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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007452 ID=TCONS_00007452|Name=TCONS_00007452|organism=Clytia hemisphaerica|type=transcript|length=1993bpRun BLAST on NCBI protein sequence of TCONS_00007452-protein >TCONS_00007452-protein ID=TCONS_00007452-protein|Name=TCONS_00007452-protein|organism=Clytia hemisphaerica|type=polypeptide|length=512bp MASLTKRKSIEKAGKLQIVVCEYHQDVIQFIHRFIARKKLPFKGIKMIHLRun BLAST on NCBI transcript from alignment at sc0000077:130818..170546+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007452 ID=TCONS_00007452|Name=TCONS_00007452|organism=Clytia hemisphaerica|type=transcript|length=39729bp|location=Sequence derived from alignment at sc0000077:130818..170546+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000077:130818..170546+ >TCONS_00007452 ID=TCONS_00007452|Name=TCONS_00007452|organism=Clytia hemisphaerica|type=CDS|length=10773bp|location=Sequence derived from alignment at sc0000077:130818..170546+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00007452 vs. Swiss-Prot (Human)
Match: CE022 (UPF0489 protein C5orf22 OS=Homo sapiens GN=C5orf22 PE=1 SV=2) HSP 1 Score: 139.813 bits (351), Expect = 1.677e-35 Identity = 73/188 (38.83%), Postives = 119/188 (63.30%), Query Frame = 1
Query: 1177 FILDIDLDYFSVTNPFLQDYTEEEYKELKNIYHIDLPTNKEDQNELAQFVEKSTKKLQSLKRTIQEFATGKPPKEIQ------GNKELVDFLVRLKTRKPNINEEDWDLVHSAGMT---TELPHHISNDTEIDQMLTELKELIQALPHPTLITVARSAIDEYCPPDQVDQIEKKVIDLLTSYYHSVDV 1713
F+LDIDLD+FSV NPF + +T+EEYK L+ +Y P + +L V+ +L+ L+ T + G + +Q G + LV + LK R + D+++VH AG+T +ELPHHIS + EI+ ++ + L++ LP+PTL+T+ARS++D+YCP DQVD I++KV+++L + Y ++D+
Sbjct: 248 FVLDIDLDFFSVKNPFKEMFTQEEYKILQELYQFKKPGTNLTEEDLVDIVDTRIHQLEDLEATFADLCDGDDEETVQRWASNPGMESLVPLVQSLKKR---MEVPDYEMVHQAGLTCDYSELPHHISTEQEIECLIQSVHYLLKNLPNPTLVTIARSSLDDYCPSDQVDTIQEKVLNMLRALYGNLDL 432 HSP 2 Score: 137.887 bits (346), Expect = 7.308e-35 Identity = 76/255 (29.80%), Postives = 133/255 (52.16%), Query Frame = 1
Query: 217 SLTKRKSIEKAGKLQIVVCEYHQDVIQFIHRFIARKKLPFKGIKMIHLDSHPDLAYPDHLLADDCFHKGTLYDQLDIADWILPLMYQGHLRDLVWVRPPWAKQIEDLETPFKIGKHRDDGKLKVTCTEDYFMEDGIYSPEEALQNIQDVNLKVTLVQNLTVDLITRRDNFNQQTIAPSLQKKLKKFENEDDITEVLSVTDKGEEQRTKINISSEEAPRETVSTNSEVDKMKNSNASKITKNVLDNKEGSKDVIEL 981
S R + + KL + V E HQ+V+ FI+R I K LP + +H DSHPDL P ++ AD F K TL+ +L I +WI+P +Y GH ++W P WA+QI + F +GK ++VT T+ YF+ DG+Y PE+ L+N + + L V +V+ + + ++ + + KL ++E+ + + +G E+ T S + + S +SE + + + ++ +L K+G V+++
Sbjct: 4 SAGGRAGLRRYPKLPVWVVEDHQEVLPFIYRAIGSKHLPASNVSFLHFDSHPDLLIPVNMPADTVFDKETLFGELSIENWIMPAVYAGHFSHVIWFHPTWAQQIREGRHHFLVGKDTSTTTIRVTSTDHYFLSDGLYVPEDQLENQKPLQLDVIMVKPYKL----CNNQEENDAVSSAKKPKLALEDSENTASTNCDSSSEGLEKDTATQRSDQTCLEPSCSCSSENQECQTAASTGEILEIL--KKGKAFVLDI 252 The following BLAST results are available for this feature:
BLAST of TCONS_00007452 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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