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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007451 ID=TCONS_00007451|Name=TCONS_00007451|organism=Clytia hemisphaerica|type=transcript|length=814bp
GTTTGATTTCCCCCGTCCCAATTTTCAATTTACAAATATTTAAGAAAAAG
TGATGTTTTcgtcaagaatattttcatgaATTAGCGTCTTGCGAAATGCG
ATATCTACCATATGGTATAAAgagtgttgtttttttctgtgaAAAATCAT
CTTGAACTTTAACTTCAACAAGCAAACACAAGATACAGCACCAGGAGAAG
AATTCAAACCACAAACTAAAATGAAGACCATCATTGCTTTTACACTTTTC
GCCGTTGCTTCGGCCATCACCAACCCACCCATCACTGGAACAACACCACC
AGCTATTCCATGTCCTAATTCATTATGTAACGGAAAATATGATGATAATT
TCGCCTTACCGTACTACAAGAACTATTTTGTCCAATGTGTCGGTGGTTTG
GCTTACTGTCAAGCTTGCTTTCCTCTCTCCCTGGAATTCAGTCAAACTTG
CAACCAATGTTTGTACAGCAAATATGATAACTGTCTGACTACACAAAAAT
GGCACCCAGCCACCACTTTCGCTTGCCCAGACAAATGCCCCCATTATGGA
CCAGAATTCAGTGGAAATATTGAAGATCCAGATCAACCACGACAATATGT
TGCTTGCTGGAAGGGAGTTACTGTCGGATGCGTTGCTTGCCCAggaaatt
tgaaattcaacCAAAAAGAAAACGCTTGCTTGTACGATGGCAAATACCTC
ACCAAGTCATCCCATTAAATTCGGATATAACtgtaattcttttcaaaacg
aATTTGTATTTTGTTATTCAAGTTATTTAAGAATCCTTATAAATTAGACA
TTTTAagttcaaag Run BLAST on NCBI protein sequence of TCONS_00007451-protein >TCONS_00007451-protein ID=TCONS_00007451-protein|Name=TCONS_00007451-protein|organism=Clytia hemisphaerica|type=polypeptide|length=165bp
MKTIIAFTLFAVASAITNPPITGTTPPAIPCPNSLCNGKYDDNFALPYYK
NYFVQCVGGLAYCQACFPLSLEFSQTCNQCLYSKYDNCLTTQKWHPATTF
ACPDKCPHYGPEFSGNIEDPDQPRQYVACWKGVTVGCVACPGNLKFNQKE
NACLYDGKYLTKSSH Run BLAST on NCBI transcript from alignment at sc0000077:120508..121504+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007451 ID=TCONS_00007451|Name=TCONS_00007451|organism=Clytia hemisphaerica|type=transcript|length=997bp|location=Sequence derived from alignment at sc0000077:120508..121504+ (Clytia hemisphaerica)
GTTTGATTTCCCCCGTCCCAATTTTCAATTTACAAATATTTAAGAAAAAG
TGATGTTTTcgtcaagaatattttcatgaATTAGCGTCTTGCGAAATGCG
ATATCTACCATATGGTATAAAgagtgttgtttttttctgtgaAAAATCAT
CTTGAACTTTAACTTCAACAAGCAAACACAAGATACAGCACCAGGAGAAG
AATTCAAACCACAAACTAAAATGAAGACCATCATTGCTTTTACACTTTTC
GCCGGTAAGTTTTTGGATTTCACATTTTTGCATTTCTCTGAATTTTAGTG
CGTATAAGTATGAGTATAAGTATAATAATCTAATTTGCTTTGTGAAATCC
ATTTCCCGTCTCAGACGCAAAAACCTTGCTTCGACCACTGTTATAGCTTC
AACCTTGTAGATTAATATCTGTTCCTTATCTTTACAGTTGCTTCGGCCAT
CACCAACCCACCCATCACTGGAACAACACCACCAGCTATTCCATGTCCTA
ATTCATTATGTAACGGAAAATATGATGATAATTTCGCCTTACCGTACTAC
AAGAACTATTTTGTCCAATGTGTCGGTGGTTTGGCTTACTGTCAAGCTTG
CTTTCCTCTCTCCCTGGAATTCAGTCAAACTTGCAACCAATGTTTGTACA
GCAAATATGATAACTGTCTGACTACACAAAAATGGCACCCAGCCACCACT
TTCGCTTGCCCAGACAAATGCCCCCATTATGGACCAGAATTCAGTGGAAA
TATTGAAGATCCAGATCAACCACGACAATATGTTGCTTGCTGGAAGGGAG
TTACTGTCGGATGCGTTGCTTGCCCAggaaatttgaaattcaacCAAAAA
GAAAACGCTTGCTTGTACGATGGCAAATACCTCACCAAGTCATCCCATTA
AATTCGGATATAACtgtaattcttttcaaaacgaATTTGTATTTTGTTAT
TCAAGTTATTTAAGAATCCTTATAAATTAGACATTTTAagttcaaag Coding sequence (CDS) from alignment at sc0000077:120508..121504+ >TCONS_00007451 ID=TCONS_00007451|Name=TCONS_00007451|organism=Clytia hemisphaerica|type=CDS|length=996bp|location=Sequence derived from alignment at sc0000077:120508..121504+ (Clytia hemisphaerica)
ATGAAGACCATCATTGCTTTTACACTTTTCGCCGTTGCTTCGGCCATCAC
CAACCCACCCATCACTGGAACAACACCACCAGCTATTCCATGTCCTAATT
CATTATGTAACGGAAAATATGATGATAATTTCGCCTTACCGTACTACAAG
AACTATTTTGTCCAATGTGTCGGTGGTTTGGCTTACTGTCAAGCTTGCTT
TCCTCTCTCCCTGGAATTCAGTCAAACTTGCAACCAATGTTTGTACAGCA
AATATGATAACTGTCTGACTACACAAAAATGGCACCCAGCCACCACTTTC
GCTTGCCCAGACAAATGCCCCCATTATGGACCAGAATTCAGTGGAAATAT
TGAAGATCCAGATCAACCACGACAATATGTTGCTTGCTGGAAGGGAGTTA
CTGTCGGATGCGTTGCTTGCCCAggaaatttgaaattcaacCAAAAAGAA
AACGCTTGCTTGTACGATGGCAAATACCTCACCAAGTCATCCCATTAAAT
GAAGACCATCATTGCTTTTACACTTTTCGCCGTTGCTTCGGCCATCACCA
ACCCACCCATCACTGGAACAACACCACCAGCTATTCCATGTCCTAATTCA
TTATGTAACGGAAAATATGATGATAATTTCGCCTTACCGTACTACAAGAA
CTATTTTGTCCAATGTGTCGGTGGTTTGGCTTACTGTCAAGCTTGCTTTC
CTCTCTCCCTGGAATTCAGTCAAACTTGCAACCAATGTTTGTACAGCAAA
TATGATAACTGTCTGACTACACAAAAATGGCACCCAGCCACCACTTTCGC
TTGCCCAGACAAATGCCCCCATTATGGACCAGAATTCAGTGGAAATATTG
AAGATCCAGATCAACCACGACAATATGTTGCTTGCTGGAAGGGAGTTACT
GTCGGATGCGTTGCTTGCCCAggaaatttgaaattcaacCAAAAAGAAAA
CGCTTGCTTGTACGATGGCAAATACCTCACCAAGTCATCCCATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007451-exon-sc0000077-1491911889:120508..120761 | TCONS_00007451-exon-sc0000077-1491911889:120508..120761 | Clytia hemisphaerica | exon |
| TCONS_00007451-exon-sc0000077-1510915933:120508..120761 | TCONS_00007451-exon-sc0000077-1510915933:120508..120761 | Clytia hemisphaerica | exon |
| TCONS_00007451-exon-sc0000077-1575043694:120508..120761 | TCONS_00007451-exon-sc0000077-1575043694:120508..120761 | Clytia hemisphaerica | exon |
| TCONS_00007451-exon-sc0000077-1491911889:120945..121504 | TCONS_00007451-exon-sc0000077-1491911889:120945..121504 | Clytia hemisphaerica | exon |
| TCONS_00007451-exon-sc0000077-1510915933:120945..121504 | TCONS_00007451-exon-sc0000077-1510915933:120945..121504 | Clytia hemisphaerica | exon |
| TCONS_00007451-exon-sc0000077-1575043694:120945..121504 | TCONS_00007451-exon-sc0000077-1575043694:120945..121504 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000077 | supercontig | sc0000077:120508..121504 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002557 | Chitin-bd_dom |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005576 | extracellular region |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006030 | chitin metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008061 | chitin binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006030 |
chitin metabolic process |
| cellular_component |
GO:0005576 |
extracellular region |
| molecular_function |
GO:0008061 |
chitin binding |
Blast
The following BLAST results are available for this feature:
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