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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007458 ID=TCONS_00007458|Name=TCONS_00007458|organism=Clytia hemisphaerica|type=transcript|length=839bp
CAAATTTTACCAAACCAGAAGATTGATTGAGATATAGTGGCTACCTCTCT
TGAAAAAAGacTGGACGAAAATGGAGCGGATTAGCGCCATCATtgctttg
ttgtttttcatcGCCAACGTAGAAGAAAACTCAGCGAAAGAGTCCAACGT
TGAACGTTTCCACGTTGCTGACGGAATCAACGCAATCGCGGCCAACCTTG
GAAACGCATTTGCAGCAACGCTCCTCAGCGCTTATGACTTTGGTGCAGTC
GGTGCGATCGAGAATTAttccaaatttaatttacacGTTCAGGAATGCAA
GAACGGTAAAGGCGAAGTCATGGAACCCTTTCAAGAGAAACTTGCACCGG
GCGGTAATGGGCGGTTATCGATGTACAATAAAGCTGGTGGCGTGAAACAT
GATTGTACGTACGTGCTTGTAAAACAAAAATGCGCAACGCCCCCTGACTG
CAAGAACGACGATCACTACCTTGACGTCAGCGTGAAGTTTCACGTCAAAA
GCGAAACCCAGTCGGAGATCGGAGGCCGTATTTGTAAATGGGCGCAGAGA
GATTGTAAAAGGAGCCGTAAGACCCATTACAAACCAATGAAATTCTGTAA
CGCTGATCTTGGCTTTTGTATGGAAGGACAAATAGCAAGTGGGAAACACA
CAAATGCATTCTGGGCCATTTACCCATGCTCCAAAGCGAATTTCTGTCCA
AACAGCGAATGCAAGCCGACGGCGAACGACAAAACGAATTTCGTAGAACT
GATCAAGACTTTTAAGGATGGACAAACATGTCTTGATAACCACGATAACT
AGTCTCTTAATATTGTGAATTTCTACTTAGCATTCTTTT Run BLAST on NCBI protein sequence of TCONS_00007458-protein >TCONS_00007458-protein ID=TCONS_00007458-protein|Name=TCONS_00007458-protein|organism=Clytia hemisphaerica|type=polypeptide|length=243bp
MERISAIIALLFFIANVEENSAKESNVERFHVADGINAIAANLGNAFAAT
LLSAYDFGAVGAIENYSKFNLHVQECKNGKGEVMEPFQEKLAPGGNGRLS
MYNKAGGVKHDCTYVLVKQKCATPPDCKNDDHYLDVSVKFHVKSETQSEI
GGRICKWAQRDCKRSRKTHYKPMKFCNADLGFCMEGQIASGKHTNAFWAI
YPCSKANFCPNSECKPTANDKTNFVELIKTFKDGQTCLDNHDN Run BLAST on NCBI transcript from alignment at sc0000077:230824..232312+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007458 ID=TCONS_00007458|Name=TCONS_00007458|organism=Clytia hemisphaerica|type=transcript|length=1489bp|location=Sequence derived from alignment at sc0000077:230824..232312+ (Clytia hemisphaerica)
CAAATTTTACCAAACCAGAAGATTGATTGAGATATAGTGGCTACCTCTCT
TGAAAAAAGGTAAGATTATTTTCAATCATATCTCCTACTTGATGAAGAGC
ATTTGCATTCTTCACTGGAATCTCGTGTTCTATAGTATTGTCCAGAATTA
GATCACAGTAAAACCTTATACTTTAGTAATAGTTTTGACCTAGGCCCCCG
GGTCCGGGTAAgagtatgtgccgcccttaagggtatctTTTTACTAagag
ttggaaaaatcagaaaatcaaatttcaaacccactgaaggtcgggaaaaa
aATGGGATAACTCCAAGTTGCTCCTAAAGATCGAAGCcatcccaataagg
gtcgtaaaattcacaaaattttactttctttCTTCCTTTTTAGTTCTTTT
TAGTCTGAGGATCGAAAGTCGGGATATacctgtcagctcgcaaccctagt
acccccgggcctAGGCTTTATTTACAATGTTGATGGATGCCAGATAATAC
CCTGGTGTGGTATTGTGCAAATTCCCTTTATCAGAAGAGGGATTTCACAA
AACAGTCAATGCCAGGGTATTGTATATTAAATGGCGATATCAGTATGAat
taaaaagctgataatacgcagggaacgcgACTTCATGGGCCGATACATCA
AATCTGGATAATATTACGAGGCATATTTGTTGTGTATAGTatgttccatt
ttattttagacTGGACGAAAATGGAGCGGATTAGCGCCATCATtgctttg
ttgtttttcatcGCCAACGTAGAAGAAAACTCAGCGAAAGAGTCCAACGT
TGAACGTTTCCACGTTGCTGACGGAATCAACGCAATCGCGGCCAACCTTG
GAAACGCATTTGCAGCAACGCTCCTCAGCGCTTATGACTTTGGTGCAGTC
GGTGCGATCGAGAATTAttccaaatttaatttacacGTTCAGGAATGCAA
GAACGGTAAAGGCGAAGTCATGGAACCCTTTCAAGAGAAACTTGCACCGG
GCGGTAATGGGCGGTTATCGATGTACAATAAAGCTGGTGGCGTGAAACAT
GATTGTACGTACGTGCTTGTAAAACAAAAATGCGCAACGCCCCCTGACTG
CAAGAACGACGATCACTACCTTGACGTCAGCGTGAAGTTTCACGTCAAAA
GCGAAACCCAGTCGGAGATCGGAGGCCGTATTTGTAAATGGGCGCAGAGA
GATTGTAAAAGGAGCCGTAAGACCCATTACAAACCAATGAAATTCTGTAA
CGCTGATCTTGGCTTTTGTATGGAAGGACAAATAGCAAGTGGGAAACACA
CAAATGCATTCTGGGCCATTTACCCATGCTCCAAAGCGAATTTCTGTCCA
AACAGCGAATGCAAGCCGACGGCGAACGACAAAACGAATTTCGTAGAACT
GATCAAGACTTTTAAGGATGGACAAACATGTCTTGATAACCACGATAACT
AGTCTCTTAATATTGTGAATTTCTACTTAGCATTCTTTT Coding sequence (CDS) from alignment at sc0000077:230824..232312+ >TCONS_00007458 ID=TCONS_00007458|Name=TCONS_00007458|organism=Clytia hemisphaerica|type=CDS|length=732bp|location=Sequence derived from alignment at sc0000077:230824..232312+ (Clytia hemisphaerica)
ATGGAGCGGATTAGCGCCATCATtgctttgttgtttttcatcGCCAACGT
AGAAGAAAACTCAGCGAAAGAGTCCAACGTTGAACGTTTCCACGTTGCTG
ACGGAATCAACGCAATCGCGGCCAACCTTGGAAACGCATTTGCAGCAACG
CTCCTCAGCGCTTATGACTTTGGTGCAGTCGGTGCGATCGAGAATTAttc
caaatttaatttacacGTTCAGGAATGCAAGAACGGTAAAGGCGAAGTCA
TGGAACCCTTTCAAGAGAAACTTGCACCGGGCGGTAATGGGCGGTTATCG
ATGTACAATAAAGCTGGTGGCGTGAAACATGATTGTACGTACGTGCTTGT
AAAACAAAAATGCGCAACGCCCCCTGACTGCAAGAACGACGATCACTACC
TTGACGTCAGCGTGAAGTTTCACGTCAAAAGCGAAACCCAGTCGGAGATC
GGAGGCCGTATTTGTAAATGGGCGCAGAGAGATTGTAAAAGGAGCCGTAA
GACCCATTACAAACCAATGAAATTCTGTAACGCTGATCTTGGCTTTTGTA
TGGAAGGACAAATAGCAAGTGGGAAACACACAAATGCATTCTGGGCCATT
TACCCATGCTCCAAAGCGAATTTCTGTCCAAACAGCGAATGCAAGCCGAC
GGCGAACGACAAAACGAATTTCGTAGAACTGATCAAGACTTTTAAGGATG
GACAAACATGTCTTGATAACCACGATAACTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007458-exon-sc0000077-1491911889:230824..230882 | TCONS_00007458-exon-sc0000077-1491911889:230824..230882 | Clytia hemisphaerica | exon |
| TCONS_00007458-exon-sc0000077-1510915933:230824..230882 | TCONS_00007458-exon-sc0000077-1510915933:230824..230882 | Clytia hemisphaerica | exon |
| TCONS_00007458-exon-sc0000077-1575043694:230824..230882 | TCONS_00007458-exon-sc0000077-1575043694:230824..230882 | Clytia hemisphaerica | exon |
| TCONS_00007458-exon-sc0000077-1491911889:231533..232312 | TCONS_00007458-exon-sc0000077-1491911889:231533..232312 | Clytia hemisphaerica | exon |
| TCONS_00007458-exon-sc0000077-1510915933:231533..232312 | TCONS_00007458-exon-sc0000077-1510915933:231533..232312 | Clytia hemisphaerica | exon |
| TCONS_00007458-exon-sc0000077-1575043694:231533..232312 | TCONS_00007458-exon-sc0000077-1575043694:231533..232312 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000077 | supercontig | sc0000077:230824..232312 + |
Blast
The following BLAST results are available for this feature:
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