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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007455 ID=TCONS_00007455|Name=TCONS_00007455|organism=Clytia hemisphaerica|type=transcript|length=2328bp tAAAAACCTCAGACTCAAGCTGCatcatttttattcttttcGGGATATTT TTATACTTTAAAAGTGTGAACTGTGAACTGTCCAGGTTAtgtgtttttta atgaaattttaattGAAACGAAAAGGAGGTTGAAATGGAACGCTAGATGA AGAAGTCGCGTGCTAACTGAAATATCGAACCAAACAAATTGTCTTTTGGT CTTTGGAATCAAAAAAATGGAGAATCAGGCAATTGATGAACTATACTGAT CGAAGGATTTACGGAGGACAAAAAATCCAAATTCgtgaatttagaaaaat aagaatttacgAAGTGACGGAAAAATTATACGATTGACCAACAAAGGTGT TTCGATTCATTCCCGGTCTCTCACTTGCTTTCCAAGTGCGCTAcaattaa acgattttttacGAACACAATAGAGTTTTACGAACTTGACGAGTAATAGA GTTTTACGAACTTGACGAGTAATAGAGTTTTACGAACTTGACGAGTAACA GAGTTTTACGGACTTGACGAATAATAGAGTTTTACGGACTGAGGAGCAAA ACAGAGTTTTACGAACTTGACAAATAATAGAGTTTTACGAACTGAGGAGC AAAAGGTTTTACGAACTCGATGAATAATAGAGTTTTACGAACTTGGGAAC AATAGAGTTTTACGAACTGCAGAGCAAAACAGAGGTTTACGAAGTGAGGA ATAAAATAGAGTTTTACGAACTTGAGAATATAATAGAGTTTTACGGGCTG AGGAACAAAACAGAATTTTACGAACTGAGGAATAATAAAGGAACAATTAA TTTTCACAAACTTCGTCAGTTTGATAAAGTTTGTGAAGACCAAAATGAAG GAAGAGACGAAAGACAACACACAAGAAGAAGAGATCGAACCAGCTTCAAA GggtgttgtttttctcttctgtttCATGTTACTCACTAAAGGAATCACAG CGtgtattttccagaccaccacTTATTTTTTCATGCTACGAATCATGGAT GGGAAAATTGAACAGGCAAATTATCTATACACGACACTATCAACCGTCAA AGCGATTACCAAATTCATTGGTGTTTTTATATGTGGTCTGGCTATCGATA GTCAAAAAATGAAGTTACGAACAATAATGCAAATCTTCACAACCTTTCAC ACACTAGGCTTCATTTTCTCGTTTTTTCCAAATATCCATTTGTTGTTTAT TGGAAATATATTTCGCGAATTCGGTGCCGGTTACATTATCGTAGTGAAAG TGAAACTAACATTTAGCAAAAAGCAATCTTCTTTCGCGTTGGTTTGTACG GTTTTCGCCAAAATCATGGGCATTATCGCCGGCtcattattatcaatttt cgTTATCCCGAAAGTTGAATTCAAGattggaaattttgatgtcTGGTATG GGAATTTTCCTTGCTTGGTTTCGTTTACTCTTTATTTCGTCATCTTGATC TTATGTTCTAACCTCATGACTGATAACGATGACCCGATACAAATCCTAAA ACGCATTAATAAACGGAAGAAAGAAAAATCCTTTTGGCGGAACGGTTTTG AACTTTGTAAAAATATCGCGTACCTTGTTATACTAATGTTTAGTATATAT TTCTACATGGTGGTAGAGGCGTATAAGAATTACCGATCCATTAATTACCT ACATTGCTATGGTTTCGGTGTACAATGGCTTGGTGCCATGCTTCTCGTCG CTTATACCgccaaattatttttcatgccCGCTTTTAAGATCATTAATGAT CATtggcaaaaaattgacttcatggTCGTTATAATCCTACCTTACTTAGC TTTTGGTTTATCACAAACAACAGTTGGTAGTCTTTTCTGCGACTCGTACC TTCTCAGTGATATGTATGTCAAAATGATGTTTACAGCCGGCTACCAAATC CCGCCCGTTCTTCTCATAGCCAAATTAGTGGATAATAAAATGAAAGGAAC CGCCCAATCTCTATGCAGCATGTGTCAGAAACTTAGTGCCATCATTATTG GTGCTTTAGGAACAATTTTTGTCAATCATCAAGAACCTTTTATGTTTTGC TTAATGTTGATTGGTGTATTTTTGGTTGCCATGGCGATCTGGAAACGTCA ACTTTTTGTCAATCTTTGATTTACTTTTACTGTAGTTTTACATttgattt aatttcatttcatttatgTACCTTAACGGACATTTTACGCCGGCCCCAAT TTTACGCTGAATAATGGCCGGTGTAAAAGAGTCAGTGTAAAAGGGTCGGT GTAAAAAGGAccgataagatttttttttaagcaTTCTTAGTTAGATTTGG GAAAAAGTTAATTTATCGAAAACACTCG Run BLAST on NCBI protein sequence of TCONS_00007455-protein >TCONS_00007455-protein ID=TCONS_00007455-protein|Name=TCONS_00007455-protein|organism=Clytia hemisphaerica|type=polypeptide|length=424bp
MKEETKDNTQEEEIEPASKGVVFLFCFMLLTKGITACIFQTTTYFFMLRI MDGKIEQANYLYTTLSTVKAITKFIGVFICGLAIDSQKMKLRTIMQIFTT FHTLGFIFSFFPNIHLLFIGNIFREFGAGYIIVVKVKLTFSKKQSSFALV CTVFAKIMGIIAGSLLSIFVIPKVEFKIGNFDVWYGNFPCLVSFTLYFVI LILCSNLMTDNDDPIQILKRINKRKKEKSFWRNGFELCKNIAYLVILMFS IYFYMVVEAYKNYRSINYLHCYGFGVQWLGAMLLVAYTAKLFFMPAFKII NDHWQKIDFMVVIILPYLAFGLSQTTVGSLFCDSYLLSDMYVKMMFTAGY QIPPVLLIAKLVDNKMKGTAQSLCSMCQKLSAIIIGALGTIFVNHQEPFM FCLMLIGVFLVAMAIWKRQLFVNL Run BLAST on NCBI transcript from alignment at sc0000077:148704..151110+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007455 ID=TCONS_00007455|Name=TCONS_00007455|organism=Clytia hemisphaerica|type=transcript|length=2407bp|location=Sequence derived from alignment at sc0000077:148704..151110+ (Clytia hemisphaerica) tAAAAACCTCAGACTCAAGCTGCatcatttttattcttttcGGGATATTT
TTATACTTTAAAAGTGTGAACTGTGAACTGTCCAGGTTAtgtgtttttta
atgaaattttaattGAAACGAAAAGGAGGTTGAAATGGAACGCTAGATGA
AGAAGTCGCGTGCTAACTGAAATATCGAACCAAACAAATTGTCTTTTGGT
CTTTGGAATCAAAAAAATGGAGAATCAGGCAATTGATGAACTATACTGAT
CGAAGGATTTACGGAGGACAAAAAATCCAAATTCgtgaatttagaaaaat
aagaatttacgAAGTGACGGAAAAATTATACGATTGACCAACAAAGGTGT
TTCGATTCATTCCCGGTCTCTCACTTGCTTTCCAAGTGCGCTAcaattaa
acgattttttacGAACACAATAGAGTTTTACGAACTTGACGAGTAATAGA
GTTTTACGAACTTGACGAGTAATAGAGTTTTACGAACTTGACGAGTAACA
GAGTTTTACGGACTTGACGAATAATAGAGTTTTACGGACTGAGGAGCAAA
ACAGAGGTTTACGAACTTGACGAATAATAGAGTTTTACGAACTGAGGAAC
AAAACAGAGGTTTACGAACTTGACGAATAATAGAGTTTTACGAACTTGAC
AAATAATAGAGTTTTACGAACTGAGGAGCAAAAGGTTTTACGAACTCGAT
GAATAATAGAGTTTTACGAACTTGGGAACAATAGAGTTTTACGAACTGCA
GAGCAAAACAGAGGTTTACGAAGTGAGGAATAAAATAGAGTTTTACGAAC
TTGAGAATATAATAGAGTTTTACGGGCTGAGGAACAAAACAGAATTTTAC
GAACTGAGGAATAATAAAGGAACAATTAATTTTCACAAACTTCGTCAGTT
TGATAAAGTTTGTGAAGACCAAAATGAAGGAAGAGACGAAAGACAACACA
CAAGAAGAAGAGATCGAACCAGCTTCAAAGggtgttgtttttctcttctg
tttCATGTTACTCACTAAAGGAATCACAGCGtgtattttccagaccacca
cTTATTTTTTCATGCTACGAATCATGGATGGGAAAATTGAACAGGCAAAT
TATCTATACACGACACTATCAACCGTCAAAGCGATTACCAAATTCATTGG
TGTTTTTATATGTGGTCTGGCTATCGATAGTCAAAAAATGAAGTTACGAA
CAATAATGCAAATCTTCACAACCTTTCACACACTAGGCTTCATTTTCTCG
TTTTTTCCAAATATCCATTTGTTGTTTATTGGAAATATATTTCGCGAATT
CGGTGCCGGTTACATTATCGTAGTGAAAGTGAAACTAACATTTAGCAAAA
AGCAATCTTCTTTCGCGTTGGTTTGTACGGTTTTCGCCAAAATCATGGGC
ATTATCGCCGGCtcattattatcaattttcgTTATCCCGAAAGTTGAATT
CAAGattggaaattttgatgtcTGGTATGGGAATTTTCCTTGCTTGGTTT
CGTTTACTCTTTATTTCGTCATCTTGATCTTATGTTCTAACCTCATGACT
GATAACGATGACCCGATACAAATCCTAAAACGCATTAATAAACGGAAGAA
AGAAAAATCCTTTTGGCGGAACGGTTTTGAACTTTGTAAAAATATCGCGT
ACCTTGTTATACTAATGTTTAGTATATATTTCTACATGGTGGTAGAGGCG
TATAAGAATTACCGATCCATTAATTACCTACATTGCTATGGTTTCGGTGT
ACAATGGCTTGGTGCCATGCTTCTCGTCGCTTATACCgccaaattatttt
tcatgccCGCTTTTAAGATCATTAATGATCATtggcaaaaaattgacttc
atggTCGTTATAATCCTACCTTACTTAGCTTTTGGTTTATCACAAACAAC
AGTTGGTAGTCTTTTCTGCGACTCGTACCTTCTCAGTGATATGTATGTCA
AAATGATGTTTACAGCCGGCTACCAAATCCCGCCCGTTCTTCTCATAGCC
AAATTAGTGGATAATAAAATGAAAGGAACCGCCCAATCTCTATGCAGCAT
GTGTCAGAAACTTAGTGCCATCATTATTGGTGCTTTAGGAACAATTTTTG
TCAATCATCAAGAACCTTTTATGTTTTGCTTAATGTTGATTGGTGTATTT
TTGGTTGCCATGGCGATCTGGAAACGTCAACTTTTTGTCAATCTTTGATT
TACTTTTACTGTAGTTTTACATttgatttaatttcatttcatttatgTAC
CTTAACGGACATTTTACGCCGGCCCCAATTTTACGCTGAATAATGGCCGG
TGTAAAAGAGTCAGTGTAAAAGGGTCGGTGTAAAAAGGAccgataagatt
tttttttaagcaTTCTTAGTTAGATTTGGGAAAAAGTTAATTTATCGAAA
ACACTCG Coding sequence (CDS) from alignment at sc0000077:148704..151110+ >TCONS_00007455 ID=TCONS_00007455|Name=TCONS_00007455|organism=Clytia hemisphaerica|type=CDS|length=1275bp|location=Sequence derived from alignment at sc0000077:148704..151110+ (Clytia hemisphaerica) ATGAAGGAAGAGACGAAAGACAACACACAAGAAGAAGAGATCGAACCAGC TTCAAAGggtgttgtttttctcttctgtttCATGTTACTCACTAAAGGAA TCACAGCGtgtattttccagaccaccacTTATTTTTTCATGCTACGAATC ATGGATGGGAAAATTGAACAGGCAAATTATCTATACACGACACTATCAAC CGTCAAAGCGATTACCAAATTCATTGGTGTTTTTATATGTGGTCTGGCTA TCGATAGTCAAAAAATGAAGTTACGAACAATAATGCAAATCTTCACAACC TTTCACACACTAGGCTTCATTTTCTCGTTTTTTCCAAATATCCATTTGTT GTTTATTGGAAATATATTTCGCGAATTCGGTGCCGGTTACATTATCGTAG TGAAAGTGAAACTAACATTTAGCAAAAAGCAATCTTCTTTCGCGTTGGTT TGTACGGTTTTCGCCAAAATCATGGGCATTATCGCCGGCtcattattatc aattttcgTTATCCCGAAAGTTGAATTCAAGattggaaattttgatgtcT GGTATGGGAATTTTCCTTGCTTGGTTTCGTTTACTCTTTATTTCGTCATC TTGATCTTATGTTCTAACCTCATGACTGATAACGATGACCCGATACAAAT CCTAAAACGCATTAATAAACGGAAGAAAGAAAAATCCTTTTGGCGGAACG GTTTTGAACTTTGTAAAAATATCGCGTACCTTGTTATACTAATGTTTAGT ATATATTTCTACATGGTGGTAGAGGCGTATAAGAATTACCGATCCATTAA TTACCTACATTGCTATGGTTTCGGTGTACAATGGCTTGGTGCCATGCTTC TCGTCGCTTATACCgccaaattatttttcatgccCGCTTTTAAGATCATT AATGATCATtggcaaaaaattgacttcatggTCGTTATAATCCTACCTTA CTTAGCTTTTGGTTTATCACAAACAACAGTTGGTAGTCTTTTCTGCGACT CGTACCTTCTCAGTGATATGTATGTCAAAATGATGTTTACAGCCGGCTAC CAAATCCCGCCCGTTCTTCTCATAGCCAAATTAGTGGATAATAAAATGAA AGGAACCGCCCAATCTCTATGCAGCATGTGTCAGAAACTTAGTGCCATCA TTATTGGTGCTTTAGGAACAATTTTTGTCAATCATCAAGAACCTTTTATG TTTTGCTTAATGTTGATTGGTGTATTTTTGGTTGCCATGGCGATCTGGAA ACGTCAACTTTTTGTCAATCTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00007455-exon-sc0000077-1491911889:148704..149259 | TCONS_00007455-exon-sc0000077-1491911889:148704..149259 | Clytia hemisphaerica | exon |
TCONS_00007455-exon-sc0000077-1510915933:148704..149259 | TCONS_00007455-exon-sc0000077-1510915933:148704..149259 | Clytia hemisphaerica | exon |
TCONS_00007455-exon-sc0000077-1575043694:148704..149259 | TCONS_00007455-exon-sc0000077-1575043694:148704..149259 | Clytia hemisphaerica | exon |
TCONS_00007455-exon-sc0000077-1491911889:149339..151110 | TCONS_00007455-exon-sc0000077-1491911889:149339..151110 | Clytia hemisphaerica | exon |
TCONS_00007455-exon-sc0000077-1510915933:149339..151110 | TCONS_00007455-exon-sc0000077-1510915933:149339..151110 | Clytia hemisphaerica | exon |
TCONS_00007455-exon-sc0000077-1575043694:149339..151110 | TCONS_00007455-exon-sc0000077-1575043694:149339..151110 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000077 | supercontig | sc0000077:148704..151110 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR020846 | MFS_dom |
Blast
The following BLAST results are available for this feature:
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