TCONS_00007466 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007466
Unique NameTCONS_00007466
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length305

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007466 ID=TCONS_00007466|Name=TCONS_00007466|organism=Clytia hemisphaerica|type=transcript|length=305bp
ATTCCAGTCGTGTTGTCCGATCATTCGGTAAGTGAAAACCATCCAACCAC
CTCCTCGATTCTCCATATCACATCTGACATCTTTCATTCCTACCCCTCCT
GGTAGATTGAGAGAGTAGATACCAGAAGCTTTGTATCCGAGATGGTACAG
ATCTCTACAGTCTTGAATATCTGTGTNTAATTTGGTTCCTTGAAGTGTAG
TTTAATTTGTAAACCGATCAAATTGGTAGTAGTTGTGTTATAAAAATGAC
AAGTGATTGGGTTGTCTTTGGATGTTGTCTGGATGAGAAAAGATGCACAT
TTTTC
Run BLAST on NCBI

transcript from alignment at sc0000077:355137..355510+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007466 ID=TCONS_00007466|Name=TCONS_00007466|organism=Clytia hemisphaerica|type=transcript|length=374bp|location=Sequence derived from alignment at sc0000077:355137..355510+ (Clytia hemisphaerica)
ATTCCAGTCGTGTTGTCCGATCATTCGGTAAGTGAAAACCATCCAACCAC
CTCCTCGATTCTCCATATCACATCTGACATCTTTCATTCCTACCCCTCCT
GGTAGATTGAGAGAGTAGATACCAGAAGCTTTGTATCCGAGATGGTACAG
ATCTCTACAGTCTTGAATATCTGTGTATAATTTGGTTCCTTGAAGCGCAG
TTTGTAAACCGATCAAATTGGTAGTAGTTGTGTTATAAAAATGACNTAAT
TTGGTTCCTTGAAGTGTAGTTTAATTTGTAAACCGATCAAATTGGTAGTA
GTTGTGTTATAAAAATGACAAGTGATTGGGTTGTCTTTGGATGTTGTCTG
GATGAGAAAAGATGCACATTTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004211XLOC_004211Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007466-exon-sc0000077-1491911889:355137..355312TCONS_00007466-exon-sc0000077-1491911889:355137..355312Clytia hemisphaericaexon
TCONS_00007466-exon-sc0000077-1510915933:355137..355312TCONS_00007466-exon-sc0000077-1510915933:355137..355312Clytia hemisphaericaexon
TCONS_00007466-exon-sc0000077-1575043694:355137..355312TCONS_00007466-exon-sc0000077-1575043694:355137..355312Clytia hemisphaericaexon
TCONS_00007466-exon-sc0000077-1491911889:355382..355510TCONS_00007466-exon-sc0000077-1491911889:355382..355510Clytia hemisphaericaexon
TCONS_00007466-exon-sc0000077-1510915933:355382..355510TCONS_00007466-exon-sc0000077-1510915933:355382..355510Clytia hemisphaericaexon
TCONS_00007466-exon-sc0000077-1575043694:355382..355510TCONS_00007466-exon-sc0000077-1575043694:355382..355510Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000077supercontigsc0000077:355137..355510 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.329451	0	0	0	0	0	0	1.43081	0.541267	2.26293	0.193624	6.44059	2.58442	1.15953	0.536632	0	0.284131	6.84824	8.55573	1.24773	0	0	1.10633	0	0.707677	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007466 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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