|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007475 ID=TCONS_00007475|Name=TCONS_00007475|organism=Clytia hemisphaerica|type=transcript|length=1962bp
GGAactaattgaaaaatatatattttgaccCCCGGAAAGTTTTGACCCAT
GGCAACTGAACACATGAAGATAAGGTCGCCTGTTTAACGTGAATTCAGAT
CGAAATAGGCAGTGAAACACTGACagcataaattttcaaattctaggTGT
TGTAACACGaactaatataatttcaaaatgagaGAAATCGTTCACTTGCA
AGCTGGACAATGCGGTAACCAAATTGGTGCCAAGTTTTGGGAAGTCATCT
CTGATGAACACGGTATCGACCCCACCGGAACCTACCATGGTGATTCAGAT
TTGCAATTAGAAAGAATCAATGTATATTACAATGAGGCCACTGGTGGTAA
ATATGTTCCAAGAGCTGTCCTTGTTGATTTGGAACCTGGAACTATGGATT
CAGTTAGATCAGGACCTTTTGGACAAATTTTTAGACCAGATAATTTCGTT
TTTGGACAATCAGGAGCCGGTAATAACTGGGCTAAAGGACATTATACTGA
AGGTGCAGAGTTAGTAGACTCTGTTTTAGATGTTGTACGTAAAGAAGCTG
AAAGCTGTGACTGTTTACAAGGATTCCAACTTACACACTCCCTTGGTGGA
GGCACTGGATCTGGTATGGGAACACTTCTCATTTCCAAAATCCGTGAGGA
ATACCCTGACAGAATCATGAACACATTCAGTGTTGTCCCATCCCCAAAAG
TCTCTGATACCGTTGTTGAACCATACAATGCTACCTTATCTGTCCATCAA
CTTGTCGAAAATACTGATGAAACCTTTTGTATCGACAACGAGGCCTTATA
CGATATCTGCTTCAGAACCTTGAAATTAACAACACCTACCTATGGAGATC
TCAACCATCTCGTTTCTGCCACCATGAGCGGTGTCACCACCTGTCTCAGA
TTCCCTGGTCAATTGAATGCTGACCTCCGTAAATTAGCTGTCAACATGGT
CCCATTCCCCCGTCTCCATTTCTTCATGCCTGGATTTGCACCATTGACCA
GCCGTGGCTCGCAACAATACCGTGCCTTGACTGTCCCAGAATTGACCCAA
CAAATGTTCGATGCCAAGAACATGATGGCTGCCTGTGATCCACGTCATGG
ACGATACTTGACCGTTGCTGCCATGTTCCGTGGTAGAATGTCAATGAAGG
AAGTTGATGAACAAATGTTGAATGTTCAAAACAAGAACAGCTCATACTTC
GTTGAATGGATTCCAAACAACGTCAAGACCGCTGTCTGTGATATCCCACC
ACGTGGATTGAAGATGTCTGCTACCTTCATTGGTAACAGCACTGCCATCC
AAGAATTGTTCAAACGTATCAGCGAACAATTCACTGCTATGTTCCGAAGA
AAGGCTTTCTTGCATTGGTATACTGGTGAAGGTATGGACGAAATGGAATT
CACCGAAGCTGAATCCAACATGAATGATCTCGTCTCTGAATACCAACAAT
ACCAAGATGCCACTGCTGATGATGAAGGAGAATTcgaagaagaggaagaa
gaagatGCTGAATAAATTATgttctttttaactttttgggatGTCTTTAA
TTGTATTTGTGCTAATTTGAAGACTGACTTTAATTTCTGTAAATAATACT
TTTCTATTCCTGgtatttcatttcttttgaaaacattttcttcttataaa
tcaccttttcattaatttttgtgtttaaaaaataatcttttttgtGAATC
TGAATCTTTAGGGGAAATTTCGACCAACATTTCAGAAAACCGTTTTTCAG
CTTACTTTTTGGAGacactcaatttttttaaggGCTAGTTATTAGTCACc
acaacttgatttttttaacttttcgacttttttgatatatttaaaCTCAT
TTTTTCTGCCCCTCCAGCTAACAAACCTACATGAATCCCTGTCAGAATTC
GACGTCCTTTCCCGATGGTTGGTCTGAACGTTATAAGAAAGTTTAGCCCA
AAAAAAATAATC Run BLAST on NCBI transcript from alignment at sc0000077:666494..669968+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007475 ID=TCONS_00007475|Name=TCONS_00007475|organism=Clytia hemisphaerica|type=transcript|length=3475bp|location=Sequence derived from alignment at sc0000077:666494..669968+ (Clytia hemisphaerica)
GGAactaattgaaaaatatatattttgaccCCCGGAAAGTTTTGACCCAT
GGCAACTGAACACATGAAGATAAGGTCGCCTGTTTAACGTGAATTCAGAT
CGAAATAGGCAGTGAAACACTGACagcataaattttcaaattctaggTGT
TGTAACACGaactaatataatttcaaaatgagaGAAATCGTTCACTTGCA
AGCTGGACAATGCGGTAACCAAATTGGTGCCAAGGTATGTGCCTTTTGTT
TTTTTCCCCCGCTTTTCGTCCTATttttttgtgagtttttgaaTCAATAT
GCATTTTCTGAGATGCttagaaaactaaaaaaacgtCTCTTTACTTTTGT
AGTTTTGGGAAGTCATCTCTGATGAACACGGTATCGACCCCACCGGAACC
TACCATGGTGATTCAGATTTGCAATTAGAAAGAATCAATGTATATTACAA
TGAGGCCACTGGtaagttttgattttcttcatGCCACTCCCACCTAAGGA
TGCTTTATTGCAATAATACGTAATGTTATCTGAGgcttgaaatatcttta
tttaaGTTAACAAGGCAAATTGCATCCTCCTGTCCTGCTTGTGCTTCAGA
CTGATCATTTCTTTTGGAAACATTAGATGAGTCTTCATCAAATAAAGTAA
AGTTACAACGTAATAGGATAAAGTACTAAAGGATAtcaaatttgttcttt
tttcagGTGGTAAATATGTTCCAAGAGCTGTCCTTGTTGATTTGGAACCT
GGAACTATGGATTCAGTTAGATCAGGACCTTTTGGACAAATTTTTAGACC
AGATAATTTCGTTTTTGGACAATCAGGAGCCGGTAATAACTGGGCTAAAG
GACATTATACTGAAGGTGCAGAGTTAGTAGACTCTGTTTTAGATGTTGTA
CGTAAAGAAGCTGAAAGCTGTGACTGTTTACAAGGATTCCAACTTACACA
CTCCCTTGGTGGAGGCACTGGATCTGGTATGGGAACACTTCTCATTTCCA
AAATCCGTGAGGAATACCCTGACAGAATCATGAACACATTCAGTGTTGTC
CCATCCCCAAAAGTCTCTGATACCGTTGTTGAACCATACAATGCTACCTT
ATCTGTCCATCAACTTGTCGAAAATACTGATGAAACCTTTTGTATCGACA
ACGAGGCCTTATACGATATCTGCTTCAGAACCTTGAAATTAACAACACCT
ACCTATGGAGATCTCAACCATCTCGTTTCTGCCACCATGAGCGGTGTCAC
CACCTGTCTCAGATTCCCTGGTCAAGTAAGTATATTTCAAGTGTCTTTAC
ATTGGTGAAGTTATAAGGCTGAGTGAAATAGCTTTCTTACATACCATCAT
AGGAGTGATTTGTTgtgttaattttcatttttagtcaGGTCAAAAACTAA
AGTTAACTATAATTTTGAGAACTTTGATTGGTAAATATCAGTATTAAATA
TATCTCTTACTTGTANATACGTAATGTTATCTGAGgcttgaaatatcttt
atttaaGTTAACAAGGCAAATTGCATCCTCCTGTCCTGCTTGTGCTTCAG
ACTGATCATTTCTTTTGGAAACATTAGATGAGTCTTCATCAAATAAAGTA
AAGTTACAACGTAATAGGATAAAGTACTAAAGGATAtcaaatttgttctt
ttttcagGTGGTAAATATGTTCCAAGAGCTGTCCTTGTTGATTTGGAACC
TGGAACTATGGATTCAGTTAGATCAGGACCTTTTGGACAAATTTTTAGAC
CAGATAATTTCGTTTTTGGACAATCAGGAGCCGGTAATAACTGGGCTAAA
GGACATTATACTGAAGGTGCAGAGTTAGTAGACTCTGTTTTAGATGTTGT
ACGTAAAGAAGCTGAAAGCTGTGACTGTTTACAAGGATTCCAACTTACAC
ACTCCCTTGGTGGAGGCACTGGATCTGGTATGGGAACACTTCTCATTTCC
AAAATCCGTGAGGAATACCCTGACAGAATCATGAACACATTCAGTGTTGT
CCCATCCCCAAAAGTCTCTGATACCGTTGTTGAACCATACAATGCTACCT
TATCTGTCCATCAACTTGTCGAAAATACTGATGAAACCTTTTGTATCGAC
AACGAGGCCTTATACGATATCTGCTTCAGAACCTTGAAATTAACAACACC
TACCTATGGAGATCTCAACCATCTCGTTTCTGCCACCATGAGCGGTGTCA
CCACATGTCTCCGATTCCCTGGTCAAGTAAGTATATTTCAAGTGTCTTTA
CATTGGTGAAGTTATAAGGCTGAGTGAAATAGCTTTCTTACATACCACCA
TAGGAGTGATTTGTTgtgttaattttcatttttagtcaGGTCAAAAACTA
AAGCTAACTATAACTTTGAGAACTTTGATTGGTAAATACCAGTATTAAAT
AATATCTCTTACTTGTCTATTCTAGTTGAATGCTGACCTCCGTAAATTAG
CTGTCAACATGGTCCCATTCCCCCGTCTCCATTTCTTCATGCCTGGATTT
GCACCATTGACCAGCCGTGGCTCGCAACAATACCGTGCCTTGACTGTCCC
AGAATTGACCCAACAAATGTTCGATGCCAAGAACATGATGGCTGCCTGTG
ATCCACGTCATGGACGATACTTGACCGTTGCTGCCATGTTCCGTGGTAGA
ATGTCAATGAAGGAAGTTGATGAACAAATGTTGAATGTTCAAAACAAGAA
CAGCTCATACTTCGTTGAATGGATTCCAAACAACGTCAAGACCGCTGTCT
GTGATATCCCACCACGTGGATTGAAGATGTCTGCTACCTTCATTGGTAAC
AGCACTGCCATCCAAGAATTGTTCAAACGTATCAGCGAACAATTCACTGC
TATGTTCCGAAGAAAGGCTTTCTTGCATTGGTATACTGGTGAAGGTATGG
ACGAAATGGAATTCACCGAAGCTGAATCCAACATGAATGATCTCGTCTCT
GAATACCAACAATACCAAGATGCCACTGCTGATGATGAAGGAGAATTcga
agaagaggaagaagaagatGCTGAATAAATTATgttctttttaacttttt
gggatGTCTTTAATTGTATTTGTGCTAATTTGAAGACTGACTTTAATTTC
TGTAAATAATACTTTTCTATTCCTGgtatttcatttcttttgaaaacatt
ttcttcttataaatcaccttttcattaatttttgtgtttaaaaaataatc
ttttttgtGAATCTGAATCTTTAGGGGAAATTTCGACCAACATTTCAGAA
AACCGTTTTTCAGCTTACTTTTTGGAGacactcaatttttttaaggGCTA
GTTATTAGTCACcacaacttgatttttttaacttttcgacttttttgata
tatttaaaCTCATTTTTTCTGCCCCTCCAGCTAACAAACCTACATGAATC
CCTGTCAGAATTCGACGTCCTTTCCCGATGGTTGGTCTGAACGTTATAAG
AAAGTTTAGCCCAAAAAAAATAATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007475-exon-sc0000077-1491911889:666494..666727 | TCONS_00007475-exon-sc0000077-1491911889:666494..666727 | Clytia hemisphaerica | exon |
| TCONS_00007475-exon-sc0000077-1510915933:666494..666727 | TCONS_00007475-exon-sc0000077-1510915933:666494..666727 | Clytia hemisphaerica | exon |
| TCONS_00007475-exon-sc0000077-1575043694:666494..666727 | TCONS_00007475-exon-sc0000077-1575043694:666494..666727 | Clytia hemisphaerica | exon |
| TCONS_00007475-exon-sc0000077-1491911889:666846..666954 | TCONS_00007475-exon-sc0000077-1491911889:666846..666954 | Clytia hemisphaerica | exon |
| TCONS_00007475-exon-sc0000077-1510915933:666846..666954 | TCONS_00007475-exon-sc0000077-1510915933:666846..666954 | Clytia hemisphaerica | exon |
| TCONS_00007475-exon-sc0000077-1575043694:666846..666954 | TCONS_00007475-exon-sc0000077-1575043694:666846..666954 | Clytia hemisphaerica | exon |
| TCONS_00007475-exon-sc0000077-1491911889:667200..667768 | TCONS_00007475-exon-sc0000077-1491911889:667200..667768 | Clytia hemisphaerica | exon |
| TCONS_00007475-exon-sc0000077-1510915933:667200..667768 | TCONS_00007475-exon-sc0000077-1510915933:667200..667768 | Clytia hemisphaerica | exon |
| TCONS_00007475-exon-sc0000077-1575043694:667200..667768 | TCONS_00007475-exon-sc0000077-1575043694:667200..667768 | Clytia hemisphaerica | exon |
| TCONS_00007475-exon-sc0000077-1491911889:668919..669968 | TCONS_00007475-exon-sc0000077-1491911889:668919..669968 | Clytia hemisphaerica | exon |
| TCONS_00007475-exon-sc0000077-1510915933:668919..669968 | TCONS_00007475-exon-sc0000077-1510915933:668919..669968 | Clytia hemisphaerica | exon |
| TCONS_00007475-exon-sc0000077-1575043694:668919..669968 | TCONS_00007475-exon-sc0000077-1575043694:668919..669968 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000077 | supercontig | sc0000077:666494..669968 + |
Blast
BLAST of TCONS_00007475 vs. Swiss-Prot (Human)
Match: TBB4B (Tubulin beta-4B chain OS=Homo sapiens GN=TUBB4B PE=1 SV=1) HSP 1 Score: 851.662 bits (2199), Expect = 0.000e+0 Identity = 424/426 (99.53%), Postives = 426/426 (100.00%), Query Frame = 1
Query: 178 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAMFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 1455
MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAA+FRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ
Sbjct: 1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 426
The following BLAST results are available for this feature:
|
