TCONS_00007455 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007455
Unique NameTCONS_00007455
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2328

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007455 ID=TCONS_00007455|Name=TCONS_00007455|organism=Clytia hemisphaerica|type=transcript|length=2328bp
tAAAAACCTCAGACTCAAGCTGCatcatttttattcttttcGGGATATTT
TTATACTTTAAAAGTGTGAACTGTGAACTGTCCAGGTTAtgtgtttttta
atgaaattttaattGAAACGAAAAGGAGGTTGAAATGGAACGCTAGATGA
AGAAGTCGCGTGCTAACTGAAATATCGAACCAAACAAATTGTCTTTTGGT
CTTTGGAATCAAAAAAATGGAGAATCAGGCAATTGATGAACTATACTGAT
CGAAGGATTTACGGAGGACAAAAAATCCAAATTCgtgaatttagaaaaat
aagaatttacgAAGTGACGGAAAAATTATACGATTGACCAACAAAGGTGT
TTCGATTCATTCCCGGTCTCTCACTTGCTTTCCAAGTGCGCTAcaattaa
acgattttttacGAACACAATAGAGTTTTACGAACTTGACGAGTAATAGA
GTTTTACGAACTTGACGAGTAATAGAGTTTTACGAACTTGACGAGTAACA
GAGTTTTACGGACTTGACGAATAATAGAGTTTTACGGACTGAGGAGCAAA
ACAGAGTTTTACGAACTTGACAAATAATAGAGTTTTACGAACTGAGGAGC
AAAAGGTTTTACGAACTCGATGAATAATAGAGTTTTACGAACTTGGGAAC
AATAGAGTTTTACGAACTGCAGAGCAAAACAGAGGTTTACGAAGTGAGGA
ATAAAATAGAGTTTTACGAACTTGAGAATATAATAGAGTTTTACGGGCTG
AGGAACAAAACAGAATTTTACGAACTGAGGAATAATAAAGGAACAATTAA
TTTTCACAAACTTCGTCAGTTTGATAAAGTTTGTGAAGACCAAAATGAAG
GAAGAGACGAAAGACAACACACAAGAAGAAGAGATCGAACCAGCTTCAAA
GggtgttgtttttctcttctgtttCATGTTACTCACTAAAGGAATCACAG
CGtgtattttccagaccaccacTTATTTTTTCATGCTACGAATCATGGAT
GGGAAAATTGAACAGGCAAATTATCTATACACGACACTATCAACCGTCAA
AGCGATTACCAAATTCATTGGTGTTTTTATATGTGGTCTGGCTATCGATA
GTCAAAAAATGAAGTTACGAACAATAATGCAAATCTTCACAACCTTTCAC
ACACTAGGCTTCATTTTCTCGTTTTTTCCAAATATCCATTTGTTGTTTAT
TGGAAATATATTTCGCGAATTCGGTGCCGGTTACATTATCGTAGTGAAAG
TGAAACTAACATTTAGCAAAAAGCAATCTTCTTTCGCGTTGGTTTGTACG
GTTTTCGCCAAAATCATGGGCATTATCGCCGGCtcattattatcaatttt
cgTTATCCCGAAAGTTGAATTCAAGattggaaattttgatgtcTGGTATG
GGAATTTTCCTTGCTTGGTTTCGTTTACTCTTTATTTCGTCATCTTGATC
TTATGTTCTAACCTCATGACTGATAACGATGACCCGATACAAATCCTAAA
ACGCATTAATAAACGGAAGAAAGAAAAATCCTTTTGGCGGAACGGTTTTG
AACTTTGTAAAAATATCGCGTACCTTGTTATACTAATGTTTAGTATATAT
TTCTACATGGTGGTAGAGGCGTATAAGAATTACCGATCCATTAATTACCT
ACATTGCTATGGTTTCGGTGTACAATGGCTTGGTGCCATGCTTCTCGTCG
CTTATACCgccaaattatttttcatgccCGCTTTTAAGATCATTAATGAT
CATtggcaaaaaattgacttcatggTCGTTATAATCCTACCTTACTTAGC
TTTTGGTTTATCACAAACAACAGTTGGTAGTCTTTTCTGCGACTCGTACC
TTCTCAGTGATATGTATGTCAAAATGATGTTTACAGCCGGCTACCAAATC
CCGCCCGTTCTTCTCATAGCCAAATTAGTGGATAATAAAATGAAAGGAAC
CGCCCAATCTCTATGCAGCATGTGTCAGAAACTTAGTGCCATCATTATTG
GTGCTTTAGGAACAATTTTTGTCAATCATCAAGAACCTTTTATGTTTTGC
TTAATGTTGATTGGTGTATTTTTGGTTGCCATGGCGATCTGGAAACGTCA
ACTTTTTGTCAATCTTTGATTTACTTTTACTGTAGTTTTACATttgattt
aatttcatttcatttatgTACCTTAACGGACATTTTACGCCGGCCCCAAT
TTTACGCTGAATAATGGCCGGTGTAAAAGAGTCAGTGTAAAAGGGTCGGT
GTAAAAAGGAccgataagatttttttttaagcaTTCTTAGTTAGATTTGG
GAAAAAGTTAATTTATCGAAAACACTCG
Run BLAST on NCBI

protein sequence of TCONS_00007455-protein

>TCONS_00007455-protein ID=TCONS_00007455-protein|Name=TCONS_00007455-protein|organism=Clytia hemisphaerica|type=polypeptide|length=424bp
MKEETKDNTQEEEIEPASKGVVFLFCFMLLTKGITACIFQTTTYFFMLRI
MDGKIEQANYLYTTLSTVKAITKFIGVFICGLAIDSQKMKLRTIMQIFTT
FHTLGFIFSFFPNIHLLFIGNIFREFGAGYIIVVKVKLTFSKKQSSFALV
CTVFAKIMGIIAGSLLSIFVIPKVEFKIGNFDVWYGNFPCLVSFTLYFVI
LILCSNLMTDNDDPIQILKRINKRKKEKSFWRNGFELCKNIAYLVILMFS
IYFYMVVEAYKNYRSINYLHCYGFGVQWLGAMLLVAYTAKLFFMPAFKII
NDHWQKIDFMVVIILPYLAFGLSQTTVGSLFCDSYLLSDMYVKMMFTAGY
QIPPVLLIAKLVDNKMKGTAQSLCSMCQKLSAIIIGALGTIFVNHQEPFM
FCLMLIGVFLVAMAIWKRQLFVNL
Run BLAST on NCBI

transcript from alignment at sc0000077:148704..151110+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007455 ID=TCONS_00007455|Name=TCONS_00007455|organism=Clytia hemisphaerica|type=transcript|length=2407bp|location=Sequence derived from alignment at sc0000077:148704..151110+ (Clytia hemisphaerica)
tAAAAACCTCAGACTCAAGCTGCatcatttttattcttttcGGGATATTT TTATACTTTAAAAGTGTGAACTGTGAACTGTCCAGGTTAtgtgtttttta atgaaattttaattGAAACGAAAAGGAGGTTGAAATGGAACGCTAGATGA AGAAGTCGCGTGCTAACTGAAATATCGAACCAAACAAATTGTCTTTTGGT CTTTGGAATCAAAAAAATGGAGAATCAGGCAATTGATGAACTATACTGAT CGAAGGATTTACGGAGGACAAAAAATCCAAATTCgtgaatttagaaaaat aagaatttacgAAGTGACGGAAAAATTATACGATTGACCAACAAAGGTGT TTCGATTCATTCCCGGTCTCTCACTTGCTTTCCAAGTGCGCTAcaattaa acgattttttacGAACACAATAGAGTTTTACGAACTTGACGAGTAATAGA GTTTTACGAACTTGACGAGTAATAGAGTTTTACGAACTTGACGAGTAACA GAGTTTTACGGACTTGACGAATAATAGAGTTTTACGGACTGAGGAGCAAA ACAGAGGTTTACGAACTTGACGAATAATAGAGTTTTACGAACTGAGGAAC AAAACAGAGGTTTACGAACTTGACGAATAATAGAGTTTTACGAACTTGAC AAATAATAGAGTTTTACGAACTGAGGAGCAAAAGGTTTTACGAACTCGAT GAATAATAGAGTTTTACGAACTTGGGAACAATAGAGTTTTACGAACTGCA GAGCAAAACAGAGGTTTACGAAGTGAGGAATAAAATAGAGTTTTACGAAC TTGAGAATATAATAGAGTTTTACGGGCTGAGGAACAAAACAGAATTTTAC GAACTGAGGAATAATAAAGGAACAATTAATTTTCACAAACTTCGTCAGTT TGATAAAGTTTGTGAAGACCAAAATGAAGGAAGAGACGAAAGACAACACA CAAGAAGAAGAGATCGAACCAGCTTCAAAGggtgttgtttttctcttctg tttCATGTTACTCACTAAAGGAATCACAGCGtgtattttccagaccacca cTTATTTTTTCATGCTACGAATCATGGATGGGAAAATTGAACAGGCAAAT TATCTATACACGACACTATCAACCGTCAAAGCGATTACCAAATTCATTGG TGTTTTTATATGTGGTCTGGCTATCGATAGTCAAAAAATGAAGTTACGAA CAATAATGCAAATCTTCACAACCTTTCACACACTAGGCTTCATTTTCTCG TTTTTTCCAAATATCCATTTGTTGTTTATTGGAAATATATTTCGCGAATT CGGTGCCGGTTACATTATCGTAGTGAAAGTGAAACTAACATTTAGCAAAA AGCAATCTTCTTTCGCGTTGGTTTGTACGGTTTTCGCCAAAATCATGGGC ATTATCGCCGGCtcattattatcaattttcgTTATCCCGAAAGTTGAATT CAAGattggaaattttgatgtcTGGTATGGGAATTTTCCTTGCTTGGTTT CGTTTACTCTTTATTTCGTCATCTTGATCTTATGTTCTAACCTCATGACT GATAACGATGACCCGATACAAATCCTAAAACGCATTAATAAACGGAAGAA AGAAAAATCCTTTTGGCGGAACGGTTTTGAACTTTGTAAAAATATCGCGT ACCTTGTTATACTAATGTTTAGTATATATTTCTACATGGTGGTAGAGGCG TATAAGAATTACCGATCCATTAATTACCTACATTGCTATGGTTTCGGTGT ACAATGGCTTGGTGCCATGCTTCTCGTCGCTTATACCgccaaattatttt tcatgccCGCTTTTAAGATCATTAATGATCATtggcaaaaaattgacttc atggTCGTTATAATCCTACCTTACTTAGCTTTTGGTTTATCACAAACAAC AGTTGGTAGTCTTTTCTGCGACTCGTACCTTCTCAGTGATATGTATGTCA AAATGATGTTTACAGCCGGCTACCAAATCCCGCCCGTTCTTCTCATAGCC AAATTAGTGGATAATAAAATGAAAGGAACCGCCCAATCTCTATGCAGCAT GTGTCAGAAACTTAGTGCCATCATTATTGGTGCTTTAGGAACAATTTTTG TCAATCATCAAGAACCTTTTATGTTTTGCTTAATGTTGATTGGTGTATTT TTGGTTGCCATGGCGATCTGGAAACGTCAACTTTTTGTCAATCTTTGATT TACTTTTACTGTAGTTTTACATttgatttaatttcatttcatttatgTAC CTTAACGGACATTTTACGCCGGCCCCAATTTTACGCTGAATAATGGCCGG TGTAAAAGAGTCAGTGTAAAAGGGTCGGTGTAAAAAGGAccgataagatt tttttttaagcaTTCTTAGTTAGATTTGGGAAAAAGTTAATTTATCGAAA ACACTCG

Coding sequence (CDS) from alignment at sc0000077:148704..151110+

>TCONS_00007455 ID=TCONS_00007455|Name=TCONS_00007455|organism=Clytia hemisphaerica|type=CDS|length=1275bp|location=Sequence derived from alignment at sc0000077:148704..151110+ (Clytia hemisphaerica)
ATGAAGGAAGAGACGAAAGACAACACACAAGAAGAAGAGATCGAACCAGC
TTCAAAGggtgttgtttttctcttctgtttCATGTTACTCACTAAAGGAA
TCACAGCGtgtattttccagaccaccacTTATTTTTTCATGCTACGAATC
ATGGATGGGAAAATTGAACAGGCAAATTATCTATACACGACACTATCAAC
CGTCAAAGCGATTACCAAATTCATTGGTGTTTTTATATGTGGTCTGGCTA
TCGATAGTCAAAAAATGAAGTTACGAACAATAATGCAAATCTTCACAACC
TTTCACACACTAGGCTTCATTTTCTCGTTTTTTCCAAATATCCATTTGTT
GTTTATTGGAAATATATTTCGCGAATTCGGTGCCGGTTACATTATCGTAG
TGAAAGTGAAACTAACATTTAGCAAAAAGCAATCTTCTTTCGCGTTGGTT
TGTACGGTTTTCGCCAAAATCATGGGCATTATCGCCGGCtcattattatc
aattttcgTTATCCCGAAAGTTGAATTCAAGattggaaattttgatgtcT
GGTATGGGAATTTTCCTTGCTTGGTTTCGTTTACTCTTTATTTCGTCATC
TTGATCTTATGTTCTAACCTCATGACTGATAACGATGACCCGATACAAAT
CCTAAAACGCATTAATAAACGGAAGAAAGAAAAATCCTTTTGGCGGAACG
GTTTTGAACTTTGTAAAAATATCGCGTACCTTGTTATACTAATGTTTAGT
ATATATTTCTACATGGTGGTAGAGGCGTATAAGAATTACCGATCCATTAA
TTACCTACATTGCTATGGTTTCGGTGTACAATGGCTTGGTGCCATGCTTC
TCGTCGCTTATACCgccaaattatttttcatgccCGCTTTTAAGATCATT
AATGATCATtggcaaaaaattgacttcatggTCGTTATAATCCTACCTTA
CTTAGCTTTTGGTTTATCACAAACAACAGTTGGTAGTCTTTTCTGCGACT
CGTACCTTCTCAGTGATATGTATGTCAAAATGATGTTTACAGCCGGCTAC
CAAATCCCGCCCGTTCTTCTCATAGCCAAATTAGTGGATAATAAAATGAA
AGGAACCGCCCAATCTCTATGCAGCATGTGTCAGAAACTTAGTGCCATCA
TTATTGGTGCTTTAGGAACAATTTTTGTCAATCATCAAGAACCTTTTATG
TTTTGCTTAATGTTGATTGGTGTATTTTTGGTTGCCATGGCGATCTGGAA
ACGTCAACTTTTTGTCAATCTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004205XLOC_004205Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007455-proteinTCONS_00007455-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007455-exon-sc0000077-1491911889:148704..149259TCONS_00007455-exon-sc0000077-1491911889:148704..149259Clytia hemisphaericaexon
TCONS_00007455-exon-sc0000077-1510915933:148704..149259TCONS_00007455-exon-sc0000077-1510915933:148704..149259Clytia hemisphaericaexon
TCONS_00007455-exon-sc0000077-1575043694:148704..149259TCONS_00007455-exon-sc0000077-1575043694:148704..149259Clytia hemisphaericaexon
TCONS_00007455-exon-sc0000077-1491911889:149339..151110TCONS_00007455-exon-sc0000077-1491911889:149339..151110Clytia hemisphaericaexon
TCONS_00007455-exon-sc0000077-1510915933:149339..151110TCONS_00007455-exon-sc0000077-1510915933:149339..151110Clytia hemisphaericaexon
TCONS_00007455-exon-sc0000077-1575043694:149339..151110TCONS_00007455-exon-sc0000077-1575043694:149339..151110Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000077supercontigsc0000077:148704..151110 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.200912 0.114287 0.151655 0.0927319 0 0 0.0430507 0.0201518 0 0.0174759 0 0.0223011 0.0445401 0 0 0 0 0.0128825 0 0 0.420882 0.28425 6.25817 7.78391 11.0012 9.49748 30.6254 22.7368 0.0929154 0.0757328
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR020846MFS_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007455 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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