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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007446 ID=TCONS_00007446|Name=TCONS_00007446|organism=Clytia hemisphaerica|type=transcript|length=2012bp
GAGATATATTCCATTCTTTTCTAAAGTTCTCGTTTATATTATATTCTAAT
TTCACATTACTTTGTTCTGTcaactttttatattttctagtaaaaaaaat
aaaagaaaatgatattGCCCATGTTTTTACTACTTTGCGGTCACCATTTA
ATGGGCGTGGTATCGACTGAGTTAAAGGAATACACTTTACAAGAAGTCCG
TGCGAAAATTACACGATATCATTTCCTACTTGGCACGGATGAATCAGTCC
GTATTTTGTTGGAAAGCATATCTTGGTTGTACCGGAATGAGACTGAACTT
GTAGTCGGTATGTACAGTAAAGAATTTACGGATGGTGAGATCCCATGGAA
AGAGCAGAAATATTCAAATAGAGATGCATCAATCGCGTTTTTCAAGCAGA
GAAAAATTGACCGGAAATGTTTGATCCAGGCTGATTTCCGTAAATCGGTA
AAAGCTGAATCGGTGCTTCATAAATCGGTTGATGAGCTAGTAGAGTTTTT
GAACGAGCAATGCTTTTATTTTGTCACTCTTACAGACGTATTGAATCGAG
CGGGAATGGAGCGGAAACGTATTTTAAAGGATTTGTATCACGTCCCGGAT
GCGGATCCAAATGAAAATATAGCGAAATGTGAAAGGATTCAGGTACCGCG
TAACAGTGCAGAGTTTGCTCGTAATTTTTTATTTCGCTCGAAACCAGTCA
TCATTGAAGGCGCAATTGATCATTGGGACGCTTTATCGAAATGGAGCAAC
GATTTTTTACGTGAAAAATACCAAGACAAGAAGGTTCATGTAAAATTAAC
ACCAAATGGTGAGTTCGAGGGATGCGATTTAGCACAGAAATTCGATAATT
ATGACACGTTTTCCATTCCGAAGAACGTGAAGGAACAATTGCCGTACCCC
GATTTAGTCGTCGTACGCCCTGCTGTTGGTAGTATGAAATTTGGTGAATT
TATGGACTTGGTCGAAGGGAAAAATAACCCTAACAATATGTCTGCTTATC
TAGAATATTCATCTATTCGTGAATATTTCCCTGAACTCGAATACGATCTA
GACCAAATGCCATTCGCTCCAGACCTTTTGAAATTATCGCATTTGAACAT
TTGGATCAGTAACGGCCGGACACTTGGTAAACTCCACTTCGACCCTTTCG
ATAATTTCTTATGTCAACTCCGTGGAAATAAACGGTTAACTATTTTCGAG
CCACATCGGAATTACGACTTATATGAAGCTCATATACAGGAAGCTATGCT
GGGATATAATCCAAAATCGAGGAAATTTCGGAATCACGAATTGCTTGATA
GTACGTCAATGGTTATGTCTCCGATTGATATTTTGAATCCCGATTTTGAC
CGCTTTTCAAATTTCACAAGAGCCAAACCAATGGAGTGTCATCTCAATGA
GGGTGATGTTTTATTTTTACCAGCCTTTTGGTGGCATGAAGTTCAGTCTT
ATCCAAACGCAGTTGAACAAAGAAACTTAGCCGTGAACTTTTGGTATAAA
CCCTTCTTAACTAAAGAATTTCCATGCGTTGACTGTAAATTAGACGTGAA
TCATGTTTATAGAGAATTACTTGAAAAATTTGCTACTTGAAATGCGTTTT
TTACCACTTTGGGGATAGCTGGGGATTTAGTCATATTACTTTGGATGAGA
ATTTCGGAAAGACAAATACACACGCTAACAGCACACCGCATATAACAACA
ATCAAGAAACTTTGTTGTTGTCTTGAAAAAGTCCGCGAGGCCGAAATATC
TATGTaagagatgttttttttttttacagtcttagatttatttattttaa
tggGGAGTTTATTCTCTGTTATATAATTTAACATATTTATTGGGCTTTTT
CGAAGGCTTCAGGTTATCTAAAAATAGTATTCTAGGcatttaaaggtttt
taagAAGTCTAAATTTGAGGTTTTAGGGTTGTACAATAACCTTTCATAAA
ACCCTGGATTTATCTATATCCGCCATCTCTGATAagacttttttcgaaat
ttattttctcat Run BLAST on NCBI transcript from alignment at sc0000077:112282..114293+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007446 ID=TCONS_00007446|Name=TCONS_00007446|organism=Clytia hemisphaerica|type=transcript|length=2012bp|location=Sequence derived from alignment at sc0000077:112282..114293+ (Clytia hemisphaerica)
GAGATATATTCCATTCTTTTCTAAAGTTCTCGTTTATATTATATTCTAAT
TTCACATTACTTTGTTCTGTcaactttttatattttctagtaaaaaaaat
aaaagaaaatgatattGCCCATGTTTTTACTACTTTGCGGTCACCATTTA
ATGGGCGTGGTATCGACTGAGTTAAAGGAATACACTTTACAAGAAGTCCG
TGCGAAAATTACACGATATCATTTCCTACTTGGCACGGATGAATCAGTCC
GTATTTTGTTGGAAAGCATATCTTGGTTGTACCGGAATGAGACTGAACTT
GTAGTCGGTATGTACAGTAAAGAATTTACGGATGGTGAGATCCCATGGAA
AGAGCAGAAATATTCAAATAGAGATGCATCAATCGCGTTTTTCAAGCAGA
GAAAAATTGACCGGAAATGTTTGATCCAGGCTGATTTCCGTAAATCGGTA
AAAGCTGAATCGGTGCTTCATAAATCGGTTGATGAGCTAGTAGAGTTTTT
GAACGAGCAATGCTTTTATTTTGTCACTCTTACAGACGTATTGAATCGAG
CGGGAATGGAGCGGAAACGTATTTTAAAGGATTTGTATCACGTCCCGGAT
GCGGATCCAAATGAAAATATAGCGAAATGTGAAAGGATTCAGGTACCGCG
TAACAGTGCAGAGTTTGCTCGTAATTTTTTATTTCGCTCGAAACCAGTCA
TCATTGAAGGCGCAATTGATCATTGGGACGCTTTATCGAAATGGAGCAAC
GATTTTTTACGTGAAAAATACCAAGACAAGAAGGTTCATGTAAAATTAAC
ACCAAATGGTGAGTTCGAGGGATGCGATTTAGCACAGAAATTCGATAATT
ATGACACGTTTTCCATTCCGAAGAACGTGAAGGAACAATTGCCGTACCCC
GATTTAGTCGTCGTACGCCCTGCTGTTGGTAGTATGAAATTTGGTGAATT
TATGGACTTGGTCGAAGGGAAAAATAACCCTAACAATATGTCTGCTTATC
TAGAATATTCATCTATTCGTGAATATTTCCCTGAACTCGAATACGATCTA
GACCAAATGCCATTCGCTCCAGACCTTTTGAAATTATCGCATTTGAACAT
TTGGATCAGTAACGGCCGGACACTTGGTAAACTCCACTTCGACCCTTTCG
ATAATTTCTTATGTCAACTCCGTGGAAATAAACGGTTAACTATTTTCGAG
CCACATCGGAATTACGACTTATATGAAGCTCATATACAGGAAGCTATGCT
GGGATATAATCCAAAATCGAGGAAATTTCGGAATCACGAATTGCTTGATA
GTACGTCAATGGTTATGTCTCCGATTGATATTTTGAATCCCGATTTTGAC
CGCTTTTCAAATTTCACAAGAGCCAAACCAATGGAGTGTCATCTCAATGA
GGGTGATGTTTTATTTTTACCAGCCTTTTGGTGGCATGAAGTTCAGTCTT
ATCCAAACGCAGTTGAACAAAGAAACTTAGCCGTGAACTTTTGGTATAAA
CCCTTCTTAACTAAAGAATTTCCATGCGTTGACTGTAAATTAGACGTGAA
TCATGTTTATAGAGAATTACTTGAAAAATTTGCTACTTGAAATGCGTTTT
TTACCACTTTGGGGATAGCTGGGGATTTAGTCATATTACTTTGGATGAGA
ATTTCGGAAAGACAAATACACACGCTAACAGCACACCGCATATAACAACA
ATCAAGAAACTTTGTTGTTGTCTTGAAAAAGTCCGCGAGGCCGAAATATC
TATGTaagagatgttttttttttttacagtcttagatttatttattttaa
tggGGAGTTTATTCTCTGTTATATAATTTAACATATTTATTGGGCTTTTT
CGAAGGCTTCAGGTTATCTAAAAATAGTATTCTAGGcatttaaaggtttt
taagAAGTCTAAATTTGAGGTTTTAGGGTTGTACAATAACCTTTCATAAA
ACCCTGGATTTATCTATATCCGCCATCTCTGATAagacttttttcgaaat
ttattttctcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007446-exon-sc0000077-1491911889:112282..114293 | TCONS_00007446-exon-sc0000077-1491911889:112282..114293 | Clytia hemisphaerica | exon |
| TCONS_00007446-exon-sc0000077-1510915933:112282..114293 | TCONS_00007446-exon-sc0000077-1510915933:112282..114293 | Clytia hemisphaerica | exon |
| TCONS_00007446-exon-sc0000077-1575043694:112282..114293 | TCONS_00007446-exon-sc0000077-1575043694:112282..114293 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000077 | supercontig | sc0000077:112282..114293 + |
Blast
BLAST of TCONS_00007446 vs. Swiss-Prot (Human)
Match: JMJD7 (JmjC domain-containing protein 7 OS=Homo sapiens GN=JMJD7 PE=1 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 1.776e-27 Identity = 80/317 (25.24%), Postives = 140/317 (44.16%), Query Frame = 1
Query: 646 PRNSAEFARNFLFRSKPVIIEGAIDHWDALSKWSNDFLREKYQDKKVHVKLTPNGEFEGCDLAQKFDNYDTFSIPKNVKEQLPYPDLVVVRPAVGSMKFGEFMDLVEGK-NNPNNMSAYLEYSSIREYFPELEYDLD-QMPFAPDLLK--LSHLNIWISNGRTLGKLHFDPFDNFLCQLRGNKRLTIFEPH-RNYDLYEAHIQEAMLGYNPKSRKFRNHELLDSTSMVMSPIDILNPDFDRFSNFTRAKPMECHLNEGDVLFLPAFWWHEVQSYPNAVEQRNLAVNFWYKPFLTKEFPCVDCKLDVNHVYRELLEKF 1581
P F R+++ ++P II A+ HW AL KWS + R +V V +TP+G + D F +P + L + +D++EG+ +P + + S++ P+L DL+ +P+A + L +N W+ + LH D ++N C + G K P R + YE + + K + E ++ + P+D L PD R+ ++++A+ + C + G++L+LPA W+H VQ Q +AVNFWY D + D+ + Y +LL+
Sbjct: 35 PPTPLHFYRDWVCPNRPCIIRNALQHWPALQKWSLPYFRATVGSTEVSVAVTPDGYADAV-------RGDRFMMPAERRLPLSF-----------------VLDVLEGRAQHPGVLYVQKQCSNLPSELPQLLPDLESHVPWASEALGKMPDAVNFWLGEAAAVTSLHKDHYENLYCVVSGEKHFLFHPPSDRPFIPYELYTPATYQLTEEGTFKVVDEEAMEKVPWI--PLDPLAPDLARYPSYSQAQALRCTVRAGEMLYLPALWFHHVQQ-----SQGCIAVNFWY-----------DMEYDLKYSYFQLLDSL 309
The following BLAST results are available for this feature:
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