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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007440 ID=TCONS_00007440|Name=TCONS_00007440|organism=Clytia hemisphaerica|type=transcript|length=1123bp
CGACTAACGCGCTTTGTTGTCACATGACATAGATCTCGAAATTTTGCGAT
attactttttttcttaaagTCCGGTGTTTATATCCAACAAGGCTTTTCCA
TTCCAATCAGTAATTTAGCTACTTAATTTTATCCCCTTTGGCTAGAAAGC
TCTCATCGGTTCACTGAGACAGGGTAACGGGGTTGTAAAtgtatcatttt
tcatttatagttttCGGTAAGCGATTGAGAAGGACGTACCGGAAATTTAA
ATATGGAACACCAGATGGTGGATATAAGATGTTGCCAGACCATATCAAAG
aaaaaagctTCTATGATATGAGGGGAAAAGTAgaatttcaaaatgatttt
attCGCATGATGGAAAGAATTGAAGAATCGAAGCGAAGACTATTTACAAG
TAAGAAGATTGGAACTCAACTTGATGTACCAAAGGATATCTTTGACCGTC
TCGGAAGTGAATTTCCTTCTTACAAAGTAATCGAATTGTGCCAAGACTTG
AGGAAGATTGGTGTGAATATCCTCATATTGACTTTGTTTGCTGATGGCAT
TCAGCATTTAGATTAAATTAAATATGGTTTAAAGTATCCATCTGCGCAGA
AAATATCGAAGGTTCAATCGAACGTGATTACAACAATGGTGGCTTATTCG
CACAAATGgtattttgatacaaaagaaaATCGAGGAGAACAATCGTAAAA
ATATAAATCCCTTAATAAAGGAAAAGGAAGAGAATTAACCGTATGgttta
aagtaataaaaacttTACCGCAAGTTCCTGAAATTCTACGTATTACTGAG
TTAAAAACCCTACATGGATGAAATGGGGGAAAGAATGGTATGGCtacgaa
agcagccggcgaggcgacctttttttccaatgtgttctgagagcatattt
cagctagaaattttgatctgttctgatcagatcttcaaaaattaatcagc
tagaaatatagatgtgttctgacgagacaggggtagaatcaaggtcatct
aacgtgttcttgttgtctaggtaaccctagagtaaccctagaaagcttct
gAGCACATCCTTTTAAGGAGACAGGAATATAATCAAGAGCAAATTGAggt
aatcttgttgcctagtaaccaaN Run BLAST on NCBI protein sequence of TCONS_00007440-protein >TCONS_00007440-protein ID=TCONS_00007440-protein|Name=TCONS_00007440-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
MYHFSFIVFGKRLRRTYRKFKYGTPDGGYKMLPDHIKEKSFYDMRGKVEF
QNDFIRMMERIEESKRRLFTSKKIGTQLDVPKDIFDRLGSEFPSYKVIEL
CQDLRKIGVNILILTLFADGIQHLD Run BLAST on NCBI transcript from alignment at sc0000077:13548..16140+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007440 ID=TCONS_00007440|Name=TCONS_00007440|organism=Clytia hemisphaerica|type=transcript|length=2593bp|location=Sequence derived from alignment at sc0000077:13548..16140+ (Clytia hemisphaerica)
CGACTAACGCGCTTTGTTGTCACATGACATAGATCTCGAAATTTTGCGAT
attactttttttcttaaagTCCGGTGTTTATATCCAACAAGGCTTTTCCA
TTCCAATCAGTAATTTAGCTACTTAATTTTATCCCCTTTGGCTAGAAAGC
TCTCATCGGTTCACTGAGACAGGGTAACGGGGTTGTAAAtgtatcatttt
tcatttatagttttCGGTAAGCGATTGAGAAGGACGTACCGGAAATTTAA
ATATGGAACACCAGGTAAACTTTTATATACCTTACTTATACCGAAcaatt
ttacgtttttcttttttttttgtcgaaaatGGCATTACAGTAATTCGTGA
AAATTAATCGAAGCTAAATTTAATGAGTTACAGATCAACGCCAAGTTAGC
ATAGGATAAAGGGCTGACTGGTATCGTTAATGACAATGGTACTTtttaca
ccccttctcacagacccactgggaccccttcccactggaaaaattggcca
aaatatcgtccccagtggaaaattatacttgaaaataatcagataaggaa
atcctcactgcaaaataatgTGTtatatccccactgaattttttggcTAG
AAAATAATGTAATTCAAAtccctaaaaataaaaaacatggtaatatcaat
ccccatcgagttttggtccgttattttacCCCCgctggctgataaaatcc
caccgggtctatgagaagggggtgtctttcTCATTTAAAGCAACAGATTT
TCCTTTCTCCTTTAGTCTTTTTGCACAGATTGAGAACGTTAAGTATTAGA
ACGCGTTCAGATTCATATTCTTGAAATAGCGCTTTTCTTGCTGTCGTACA
TGAAGATCAGTAcgaaaaacaaactttatataattgttacattatTGCCC
CTAAAACTAATCTTTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtaagccaatc
agctttcgggctgacatcagcatgtatttcaaaGTATACCATGGAACTAC
CAGCAActccgacccctactataagtatagcgctattCCCTTTAATACTT
TTAGATGGTGGATATAAGATGTTGCCAGACCATATCAAAGGTAATATTTA
TTCATCAATTTTGCTCTTCACATAAGACATTCGAtttgaaacattaaaaa
tcttttgttcaCTATTATCATCTGGATAATGATTTTTAAATAGACACTTT
AATTTTCAGATCTTTCTTTGACAGTTAGTGTCTTTCTTTTTGCTCGCCTG
ATGACAAAATCTCATTCAGCTTATTTATAAACGTTTGTAAAGCTATAatt
cttttcttccttttttatagaaaaaagctTCTATGATATGAGGGGAAAAG
TAgaatttcaaaatgattttattCGCATGATGGAAAGAATTGAAGAATCG
AAGCGAAGACTATTTACAAGTAAGAAGATTGGAACTCAACTTGATGTACC
AAAGGATATCTTTGACCGTCTCGGAAGTGAATTTCCTTCTTACAAAGTAA
TCGAATTGTGCCAAGACTTGAGGAAGATTGGTGTGAATATCCTCATATTG
ACTTTGTTTGCTGATGGCATTCAGCATTTAGATTAAATTAAATATGGTTT
AAAGTATCCATCTGCGCAGAAAATATCGAAGGTTCAATCGAACGTGATTA
CAACAATGGTGGCTTATTCGCACAAATGgtattttgatacaaaagaaaAT
CGAGGAGAACAATCGTAAAAATATAAATCCCTTAATAAAGGAAAAGGAAG
AGAATTAACCGTATGgtttaaagtaataaaaacttTACCGCAAGTTCCTG
AAATTCTACGTATTACTGAGTTAAAAACCCTACATGGATGAAATGGGGGA
AAGAATGGTATGGCtacgaaagcagccggcgaggcgacctttttttccaa
tgtgttctgagagcatatttcagctagaaattttgatctgttctgatcag
atcttcaaaaattaatcagctagaaatatagatgtgttctgacgagacag
gggtagaatcaaggtcatctaacgtgttcttgttgtctaggtaaccctag
agtaaccctagaaagcttctgAGCACATCCTTTTAAGGAGACAGGAATAT
AATCAAGAGCAAATTGAggtaatcttgttgcctagtaaccaaN Coding sequence (CDS) from alignment at sc0000077:13548..16140+ >TCONS_00007440 ID=TCONS_00007440|Name=TCONS_00007440|organism=Clytia hemisphaerica|type=CDS|length=1134bp|location=Sequence derived from alignment at sc0000077:13548..16140+ (Clytia hemisphaerica)
AtgtatcatttttcatttatagttttCGGTAAGCGATTGAGAAGGACGTA
CCGGAAATTTAAATATGGAACACCAGATGGTGGATATAAGATGTTGCCAG
ACCATATCAAAGaaaaaagctTCTATGATATGAGGGGAAAAGTAgaattt
caaaatgattttattCGCATGATGGAAAGAATTGAAGAATCGAAGCGAAG
ACTATTTACAAGTAAGAAGATTGGAACTCAACTTGATGTACCAAAGGATA
TCTTTGACCGTCTCGGAAGTGAATTTCCTTCTTACAAAGTAATCGAATTG
TGCCAAGACTTGAGGAAGATTGGTGTGAATATCCTCATATTGACTTTGTT
TGCTGATGGCATTCAGCATTTAGATTAAAtgtatcatttttcatttatag
ttttCGGTAAGCGATTGAGAAGGACGTACCGGAAATTTAAATATGGAACA
CCAGATGGTGGATATAAGATGTTGCCAGACCATATCAAAGaaaaaagctT
CTATGATATGAGGGGAAAAGTAgaatttcaaaatgattttattCGCATGA
TGGAAAGAATTGAAGAATCGAAGCGAAGACTATTTACAAGTAAGAAGATT
GGAACTCAACTTGATGTACCAAAGGATATCTTTGACCGTCTCGGAAGTGA
ATTTCCTTCTTACAAAGTAATCGAATTGTGCCAAGACTTGAGGAAGATTG
GTGTGAATATCCTCATATTGACTTTGTTTGCTGATGGCATTCAGCATTTA
GATTAAAtgtatcatttttcatttatagttttCGGTAAGCGATTGAGAAG
GACGTACCGGAAATTTAAATATGGAACACCAGATGGTGGATATAAGATGT
TGCCAGACCATATCAAAGaaaaaagctTCTATGATATGAGGGGAAAAGTA
gaatttcaaaatgattttattCGCATGATGGAAAGAATTGAAGAATCGAA
GCGAAGACTATTTACAAGTAAGAAGATTGGAACTCAACTTGATGTACCAA
AGGATATCTTTGACCGTCTCGGAAGTGAATTTCCTTCTTACAAAGTAATC
GAATTGTGCCAAGACTTGAGGAAGATTGGTGTGAATATCCTCATATTGAC
TTTGTTTGCTGATGGCATTCAGCATTTAGATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007440-exon-sc0000077-1491911889:13548..13811 | TCONS_00007440-exon-sc0000077-1491911889:13548..13811 | Clytia hemisphaerica | exon |
| TCONS_00007440-exon-sc0000077-1510915933:13548..13811 | TCONS_00007440-exon-sc0000077-1510915933:13548..13811 | Clytia hemisphaerica | exon |
| TCONS_00007440-exon-sc0000077-1575043694:13548..13811 | TCONS_00007440-exon-sc0000077-1575043694:13548..13811 | Clytia hemisphaerica | exon |
| TCONS_00007440-exon-sc0000077-1491911889:15052..15087 | TCONS_00007440-exon-sc0000077-1491911889:15052..15087 | Clytia hemisphaerica | exon |
| TCONS_00007440-exon-sc0000077-1510915933:15052..15087 | TCONS_00007440-exon-sc0000077-1510915933:15052..15087 | Clytia hemisphaerica | exon |
| TCONS_00007440-exon-sc0000077-1575043694:15052..15087 | TCONS_00007440-exon-sc0000077-1575043694:15052..15087 | Clytia hemisphaerica | exon |
| TCONS_00007440-exon-sc0000077-1491911889:15318..16140 | TCONS_00007440-exon-sc0000077-1491911889:15318..16140 | Clytia hemisphaerica | exon |
| TCONS_00007440-exon-sc0000077-1510915933:15318..16140 | TCONS_00007440-exon-sc0000077-1510915933:15318..16140 | Clytia hemisphaerica | exon |
| TCONS_00007440-exon-sc0000077-1575043694:15318..16140 | TCONS_00007440-exon-sc0000077-1575043694:15318..16140 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000077 | supercontig | sc0000077:13548..16140 + |
Blast
The following BLAST results are available for this feature:
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