATACAGACTTGCATCGAAAAGCTGGCGTAATTGCT
TCACCGAAATGGCCAATAGGTTTCACTGGAGATGATTTACCAGATCGCAA
TAAGGAGTGTGAATGGGATATCAAAGCAGCCAAGTTGAACGTGATACAAA
TAAATGTGATGGATATCGATTTTGATGGCAGTTCTGATTGCTACAAGAAA
AACAGGTTAAAGTTAACAGGTGATTTTTGAGAGCATACACCTTTTCCGAC
CGTAGTTGCGCGGTCAGACGCGTGCCACTTTATCATTTAATCATCCCGCT
AAACTCGATCTGCACACCTTTTTCTATTGTCTATTGGTGCGAAAAAAAAG
ACTGGGACGGTTTTAGGGTTTTAAAACGGACAATAAAATGCCCGTGCAGC
AATTGACGGCTACGGTTGAAAATATGTATTCGCCCTGCTATACATAGTGA
GGGGTTTGGTAATCCAAAAGCACTACGCTTCGCTGTATAAGTGTCATTGG
CTAACCTTAACAAGGTTGGTGGCGAGACCAGTTCTTTTTAATTAAATTTT
TTTTCACCAAAACTGACTAAAAAAGCAAATTTGTGAATTTAATGATATAA
TAAAACCATTCCNTTTTTTTTTCACCAAAAGTGACTAAAAAAGCAAATTT
GTGAATTTAATGATATAATAAAACCTTTCCTATCTGATTGGGTTTTCGTT
AGGTTAGGAACACCCTTGTCTCACTTAGGCTACTGGCATCCACTAACGGA
TTGGTGCCCTTTATACTTCCTGGGGTTTTGTAGATGACTACAATTCAGAT
TGCTGTCTGACAGCCCTGGTCAAAGTTTTGATCTCATCAGTGAGGGTGAA
AATTTCTATCAAAATCCCAATGGGGATGGTTTCGGAGTCCAATTTTCCCA
ATGGGGATGGTTTTGGAGTCCAATTTTTCCATAAAATTTTAAGTGGGAAT
AAAATCAGTGTCAATTTTTCAATGGGGCTGAAATTTCATGGTATTTTCTC
CACGGTGGACAAAATTTTGGGCAAATTTTCCAAAAGTGCTTCAATCCCAG
CGGTCCAGTGAAACAGGGGTGTTAAAGGGACATAAAAGTAGAATGTCATT
AAAGCATTAAAATCACGTGTCCAAAACAAACTTGTAAAACAATTGAAACA
ATCAAAATCAGCCATATTTGTTTTGATTTTTTGATTTTGACACGTGTCAT
TTGTTTTGATTTTGTATCCCGCTGCATACGGTTTGTTTACAAATTTCGTC
AGTACTTTAATATCCCTTTAAAGAAAAAATCTGTCAACTCTTTATTCAGG
AGAGCATTCAGTTACAAATGATGGTCAAAGTGATGGCAAGAAAAACAAGA
AAAAGAAGACTGTCATTATCGAAGGAAAAAATGTGAAAAAGTTCTGCACA
ACAGTACAACCATTTACTTGGTCGACAAGTTATTATGAAATCGAAGTTGA
ATTCAAAGGTGGTTACTACCAACCTTCAAAAAGACGTGGATTTATCTTGG
GATATGTGCATTACAGGGACGGTCAGTGTTAACACTCGCTAATTCGATCT
CGAAAGGGGGGAATATTATTTGTTCGAATTACAATGAGATTCGAATTATA
GAAAGTATTTTATAAGAGGGTTTCTCCAATGAAGTATAAGCCCAAAGGGA
TAGAAGTGAATCTTCAACCTTTCTCAGTCAAGAAAAAGTAAAGCCTTGAA
GTATACGCCATATTTTGAACGACGGATTGAATTTAGCGGTTTCTTTGTTT
TTTTTGAGTCGTATATTTTTTGAAATTTAGCGGAAAATTTCNCGGTTTCT
TTGTTTTTTTTTGAGTGGTATATTTTTTGAAATTTAGCGGAAAATTTCAC
TTTCAATCCGGAATTTGTATTAAAACCACACGGGCTGCTCAAAGGCCGCG
TAACTTAGGTAGGATTAAGAAAGATTCGAATAAAAGAAGTTCGAATAAGT
GAGAGTCTAAAGGTGAAATTTCCCAAATATTCTTGAAGCTTCACAACCAT
CCCCACTGCCACTAAACTTTCCAGGCTTAGAACAATGGAATTTCGATAGT
CTTAATCGCAGACCAATATACTTCCTATATATAAGAAAAGTTTTTCGCTA
CAGGAAGAACATAAGCCTATGATTTCCATTTCCATTTGGATTTCGATAGA
AAAACCTTCAAAGGGGCTATGAGACAGGGGTTTTAACTGAACTGCTTTTT
GAATTCTTAACCAACAGATGAGTTGATTGCTAAAGTGATACTTGTGATGC
AAATAGCTTTGATTGTTGTCGGAATCATCATTGCTGGTTGTGTGTTATGC
TTCGTTAAAAAACGTTGGTGGGATCGAAGACAAAATGACCAAACAGCCTC
AACAAACGTTCAAGAGAATGCTTCACTAACAGATTATGCTGACTGTGAAA
TGTCGGGCGCCAAATCAGAAGAGACGGTAGCTTTAAATACTCAAAAGCAA
TACGTTCAATATGGAAATAGCGAAGGTAAAACCCTTTACGAATAATATAA
ACATATGCTTCTAGTTTTAAGGGCTACTTAGAATGCACAATATATTGACG
AACAATATTTGATAATATAGTTTTCAGGGGGTTTGTACTTTTAGTACGGT
ATTGCAGGATTTGACGATAAAAGGGACGGAAAAGCGGTCTTTTTAAATCA
GACAGTGACGGTGATTAGCCTTGTTTTTTGTCAGTATACCGGTCTTTTAA
CCTATTAAATAGCGCTTCGTCGTGCAAACGTCACTACTATTACTTCTCTC
ATTTGACCGAAATTCAATCCCACAATCCTTTTTGTTTTAATTGAAAAGTC
GTGAAAGTTGTTACTTTTTCTTTGTAATTGATAGTAATTTGTGTGCAAGC
GTAATAAACGCAAAGGTGGACGGGATTGAAATTCGGTCAAACAGAAAAAT
CAATGTCTATTTTTAGATTCGCTACGGTATGCTATTGTTTTCTCAGAAAA
CAGGCAATTAAAGGTTTTGTTTTTAAATAAGAGTGATATCGTTTGCTTAC
TCGTCAATGTTAATTTACAAGCTTTTCACATTAGATTGAAACGAATATGG
AGCAAGATTGATTCGAAAGAGGCCAAGAAAAACATTTTTTTATNTTCACA
TTAGATCGAAACGAATATGGAGCAAGATTGATTCGAAAGAGGCCAAGAAA
AACATTTTTTTATTTATATCAGCACAATATAACAATAGGCAGACACTGTC
ATGATATGAAATATGTGTCTGATATGAAACGGGAACACTTATGTAAAAAT
AAAATCTTTAATAAAAGAGTTGCCGTAGTTATTTATTAACTGATTCCACC
TTTCAGAAATACCACCGCCCCCTTATCCAGGGCCACAACAGACTGATGGA
ATTACTCTCCCTCCATCCATTCTCAATCAGCCGTCATATCCGCCAGTGCA
GCCTCAACCGCCCTACCCGCCAGCTCAACAACCGCCTTATACACCAGCTC
AACAACCATTTTACTAAAATTCTAAAACCTGGAATTTTAAAACAAAGCAT
GTAACTCTATAATATCTCGACTTTGGAAAAGAGTAAAACGAAAAGGTGAA
CAGACTTGGACGTTTCGCTCAGAAATCCTCTGGTATAATATCTCAATCCA
TTATCTACAAGAAGAAGAAGGCACAATTTCGTTCGCACAGTTTCGCACAC
ATTCGTTCGCGACTCTTGAAGAAATTATTTTCCTCAAATTTCGGCCAAAA
TTATTAGCTTTTGGTGAAAGTTTCCAAATCCTTGGGGAAGTTACTTCTGA
AGTCAAACCTTTTATAGAGACTGAATTGCTTTTTCTTTGGGGGGTGTTTA
CCCCTTTGAGGGGCTTGCGAGAATGAAAAAGGGACCTGTACCACAATTTT
GTCATAGGAGTACCCCAGGGCAAAAAAAGTTTTGTATTCAAAAATGCTGT
ATTCGTAATTGCATTTGTAGATTTTTAGATCCGATTTTTTCTATAATTTG
AACTGTATTTATAAAAAAAACTGTAAATACACTTTTTACTATCATTTAAA
TATGAACACCCCCGTCTCACAGCCCCGGTGGAAATTCTTTCTTCAGTAGA
GAATTCCAACCCAGCTGACACACAACGTTGTTTTAACGCTCATCTAACGT
TATATGGACGTTGTGAACGTTAGATAAACATTGAAACAACGTTGTGTGTC
AGCTGGGAATGGGGAAAGATATTTCATTCTTAAAAAATAATGGGGATGGT
TTTGGAGTGCAATTTTTAAACATTGAATTTCGAATGGGGATGAAATCAAA
ATAAATTTCCAAGTGGGGCTGAAATTCAAGGGTATTTTCTCACCGGGGAC
GAAATTTTTGCCAGATTTTAAAGTTGGGCTGGAGTAACAGCAACAAAGAG
ACAAAGAGGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004217XLOC_004217Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007480-exon-sc0000077-1575043694:65179..65383TCONS_00007480-exon-sc0000077-1575043694:65179..65383Clytia hemisphaericaexon
TCONS_00007480-exon-sc0000077-1575043694:64115..64320TCONS_00007480-exon-sc0000077-1575043694:64115..64320Clytia hemisphaericaexon
TCONS_00007480-exon-sc0000077-1575043694:62813..63034TCONS_00007480-exon-sc0000077-1575043694:62813..63034Clytia hemisphaericaexon
TCONS_00007480-exon-sc0000077-1575043694:61859..62116TCONS_00007480-exon-sc0000077-1575043694:61859..62116Clytia hemisphaericaexon
TCONS_00007480-exon-sc0000077-1575043694:59973..61003TCONS_00007480-exon-sc0000077-1575043694:59973..61003Clytia hemisphaericaexon
TCONS_00007480-exon-sc0000077-1510915933:65179..65383TCONS_00007480-exon-sc0000077-1510915933:65179..65383Clytia hemisphaericaexon
TCONS_00007480-exon-sc0000077-1510915933:64115..64320TCONS_00007480-exon-sc0000077-1510915933:64115..64320Clytia hemisphaericaexon
TCONS_00007480-exon-sc0000077-1510915933:62813..63034TCONS_00007480-exon-sc0000077-1510915933:62813..63034Clytia hemisphaericaexon
TCONS_00007480-exon-sc0000077-1510915933:61859..62116TCONS_00007480-exon-sc0000077-1510915933:61859..62116Clytia hemisphaericaexon
TCONS_00007480-exon-sc0000077-1510915933:59973..61003TCONS_00007480-exon-sc0000077-1510915933:59973..61003Clytia hemisphaericaexon
TCONS_00007480-exon-sc0000077-1491911889:65179..65383TCONS_00007480-exon-sc0000077-1491911889:65179..65383Clytia hemisphaericaexon
TCONS_00007480-exon-sc0000077-1491911889:64115..64320TCONS_00007480-exon-sc0000077-1491911889:64115..64320Clytia hemisphaericaexon
TCONS_00007480-exon-sc0000077-1491911889:62813..63034TCONS_00007480-exon-sc0000077-1491911889:62813..63034Clytia hemisphaericaexon
TCONS_00007480-exon-sc0000077-1491911889:61859..62116TCONS_00007480-exon-sc0000077-1491911889:61859..62116Clytia hemisphaericaexon
TCONS_00007480-exon-sc0000077-1491911889:59973..61003TCONS_00007480-exon-sc0000077-1491911889:59973..61003Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000077supercontigsc0000077:59973..65383 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0788225	0.0276369	0	0.0793485	0.0281369	0.0662115	0.186449	0.124867	0	0.198351	0.293798	0.0730436	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.110141	0	0.092483	0.0471259
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007480 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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