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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007449 ID=TCONS_00007449|Name=TCONS_00007449|organism=Clytia hemisphaerica|type=transcript|length=720bp
CCAGAccttaaaacattaaaaagaaaaaaaactaaaaagaaaataatttc
agaACCATCAGATCATGCTTGGGCAGTACTCTCGGAACCCTCTGGTGAAG
AATTATCTATACAGACTTGCTGAGCGACAGAAACCTATTGATACGGATAA
GTGGTATTATTTGAATAGTGAGCAATTTCCAGCTCATTTACAAAGCAAGT
TTCTTCAAAATTCATTGGACGAAGAAACGGAAGAATTCTTGGAGAATTGT
TATGAGAAATCTGATTGGATATTCACTCAAATCTTCCACAATGTTTTCAG
AGTTGTGTTAGGGTGGTTCATGTCAATGACAACAGTCAATggGTTATTAA
ACCGTGGTTCCATGTTCGTCTTCTCGGAGAACCAATTCTTGGAACTACTC
AACGTCAATAGCTCAAGTTACCATGGAAACTCGTATCTAGATCTCGGCGC
CGGTGATGGGAAAACAACGGGAAAGTTGATCAAATATTTCGACCAATCAT
ACGCGACCGAACAGTCTCCCACAATGCAATGGAGGCTCAAAGAAAAAGGC
TTTCAGATTCTCGAGATAGACCAATGGCAAACGCCCAAAAAATACTCCTT
GATCACCGCCCTCAATTTGTTAGATCGCATCGACCATCCGGTGAAGCTGG
TCAACGAATTACGGACATCCATTGCAGACGATGGATTCGTCATATTAGCG
ATTGTGTTGCCCTATAATCC Run BLAST on NCBI transcript from alignment at sc0000077:115490..124625+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007449 ID=TCONS_00007449|Name=TCONS_00007449|organism=Clytia hemisphaerica|type=transcript|length=9136bp|location=Sequence derived from alignment at sc0000077:115490..124625+ (Clytia hemisphaerica)
CCAGAccttaaaacattaaaaagaaaaaaaactaaaaagaaaataatttc
agaACCATCAGATCATGCTTGGGCAGTACTCTCGGAACCCTCTGGTGAAG
AATTATCTATACAGACTTGCTGAGCGACAGAAACCTATTGATACGGATAA
GGTATTATTTATGTACCTTAGAAATTTTTagtgtcatttttcaatttatt
catgatattcatgacaatgttttctacggaaataccccggttttagctag
tacatgttttttttataagcaagtgtatgccccttggtcaggctcgtgta
tacttaagttcttaaagcatccaggcataggttatgcttattatatgctt
atgaatcatgcttatgattcacctcgagccaagtttttagtgaaattttg
taaaaatttgttcagattttgggagcagtgaaTCAGGGAAACCgtggaaa
gtcttttttttttacttgacatctaccaaacctttttaaacagataaaaa
tgacaactggaaaaatatttcaggctgaaatatatgcttatgttatgttt
aggaattttgcaaatctgagccttcatatgcttataagcgttatgcttat
aaagaaaaacatgtagtggcaaatttaaaccagacaaaagttgtataaaa
ttttcttttgcgtCTTTTGTCTTtgcgtagaaaacattacgtcatgaata
tcatgaattaaaagAAGTTCGGACAAGCTTTTTTTCGCACTTCTATTCGC
TTCTATTTAGCTAATTTTAGTTTTGTTTGAATGCTTGAATCCAAACGTAT
ATACCGTTCCtaaaaattctgaattttctttctcaacTATTATGGTGCtc
taaattatcttttcaacagtaTATGTGAGAATTCGTTTGAAAATGGCAAG
GAAAACAAAGATTAGCGCACACTTCAAGCAAATAGATTTAAGTAAGgtgg
aaataaaatcctaatCCGTTCAAATACTTCCCAAGTATATAGATCATACC
AATACCctactggtctgtaaaatacacaaacagagGCAATATTGTGAAAC
AGCTTGATTTTCTATTCTTTTAGTGGTATTATTTGAATAGTGAGCAATTT
CCAGCTCATTTACAAAGCAAGTTTCTTCAAAATTCATTGGACGAAGAAAC
GGAAGAATTCTTGGAGAATTGTTATGAGAAATCTGATTGGATATTCACTC
AAATCTTCCACAATGTTTTCAGAGTTGTGTTAGGGTGGTTCATGTCAATG
ACAACAGTCAATgggtaagaatattttttggacctaccccggagGGCCTT
TAATTTAACCcgtgtccgttcgttcgtctgttaccagcttttctcgcgat
tgactcattagttttttttcctgatttttggcacaacgatgcaaaatggc
aatacccaaaatgtgatggagcccgattttagaaataaaaaaattttagg
ctaaaaagtgcctaaaaatgagGTTTTAATACTTTGTGTGGAATTGCTTG
ATTAGTTCTTTCTGATTTTCGGCAAAAATATAGAGGATAAATTCCCTTCT
GTTATTTtaagggaaaatgagcatttctcgcaattggcttggtatttttt
tctgattttctaatttgtatttttctcaTTACTGTCGCCATGTTTTCTGA
tgttctatttttattttctatattttctatcaggtaggtccattcagcat
gtagcttgttctCCACTGTGAAGTCCTAACCCCCAAATGTGTGAAACAAT
TGAAAGCTAAAATGGTTGATACTATCAGATAAAGCATTAAATTCTGAGCA
AAAGAACAATGTTACAACAAGTCTTGTACTCAAACATATAAAGAAATACA
CGCTTTTGAAGTATAAAATTCTGTCAGTTAAAGTACGATTGACGTAAAAT
TTTGTCCAAAACGTAACAGATTTCACAGGATGTAATTTTGAACTCTAAAT
GACCATTTTTACTCAGCGAATGTCATGCTCCATTCGTTTAATTAGTcgat
tttttactcattttgagGGATAGGAGTTTGCCTACGATTTCAGTTTTTCG
GCCATAAAAACTTATGCTAGGCCTTATTCCTGAAGtccctctcaaaaaag
tttgataatcCTATCTTCTTTCGAACCAATCACCAGCGGTTGCGTCCCAC
AAAAGATGTTACAGATCGTGAGGATTGGCCCCCGACTATAATAAGTTAAG
TTTATCCTCATTGACTTTTGAAATGAACGAAGAAAAAGCTTTCTTGACAG
AAGCTAcattaagagaagaaattttggcgaatgagccctttcgcggaaag
aaattttggcgaatttggcaaaaattttaggcacttcgccaaattcgcca
aaattcatttccgccaaaatttcttaccTTAAGCTCTTCGTTGTGCCTAA
AATTTAAAGGCTGGTTGCTAGGTAGCAATCAGGAAATAGATAGttattgc
aataaaaaagttgatataaATAAACGAaataataaaccagccgaggctgg
aaggtcagccaatagagcttagccagatagctttaataagtgggttaaca
gatgtaagagatgcaatgaaacagagtagactaaatatgttgaataatgt
acaaaatgagANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaac
tgggagtcctctcttctgtgccaagcactggcagtgttttttaaacttta
aaacaatgttaaatgaagaccagattgatctgtttgttatggctgtgcaa
gatgtgacgagagtgtgcacagcatgttgtgtaacttgacggcagcCCCC
TTtcggcaagtctgataagagatatctataaactgttatcggcattcatt
ccattccatcattcagtcaaaatgtgcgccaaggttagaaaaggttagaa
aaacacaatctgcgtccggaactgcgtgaaaaatagtttgatcNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNatgatcaaattccaaagaccatttgtcataattttgcaagtccaat
aataggagatgtgatgtcatcatttggttcccgtcatctgatttaCGGTT
ACGAGCTGGAGGGTcagaaagcttttccgctgctttgctggatttccact
gtcgacctctgcatgctctgtgtttaaaagttttcaaatcgaagtagaga
gccgcatgctaatggagagtaaaccgaaaacaccaAATTTATCCACggtt
ctcaattttaaaattcggatcagtccacacgaattcccttttaacaagat
gtatagctgcttcttaacagaaaaatattttcgactgaccggctgaacga
ctcccactttttaaagtagaaatgacgggaaccaaacaggttttgcgatt
cgcctttatcacaaacacgaccaagtccaaaaaagcacgattgcatccag
tctttatatcaaatttatacagtagctgtacttttgtaaactttatcaaa
tcccaataacattataacaccatcaNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaatatgttttta
ttgcaaaaactattaaaaagcagcaataaaaagtatatatcagaaaattc
aacataaacaaaaacttgagcaaacggctttaaacctttaAAGGatatag
aaaaagaatccccttgatgaaaatcatgtgtttgatttgctgagttaaaa
aaataaatgacagaaattgaagcttgcaacagatttacactggacactgg
aaatactttggtacaatgttatcacatctgactatcgcttgagccgccat
cttgaaactacattatgatctgtaaaaacaacgcacgctaaaagtaccca
aaaagttaacccgatcggaagaaagtttagaaatcaaagtgagatcggaa
aatcggattttttttttgccgtcttatgatgatgatgatggaaaatttta
cctatttgaatgctcagcttaggctgaccaattatgAATGTTACAAACAA
ACTAATTACtattatcaaaaattacaaattacaGTAAGAATGCCTCTTAT
ATGTCTCTCATCCGAATTGTTTGATTTCCCCCGTCCCAATTTTCAATTTA
CAAATATTTAAGAAAAAGTGATGTTTTcgtcaagaatattttcatgaATT
AGCGTCTTGCGAAATGCGATATCTACCATATGGTATAAAgagtgttgttt
ttttctgtgaAAAATCATCTTGAACTTTAACTTCAACAAGCAAACACAAG
ATACAGCACCAGGAGAAGAATTCAAACCACAAACTAAAATGAAGACCATC
ATTGCTTTTACACTTTTCGCCGGTAAGTTTTTGGATTTCACATTTTTGCA
TTTCTCTGAATTTTAGTGCGTATAAGTATGAGTATAAGTATAATAATCTA
ATTTGCTTTGTGAAATCCATTTCCCGTCTCAGACGCAAAAACCTTGCTTC
GACCACTGTTATAGCTTCAACCTTGTAGATTAATATCTGTTCCTTATCTT
TACAGTTGCTTCGGCCATCACCAACCCACCCATCACTGGAACAACACCAC
CAGCTATTCCATGTCCTAATTCATTATGTAACGGAAAATATGATGATAAT
TTCGCCTTACCGTACTACAAGAACTATTTTGTCCAATGTGTCGGTGGTTT
GGCTTACTGTCAAGCTTGCTTTCCTCTCTCCCTGGAATTCAGTCAAACTT
GCAACCAATGTTTGTACAGCAAATATGATAACTGTCTGACTACACAAAAA
TGGCACCCAGCCACCACTTTCGCTTGCCCAGACAAATGCCCCCATTATGG
ACCAGAATTCAGTGGAAATATTGAAGATCCAGATCAACCACGACAATATG
TTGCTTGCTGGAAGGGAGTTACTGTCGGATGCGTTGCTTGCCCAggaaat
ttgaaattcaacCAAAAAGAAAACGCTTGCTTGTACGATGGCAAATACCT
CACCAAGTCATCCCATTAAATTCGGATATAACtgtaattcttttcaaaac
gaATTTGTATTTTGTTATTCAAGTTATTTAAGAATCCTTATAAATTAGAC
ATTTTAagttcaaagaaaatattatagTCAAATCAAGATATAAAAACAAA
TTCTTTCTTTCACCCTGTCACGCTGAATCTAACGGAAACATGAAATTTAc
gattttctgactttcaaaattcgacttaaaaagccccccccccccctNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNtaaaaacccccccccccccccttgataACGTAATTT
TGACCTTGTTAAGCAAGAAGTTTCAATGGGCtgctccaaaaaaaattttt
gccccGTGttgaggaggtcatttttaGAAGGCCAAAATATTCATGACCTT
CCCCCCCTggatttttaagccaatttttgaGCTACCATCTTGGATTTTTG
CCTAAAATTCCCTGGatttttcacacattttcaTTGACCCCTATggattt
tctttgttcttaaGGGGTATCCCCctggatttttcaattttccagaCCCT
GCTCCTCAACGTGAGGGTGCGGAtgttttctggaatagcccaattctACG
TAACATTTGGAAATTTCTTGTATAATACTGTAAGTAAGTTGGCTGAGCCC
ATTTTAACCCTCAGCTCATGGACTTAATAATGAGACTTAATGTGCTCGGA
ATCTCTTTCAGGTTATTAAACCGTGGTTCCATGTTCGTCTTCTCGGAGAA
CCAATTCTTGGAACTACTCAACGTCAATAGCTCAAGTTACCATGGAAACT
CGTATCTAGATCTCGGCGCCGGTGATGGGAAAACAACGGGAAAGTTGATC
AAATATTTCGACCAATCATACGCGACCGAACAGTCTCCCACAATGCAATG
GAGGCTCAAAGAAAAAGGCTTTCAGTAAGACGCAattaaaattactttta
aaggttttatttttacatgagtgatcccgtttcatatcagacacatgttt
catatcaggacggaTTCTCCCTATTAGTATATTGTACCGataagcaaaaa
attgtttttctttaccTCTTTCTgatgaccaatcttgctccacattcgtt
tTGATTTAGTGTGAAAAAGcttgcaaattaaaattgatgagcaaTTGATA
TCGctcttatttaaaacaaaaatctttaaaccTAAAATAGCTCTACAATC
AGTTCccaaatacttggcacaaaagggaaattccccacgaaattttataa
ccacaaacaatttggaagcgctctaaattaggttggaaaggtagggtttt
aactctgagttttaacgctagactgaagacttaggaccttgagatctgag
gatccaaagttcaaaaatggtccggtagggcttgaaatatagcctagaaa
ccaacaaatccctcccagattgaaatattcgatgaaatcaagttgaatgT
CCGAAAtcgacattctcgctcgaacttcaattttcgaaaaatggtaaaat
agccaaaattgccaatatctTATGGCACTGGTTGTAGATCTAGATCCAGC
TATAAAAATCTTGTTAGGCCATACCAAACTATTAATGTGTCCTATTTTTC
ATTCCAGTTAAAAAAATCTAACCATCCCTTAGCGATGtcttgaaaatctt
attttttgcagtttttttaCAAAGTCACGATCGTGGTGGTTTccattact
ttgaataaacgcccacttttttccttttaggaggaggggcgtttattcga
ttTTCGTTTTCTTAGACAGCGAATACGTCATTTTATTGGAGATGTAAAAA
CAGTCGAAATTAGTTTGAATACTGACaggataaaaaaattattaacatTC
GCCTATCTGCTTTTTCCTCCATATGATTCTTCCTAACAATTATTGCTTCT
ATAACGCCCTCCTTGAGGGGAGGTATTTATTTGATGGGGGCGTTTCGAAG
AATGGTAACTAAGAATGGTATGGTTTGATggtttgaatatggggggtgga
ggatataacaattttcagtgatttacccccccccccccggacaaagtgac
ttttggtcccccggacaacgggttttcccccccccccggacaaagtgact
tttggtcccccggacaacgggttttcccccccccccggacaaagtgactt
ttggtcccccggacaacgggttttcccccccccccggacaaagtgacttt
tggtcccccggacaacgggttttaccccctccccggacaaggcaaaattt
gatgatttttttttaaaaaatttttttaaatttttccccccccccccccc
cccccatgtacggacattttctggaagagcccactgtgaaatagattttt
tttctgagatAACATTTAGCTGAGTCAGAAAAACTTGTTTCTTGGAAACT
CTCATGGTATTAAGAGCCAGTACCCCTATCGAAATATTTTTCCGCATATC
TTCACGCATATCTTCACACCAGGATTCTCGAGATAGACCAATGGCAAACG
CCAAACAAATACTCCTTGATCACCGCCCTCAATTTGTTAGATCGAATCGA
CCATCCGGTGAAGCTGGTCAACGAATTACGGACATCCATTTCAGACGATG
GATTCGTCATATTAGCGATTGTGTTGCCCTATAACCCTTGTTATGAAACT
GGTATGTTAAAgtcttttttgataaatatttgTCTAACATGCTAGACGAC
TAAAGCCGGTCTCCGCTTgtgcgcgctgcgatcgcaccttttggcctcaa
tcctttttgcttggaaaaaagataacgtcataaaaatgtagcgcgcgctc
gaaaaaaaagttgaacacatttcaacttttttcaaccgttacgtcagatc
gtgccaatggaattgcttcatttttcaaccgaccaatagcgtggaagcat
TGATCGAAAAAGGGCGATGAAAGCGCCTGCAAATGAAGACTGGCCTTAAT
ACAAGGTAggaaacccgggggggggtacNGGAGCCACTATCGAAATGTTT
TTCCCCTTATCTTCACACCAGGATTCTCGAGATAGACCAATGGCAAACGC
CCAAAAAATACTCCTTGATCACCGCCCTCAATTTGTTAGATCGCATCGAC
CATCCGGTGAAGCTGGTCAACGAATTACGGACATCCATTGCAGACGATGG
ATTCGTCATATTAGCGATTGTGTTGCCCTATAATCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007449-exon-sc0000077-1491911889:115490..115640 | TCONS_00007449-exon-sc0000077-1491911889:115490..115640 | Clytia hemisphaerica | exon |
| TCONS_00007449-exon-sc0000077-1510915933:115490..115640 | TCONS_00007449-exon-sc0000077-1510915933:115490..115640 | Clytia hemisphaerica | exon |
| TCONS_00007449-exon-sc0000077-1575043694:115490..115640 | TCONS_00007449-exon-sc0000077-1575043694:115490..115640 | Clytia hemisphaerica | exon |
| TCONS_00007449-exon-sc0000077-1491911889:116563..116753 | TCONS_00007449-exon-sc0000077-1491911889:116563..116753 | Clytia hemisphaerica | exon |
| TCONS_00007449-exon-sc0000077-1510915933:116563..116753 | TCONS_00007449-exon-sc0000077-1510915933:116563..116753 | Clytia hemisphaerica | exon |
| TCONS_00007449-exon-sc0000077-1575043694:116563..116753 | TCONS_00007449-exon-sc0000077-1575043694:116563..116753 | Clytia hemisphaerica | exon |
| TCONS_00007449-exon-sc0000077-1491911889:122151..122363 | TCONS_00007449-exon-sc0000077-1491911889:122151..122363 | Clytia hemisphaerica | exon |
| TCONS_00007449-exon-sc0000077-1510915933:122151..122363 | TCONS_00007449-exon-sc0000077-1510915933:122151..122363 | Clytia hemisphaerica | exon |
| TCONS_00007449-exon-sc0000077-1575043694:122151..122363 | TCONS_00007449-exon-sc0000077-1575043694:122151..122363 | Clytia hemisphaerica | exon |
| TCONS_00007449-exon-sc0000077-1491911889:124461..124625 | TCONS_00007449-exon-sc0000077-1491911889:124461..124625 | Clytia hemisphaerica | exon |
| TCONS_00007449-exon-sc0000077-1510915933:124461..124625 | TCONS_00007449-exon-sc0000077-1510915933:124461..124625 | Clytia hemisphaerica | exon |
| TCONS_00007449-exon-sc0000077-1575043694:124461..124625 | TCONS_00007449-exon-sc0000077-1575043694:124461..124625 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000077 | supercontig | sc0000077:115490..124625 + |
Blast
BLAST of TCONS_00007449 vs. Swiss-Prot (Human)
Match: METL9 (Methyltransferase-like protein 9 OS=Homo sapiens GN=METTL9 PE=2 SV=1) HSP 1 Score: 171.785 bits (434), Expect = 4.391e-51 Identity = 88/195 (45.13%), Postives = 131/195 (67.18%), Query Frame = 2
Query: 140 DTDKWYYLNSEQFPAHLQSKFLQNSLDEETEEFLENCYEKSDWIFTQIFHNVFRVVLGWFMSMTTVNGLLNRGSMFVFSENQFLELLNVNSSSYHGNSYLDLGAGDGKTTGKLIKYFDQSYATEQSPTMQWRLKEKGFQILEIDQWQ-TPKKYSLITALNLLDRIDHPVKLVNELRTSI-ADDGFVILAIVLPYN 718
+ +WY N E+ LQ+ F+Q+ LD+ T+ FL N EKS W+F Q++H+ V FMS T++NGLL RGSMFVFS +QF LL +N + + LDLGAGDG+ T + +F++ YATE S TM W+L++K +++L I++WQ T +Y +I+ LNLLDR D P+ L+ ++R+ + G VILA+VLP++
Sbjct: 52 ENHQWYVCNREKLCESLQAVFVQSYLDQGTQIFLNNSIEKSGWLFIQLYHSFVSSVFSLFMSRTSINGLLGRGSMFVFSPDQFQRLLKIN-PDWKTHRLLDLGAGDGEVTKIMSPHFEEIYATELSETMIWQLQKKKYRVLGINEWQNTGFQYDVISCLNLLDRCDQPLTLLKDIRSVLEPTRGRVILALVLPFH 245
The following BLAST results are available for this feature:
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