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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007409 ID=TCONS_00007409|Name=TCONS_00007409|organism=Clytia hemisphaerica|type=transcript|length=2258bpRun BLAST on NCBI transcript from alignment at sc0000076:574098..594645- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007409 ID=TCONS_00007409|Name=TCONS_00007409|organism=Clytia hemisphaerica|type=transcript|length=20548bp|location=Sequence derived from alignment at sc0000076:574098..594645- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00007409 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 93.5893 bits (231), Expect = 2.914e-19 Identity = 53/115 (46.09%), Postives = 69/115 (60.00%), Query Frame = 3
Query: 1083 WSAWSLWSACSQTCDTGTSLRTRLCVDNSLASSNQ-CGGLGXXXXXXXXXXXXAPCAPVNGGWTEWTNWSDCTKPCGTGTQSRWRMCSNPAPDNGGADCDGNASESYDCNTDPCP 1424
+S WS W ACS TC G R+RLC A+ + C G S E+ +CQ PC PV+G W+EW+ W +CT+ CG G Q+R R C+NP+ +GG C+GNA E CN PCP
Sbjct: 4532 FSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQG----SDLEMRNCQNKPC-PVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCP 4641 HSP 2 Score: 90.8929 bits (224), Expect = 1.701e-18 Identity = 51/118 (43.22%), Postives = 68/118 (57.63%), Query Frame = 3
Query: 1074 DAHWSAWSLWSACSQTCDTGTSLRTRLCVDNSLASSNQ-CGGLGXXXXXXXXXXXXAPCAPVNGGWTEWTNWSDCTKPCGTGTQSRWRMCSNPAPDNGGADCDGNASESYDCNTDPCP 1424
D WS WSLW C+++C G RTR C + S+ + C G + EII C I PC PV+G W+ W W C++ CG GTQ+R R+C+NP P GG+ CDG ++ CN CP
Sbjct: 4586 DGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEG----NAVEIIMCNIRPC-PVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCP 4698 HSP 3 Score: 86.6557 bits (213), Expect = 3.651e-17 Identity = 45/115 (39.13%), Postives = 59/115 (51.30%), Query Frame = 3
Query: 1083 WSAWSLWSACSQTCDTGTSLRTRLCVDNSLA-SSNQCGGLGXXXXXXXXXXXXAPCAPVNGGWTEWTNWSDCTKPCGTGTQSRWRMCSNPAPDNGGADCDGNASESYDCNTDPCP 1424
WSAW W CS++C GT R RLC + A + C G Q P++G W W +WS C+ CG G + R R CS+P P GG C+G+ +S CN+DPCP
Sbjct: 4646 WSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERN-----CPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCP 4755 HSP 4 Score: 84.3445 bits (207), Expect = 1.703e-16 Identity = 43/114 (37.72%), Postives = 54/114 (47.37%), Query Frame = 3
Query: 1083 WSAWSLWSACSQTCDTGTSLRTRLCVDNSLASSNQCGGLGXXXXXXXXXXXXAPCAPVNGGWTEWTNWSDCTKPCGTGTQSRWRMCSNPAPDNGGADCDGNASESYDCNTDPCP 1424
W+ W+ WSACS +C G RTR C D Q GG + P +G W+ W+ W C++ C G R+R C NP P NGG C G S+ CNTD CP
Sbjct: 4703 WATWASWSACSVSCGGGARQRTRGCSD----PVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCP 4812 The following BLAST results are available for this feature:
BLAST of TCONS_00007409 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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