TCONS_00007411 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007411
Unique NameTCONS_00007411
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length531

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007411 ID=TCONS_00007411|Name=TCONS_00007411|organism=Clytia hemisphaerica|type=transcript|length=531bp
CTGAATAATTGCATTTCCAAAGTGAAGTCTGTGTTCTTCTTGTGTAATCC
GAATAACATCTTTCATCTCGGTACCATTTTCATATCTATACTTAATTTCT
TCTCGAAGAACAGAGTTTCCTTTCTCAAGTGATTGTCTTATATTGCCAGA
TATGGATTGCGTCTCAACTGAATTAGGTAACCCATTAATGAGTTTCCCAT
GAAAAGTCACTGTAAAATCTTCTGGAATTTCACTACCACGAAATTCAGGT
CGATCGACACATAATGTTTGATCTTTGGAACATGGGTGAAATATCCCACA
TGAgcacatttgatttttttcgcaTCTGTGATATCTTCCCCACGGATCGT
TGCCGTCGCATTCATAATATCCCGCCAAGTCGTTATCACAGATGTTACCT
TTCCCAAAGAAGCACATTCGTTGTTGAGATTCACCAGAGACATCAGCGAT
GCTACAAAATGTACCAATaatcaaaatcgaaagtagAGACTTCATCTTTT
CGAGTCAAACCTTCTCTTCGTTTCTCCAGTC
Run BLAST on NCBI

transcript from alignment at sc0000076:664068..664657-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007411 ID=TCONS_00007411|Name=TCONS_00007411|organism=Clytia hemisphaerica|type=transcript|length=590bp|location=Sequence derived from alignment at sc0000076:664068..664657- (Clytia hemisphaerica)
CTGAATAATTGCATTTCCAAAGTGAAGTCTGTGTTCTTCTTGTGTAATCC
GAATAACATCTTTCATCTCGGTACCATTTTCATATCTATACTTAATTTCT
TCTCGAAGAACAGAGTTTCCTTTCTCAAGTGATTGTCTTATATTGCCAGA
TATGGATTGCGTCTCAACTGAATTAGGTAACCCATTAATGAGTTTCCCAT
GAAAAGTCACTGTAAAATCTTCTGGAATTTCACTACCACGAAATTCAGGT
CGATCAACACATAATGTTTGATCTTTGGAANTGGAATTTCACTACCACGA
AATTCAGGTCGATCGACACATAATGTTTGATCTTTGGAACATGGGTGAAA
TATCCCACATGAGCACATTTGATTTTTTTCGCATCTGTGATATCTTCCCC
ACGGATCGTTGCCGTCGCATTCATAATATCCCGCCAAGTCGTTATCACAG
ATGTTACCTTTCCCAAAGAAGCACATTCGTTGTTGAGATTCACCAGAGAC
ATCAGCGATGCTACAAAATGTACCAATAATCAAAATCGAAAGTAGAGACT
TCATCTTTTCGAGTCAAACCTTCTCTTCGTTTCTCCAGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004169XLOC_004169Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007411-exon-sc0000076-1575043694:664410..664657TCONS_00007411-exon-sc0000076-1575043694:664410..664657Clytia hemisphaericaexon
TCONS_00007411-exon-sc0000076-1575043694:664068..664350TCONS_00007411-exon-sc0000076-1575043694:664068..664350Clytia hemisphaericaexon
TCONS_00007411-exon-sc0000076-1510915933:664410..664657TCONS_00007411-exon-sc0000076-1510915933:664410..664657Clytia hemisphaericaexon
TCONS_00007411-exon-sc0000076-1510915933:664068..664350TCONS_00007411-exon-sc0000076-1510915933:664068..664350Clytia hemisphaericaexon
TCONS_00007411-exon-sc0000076-1491911889:664410..664657TCONS_00007411-exon-sc0000076-1491911889:664410..664657Clytia hemisphaericaexon
TCONS_00007411-exon-sc0000076-1491911889:664068..664350TCONS_00007411-exon-sc0000076-1491911889:664068..664350Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000076supercontigsc0000076:664068..664657 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.729952	0.519644	0	0.0737392	2.23782	0	0.105283	0.148365	1.47019	1.44158	0.146758	1.2858	0.135741	3.30769	0	0.209479	0.282014	0	0	0	0	0	0.237205	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007411 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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