TCONS_00007467 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007467
Unique NameTCONS_00007467
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length725

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007467 ID=TCONS_00007467|Name=TCONS_00007467|organism=Clytia hemisphaerica|type=transcript|length=725bp
TGAATGATTTGTCCAGGCTGATTATTACAGATTATGAAGACAAAGTGAAT
TTCTACGTCATGGGGTGCGTGACGTTCTTCAAAAGTAATTGGGAAGATAT
CCGCTCCAATGCCGCTCTCTTCGTTGGTTTCTTACTCGGAAATTTGAAGA
GTAGTCAACGTGAAATTGTATCTACAGCGCATGTGTGTAATGCATTAGTG
GTGTTGTTAAAAGATCCGTCTGGTAAAGTTCGTTCGAAAGCAGCTGAAGC
CATGAGCCTCTTGTATGATTATTGAAGTGATGAGGTCCCGTGACTGAAAA
CAGCCAATCAGGAaGTCTTCCCTTTGTTGGAGTTTATTCTTGTCATTTTT
GGATGTCATTGTAATTATGTTGTTATGTTGTCATGGTGATTTTTCTGGGG
ATTCAATATGGCGGCAGTTTGGTATGTAGTAGATGCACAATTACCAATTA
GAAggctttttacaatttttttatacaGAATTTAGTTTTAGAacacaaaa
aattacatttcataattaaattaataaattacataaaaaacaacaaaaaa
gtaaaaagataataaattatttgaaaatttttgaaaattcttttttgttt
tagaatTTCGTAATATTATTTCACTTTCAATATTTCGCATTGTTTTTAAC
CAATAACTAATACAAGCTAAAATAAGTCATGTTCTTCTAGCTAAGTCgaa
aaccaaaattttcaaaaggttttTC
Run BLAST on NCBI

transcript from alignment at sc0000077:411546..415262+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007467 ID=TCONS_00007467|Name=TCONS_00007467|organism=Clytia hemisphaerica|type=transcript|length=3717bp|location=Sequence derived from alignment at sc0000077:411546..415262+ (Clytia hemisphaerica)
TGAATGATTTGTCCAGGCTGATTGTAAGTCAAAGTCAATCTAAATATTAC
TAATTCTGAATGATTTTTCCAGGCTCATTGTAAGTCAAAGTCAATCTAAA
TGAAggccgaaggctcctctttcgatagctatccatCCGAAGGTAGggaa
gggcgccactctttttcCCATGGTTGCTCCACTTTTCCTTGATACtcctc
ttaattgctgagcatcaagcagagaggcatcagatatcatttttggaatc
tttggtatgacccggctgaggattgaacccacaaccttgcacaccgtagc
tggatgctcttcCACTGCACTACAGTCGCTTCAAATATTACTACCTTTGA
TGGTCTGAGTTCCTTCTGCGAAAATTCTTCATGTCTGTAGTTTCTCAGAA
AATTATTCAACAATCTAAATAAAGTCATGCTTCCATATCAAGACATATGG
CCTCTTTAATTTCCTCTTATATTATTGCGGTTTCTTTGAAATTCTCCTTG
CGTACGAAGGATATGAATGAAGCATACTCCGTTCATCAAAACGTTAACTC
TTTCGCCAGCTAAATTTTCCTCATTTATGAACGATTCTTTCGGCTGCCGG
TCATTTTGATTGAGGAGTGGTATGAAGATAGAACttgaaaatagctttcc
aaCGAACTCAAACATGACCTATTTTGCTTTAGCCAAAGCTGAGAAAATGC
ATTTAAAGTTGACGTAAAAAGGCTTAGATGCGTACCTTAATGCCCTAAAT
TTTCGTGCGCCTTTTATTTTCGAgccctttaattttcgcgcctttaattt
tcgcgcacccCTTAAAAACGACCTTTCGCGCgccctttaattttcgcgcc
tttaattttcgcgcacccCTTAAAAACGACCTTTCGCGcaccctttaatt
ttcgcgcacccCTATTATAATTTGTTTCTCTTTACGTATTTTACATATTC
TATTCTGGTCGTGttctagtcaaatcctcataaaaaagtctccaaaaggc
ggacactttAATCAGCGGACACGAATCTGTTTCCCCAAttgtgtccgcta
attagaggctcCACTGTACTATGAATATCAtagttttatcaaaaatcatg
attaattggttttattaatttatttgctAATTCGCGCACCTTTTAATTTT
CGCGCGGCCTAGTGCGTGAAAATAGGCCTTTTTCGCGCACCCTTTAATTT
CCGCGCAGTGGTAGTGCGCGAAAATTAAGGGTGCGCGAAAATTAAGGCGG
CATTAAGGTATACATGAtacaaatatattttctcctTTCAGATTACAGAT
TATGAAGACAAAGTGAATTTCTACGTCATGGGGTGCGTGACGTTCTTCAA
AAGTAATTGGGAAGATATCCGCTCCAATGCCGCTCTCTTCGTTGGTTTCT
TACTCGGAAATTTGAAGAGTAGTCAACGTGAAATTGTATCTACAGCGCAT
GTGTGTAATGGTGAGTCGTCCGAAATTCTAATATACACttggcgctctct
aattcgacgttcgactattcgataggctccattattcgatgaaatttaaa
gtccccgtcaacaagaaactctcataaacgacgctcccttattcgataag
ctcccttattcgattaaAATCCTTtatcccttgaagatcgaattagagag
cgtcaactgtaatatATTGTGGGTTCTGAGATTTTTGAAGGCCGATAAAG
GTGAAAATTCCCGAATGTTTAGTCTATTTCCTGTTGACGCTGAAAGGCAC
ACAGACTCTTGTACGCCCATCTCTCATCATCTGTCCTTGACTTGCAACCC
CTTTAGAGGGTCTAATTGTTATTTTGTCTCTCTATCGTTTTAACTTTTCA
TAGCTCgaacttcaaaactttcaaatgtttttttgatttcaaatgcgCGG
TCACATCCCatcaacttaaaattttgataaggTGGAATCGATAAAACAGG
GTGGCATGAGCCGCGGTGCTCCTACCGTGAGAGTGGGttacttgcatcag
tggaggctaacatgcatatcccccaaatgaatgacctgtctggtcgttaa
aatacaaagttaaatcaagacaaaaatggtagagtagagctgtgagcgga
gctgaatatagtttattttaatgaccagccaggtcattcatttgagggct
atgcatgttagcctccactgatgcaaattacccactctcacggtagGTAA
ACAACTACCGGTACAGGAGAGAAAAGATTGAGCGATCTCAATTTGTGGGT
TGTACAATCTTTTAACCAGTCAGTGTATATCTACTCACTACTTACAATCC
AAGAGTTGTGGTTTCGATCCCCGACCACCACCAACTCTGCGAATGAGTAG
CTTtaattgggtaatctgatctaagcGGTAAGtcactgggagctgagagt
gaGTGACCTGtcagcgcaaatagaaaagggagTAGACTTCCTCACTCCGC
CATCAAATGAATATACTTTTCTTATTTACTCACTGTTTAGCATTAGTGGT
GTTGTTAAAAGATCCGTCTGGTAAAGTTCGTTCGAAAGCAGCTGAAGCCA
TGAGCCTCTTGTATGATTATTGAAGTGATGAGGTCCCGTGACTGAAAACA
GCCAATCAGGAGTTGGTAAACACTTTCGTTTTACAGTCGAACTCTCGTTT
ATTCGAACCTttctataattgaaacttattaTAAATCATTTTCCGTCAGG
GAGAAACCTAgtcaaaatactttctataattcgaatctctttgTTAATCG
AACACATGAGATTCCccattcgagttcgaattagcgagagtcaattgtat
tgatatttttcaaataagaCTTTTTTCGAGTTATCCTGGAGAATTCTTTC
AGTAATTTTTAGAAGGTTGCTGGGATGAATATGCCCTGTGTGCAGGAGAA
TCTTTTAAGCCATAATTCCTTTTCATCTCCCATCATTGTCTGAATTCCTG
GGTgcctaaacgtttttttttataagaacaactttgtaagaacataagtc
ttcgatggccaaaatattaagaataagttaagaacattttaataggCTTC
AAtcaccaaaatattaaaaacaattcaagaacattttaaggatcTGCGGA
CTCAAAAGcaccctatttcttagaaaaatgctcacaaaatggtcaaatta
agaaaattttaagaatattttcaggctttaagttcaaaaagttaagaaca
tccgaaggcttagatattttggatgttcttatagaaaacgtGCAGTTGTA
TTCCTGGATGCAACAGCCAAACCAtactttaattttcttttttctttata
aacagaGTCTTCCCTTTGTTGGAGTTTATTCTTGTCATTTTTGGATGTCA
TTGTAATTATGTTGTTATGTTGTCATGGTGATTTTTCTGGGGATTCAATA
TGGCGGCAGTTTGGTATGTAGTAGATGCACAATTACCAATTAGAAggctt
tttacaatttttttatacaGAATTTAGTTTTAGAacacaaaaaattacat
ttcataattaaattaataaattacataaaaaacaacaaaaaagtaaaaag
ataataaattatttgaaaatttttgaaaattcttttttgttttagaatTT
CGTAATATTATTTCACTTTCAATATTTCGCATTGTTTTTAACCAATAACT
AATACAAGCTAAAATAAGTCATGTTCTTCTAGCTAAGTCgaaaaccaaaa
ttttcaaaaggttttTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004210XLOC_004210Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007467-exon-sc0000077-1491911889:411546..411568TCONS_00007467-exon-sc0000077-1491911889:411546..411568Clytia hemisphaericaexon
TCONS_00007467-exon-sc0000077-1510915933:411546..411568TCONS_00007467-exon-sc0000077-1510915933:411546..411568Clytia hemisphaericaexon
TCONS_00007467-exon-sc0000077-1575043694:411546..411568TCONS_00007467-exon-sc0000077-1575043694:411546..411568Clytia hemisphaericaexon
TCONS_00007467-exon-sc0000077-1491911889:412837..413005TCONS_00007467-exon-sc0000077-1491911889:412837..413005Clytia hemisphaericaexon
TCONS_00007467-exon-sc0000077-1510915933:412837..413005TCONS_00007467-exon-sc0000077-1510915933:412837..413005Clytia hemisphaericaexon
TCONS_00007467-exon-sc0000077-1575043694:412837..413005TCONS_00007467-exon-sc0000077-1575043694:412837..413005Clytia hemisphaericaexon
TCONS_00007467-exon-sc0000077-1491911889:414036..414156TCONS_00007467-exon-sc0000077-1491911889:414036..414156Clytia hemisphaericaexon
TCONS_00007467-exon-sc0000077-1510915933:414036..414156TCONS_00007467-exon-sc0000077-1510915933:414036..414156Clytia hemisphaericaexon
TCONS_00007467-exon-sc0000077-1575043694:414036..414156TCONS_00007467-exon-sc0000077-1575043694:414036..414156Clytia hemisphaericaexon
TCONS_00007467-exon-sc0000077-1491911889:414851..415262TCONS_00007467-exon-sc0000077-1491911889:414851..415262Clytia hemisphaericaexon
TCONS_00007467-exon-sc0000077-1510915933:414851..415262TCONS_00007467-exon-sc0000077-1510915933:414851..415262Clytia hemisphaericaexon
TCONS_00007467-exon-sc0000077-1575043694:414851..415262TCONS_00007467-exon-sc0000077-1575043694:414851..415262Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000077supercontigsc0000077:411546..415262 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.90373	0	0	0	0	1.78707	0	0.0572415
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007467 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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