TCONS_00007418 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007418
Unique NameTCONS_00007418
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length488

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007418 ID=TCONS_00007418|Name=TCONS_00007418|organism=Clytia hemisphaerica|type=transcript|length=488bp
CGCAGGATCAACTTGAACTAAAGGAACGATCCTGATTTCACATAAATTCA
TTTTGGTTGAATTCCCTTGctcttttgtaattttgattttagtaaAGGAA
CTTAATCCACCACCTTGCAAACAATTAAGGTTTAAAAATTGAGATGTAGA
TAAAACAGACATAGGGGTTGCACACTGGTGTAAATCTTCTTCCTCGTTGA
TAACGACATGTACTTGAAAAGTAGCCGAGGCAACTATCTTTTGTATTGGT
TCGGTTGATGGAGGTACTGGCCGAGCAAGCGTGATCAGTATATCCACAAG
AACGGGGGTTGCGAATTGAATGACAATGTAAGGAAGCTGAATGGTTTGTG
TTTCCATGCAGGTTTGGAGACTGGAATCAGTCAGTACACTTCTATTACCT
GTTGTTAGGTTTAATGTTCTGTTGATCTGGAATTGAATTGGTGATGTTGC
ACTTGTTGTGGTCGTTTTGGCTGGttgggtggtcgttg
Run BLAST on NCBI

protein sequence of TCONS_00007418-protein

>TCONS_00007418-protein ID=TCONS_00007418-protein|Name=TCONS_00007418-protein|organism=Clytia hemisphaerica|type=polypeptide|length=162bp
TTTQPAKTTTTSATSPIQFQINRTLNLTTGNRSVLTDSSLQTCMETQTIQ
LPYIVIQFATPVLVDILITLARPVPPSTEPIQKIVASATFQVHVVINEEE
DLHQCATPMSVLSTSQFLNLNCLQGGGLSSFTKIKITKEQGNSTKMNLCE
IRIVPLVQVDPA
Run BLAST on NCBI

transcript from alignment at sc0000076:133163..133650

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007418 ID=TCONS_00007418|Name=TCONS_00007418|organism=Clytia hemisphaerica|type=transcript|length=488bp|location=Sequence derived from alignment at sc0000076:133163..133650 (Clytia hemisphaerica)
caacgaccacccaaCCAGCCAAAACGACCACAACAAGTGCAACATCACCA
ATTCAATTCCAGATCAACAGAACATTAAACCTAACAACAGGTAATAGAAG
TGTACTGACTGATTCCAGTCTCCAAACCTGCATGGAAACACAAACCATTC
AGCTTCCTTACATTGTCATTCAATTCGCAACCCCCGTTCTTGTGGATATA
CTGATCACGCTTGCTCGGCCAGTACCTCCATCAACCGAACCAATACAAAA
GATAGTTGCCTCGGCTACTTTTCAAGTACATGTCGTTATCAACGAGGAAG
AAGATTTACACCAGTGTGCAACCCCTATGTCTGTTTTATCTACATCTCAA
TTTTTAAACCTTAATTGTTTGCAAGGTGGTGGATTAAGTTCCTttactaa
aatcaaaattacaaaagagCAAGGGAATTCAACCAAAATGAATTTATGTG
AAATCAGGATCGTTCCTTTAGTTCAAGTTGATCCTGCG

Coding sequence (CDS) from alignment at sc0000076:133163..133650

>TCONS_00007418 ID=TCONS_00007418|Name=TCONS_00007418|organism=Clytia hemisphaerica|type=CDS|length=486bp|location=Sequence derived from alignment at sc0000076:133163..133650 (Clytia hemisphaerica)
acgaccacccaaCCAGCCAAAACGACCACAACAAGTGCAACATCACCAAT
TCAATTCCAGATCAACAGAACATTAAACCTAACAACAGGTAATAGAAGTG
TACTGACTGATTCCAGTCTCCAAACCTGCATGGAAACACAAACCATTCAG
CTTCCTTACATTGTCATTCAATTCGCAACCCCCGTTCTTGTGGATATACT
GATCACGCTTGCTCGGCCAGTACCTCCATCAACCGAACCAATACAAAAGA
TAGTTGCCTCGGCTACTTTTCAAGTACATGTCGTTATCAACGAGGAAGAA
GATTTACACCAGTGTGCAACCCCTATGTCTGTTTTATCTACATCTCAATT
TTTAAACCTTAATTGTTTGCAAGGTGGTGGATTAAGTTCCTttactaaaa
tcaaaattacaaaagagCAAGGGAATTCAACCAAAATGAATTTATGTGAA
ATCAGGATCGTTCCTTTAGTTCAAGTTGATCCTGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004176XLOC_004176Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007418-exon-sc0000076-1491911889:133163..133650TCONS_00007418-exon-sc0000076-1491911889:133163..133650Clytia hemisphaericaexon
TCONS_00007418-exon-sc0000076-1510915933:133163..133650TCONS_00007418-exon-sc0000076-1510915933:133163..133650Clytia hemisphaericaexon
TCONS_00007418-exon-sc0000076-1575043694:133163..133650TCONS_00007418-exon-sc0000076-1575043694:133163..133650Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007418-proteinTCONS_00007418-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000076supercontigsc0000076:133163..133650 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.140859	0	0	0.490454	0.153052	1.07156	1.85821	1.15947	1.77845	0	0	0	0	0	0	0	0	0	0	0	0.132553	0	0	0	0	0	0.143797
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007418 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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