TCONS_00007401 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00007401
Unique Name	TCONS_00007401
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1092

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000076:490896..494293-
coding sequence from alignment at sc0000076:490896..494293-

transcript sequence

>TCONS_00007401 ID=TCONS_00007401|Name=TCONS_00007401|organism=Clytia hemisphaerica|type=transcript|length=1092bp
AAAGAAGTTCAGACGAGAAAAAGAAAACTCTATAAAGGGATtccattttc
aggaaaaaacttTTACAACCAAAATGTCCACGGCATTGACAGAAGGAGCT
AAACTCTTCCAAAAGGAAATTCCATACATTACCGAGCTAGAAGGAGATGT
GGAAGGAATGAAGTTCACCATCAAAGGTGAAGGGACTGGAGATGGAACTA
CTGGATTGATCAAAGCCAAATATATTTGCACCACTGGTGATCTTCCCGTA
CCTTGGGCTACCATCTTGAGTAGCTTATCTTACGGTGTCTTCTGTTTCGC
CAAATATCCACGTCACATTGCCGACTTTTTCAAGAGCACACAACCTGACG
GTTATTCACAAGACAGAAtcattagttttgatgacgATGGTCAATATGAC
GTCAAAGCAAAGATCACTTACGAAGATGGAACACTTTATAACAGAGTCGT
GCTTAAAGGCACTGGATTCAAATCGAACGGCAACATTTTGGGGATGAGAG
TTCTTTACCATTCACCACCGCACATCATCTACATCCTTCCTGATCGTAAA
AATGGTGGCATGAAAATCGAATACAATAAGGCTTTCGACGTTATGGGTGG
AGGTCATCAAATGGCACGCCACGCCCAATTCAACAAACCATTAGGAGCCT
GGGAAGAGGATTTCCCAATGTATCATCATCTTTCTGTTTGGACATCTTTC
GGTAAAGATCCAGATGATGATGAAACTGACCATTTAACCATCGTTGAAGT
CATCAAAGCTATCGATTTGGATACTTACCGTTaagactttaaaaaataat
acctGCCCGCGTGTCGAATTCTGAAGActttaagaaaaatgaaatagcag
gtcaaaaattatttcatataAGAATTTTCCATAGATGTTAGGAATTAAAA
CTTGATATTTTGCACTTTTTCATGCTTAAAGATCAGATTATTTatatatt
tgtttattttttcaaaacttttaaggAATGGTAGTGAACTTAGTGGATCA
GGAATAGTTTTTACTCATATGAATTATATTAATATCTAAAtacttaattt
ttcaaaatagaaatttaTTGTACCGGTGACAAAATATTTACC

Run BLAST on NCBI

protein sequence of TCONS_00007401-protein

>TCONS_00007401-protein ID=TCONS_00007401-protein|Name=TCONS_00007401-protein|organism=Clytia hemisphaerica|type=polypeptide|length=260bp
KKFRREKENSIKGFHFQEKTFTTKMSTALTEGAKLFQKEIPYITELEGDV
EGMKFTIKGEGTGDGTTGLIKAKYICTTGDLPVPWATILSSLSYGVFCFA
KYPRHIADFFKSTQPDGYSQDRIISFDDDGQYDVKAKITYEDGTLYNRVV
LKGTGFKSNGNILGMRVLYHSPPHIIYILPDRKNGGMKIEYNKAFDVMGG
GHQMARHAQFNKPLGAWEEDFPMYHHLSVWTSFGKDPDDDETDHLTIVEV
IKAIDLDTYR

Run BLAST on NCBI

transcript from alignment at sc0000076:490896..494293-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00007401 ID=TCONS_00007401|Name=TCONS_00007401|organism=Clytia hemisphaerica|type=transcript|length=3398bp|location=Sequence derived from alignment at sc0000076:490896..494293- (Clytia hemisphaerica)
AAAGAAGTTCAGACGAGAAAAAGAAAACTCTATAAAGGTAAGACGGTATT
AGAATTCAAGGAGATTGTCTTCTTGATGCTTAAACCTTGATTTATCACAA
TTATCGTATAACTTCGAATAAAAGCCCTTGGGCGTTTGTCAAATTATTTG
AATTTCAGGAGGGGCGCTTATTCGAGGGGGGGGGGTTTAAAAGAAGGAGG
GTGTTTATTCGACATAATACGGTAATATTGATTATTTTTATTGTGTGTTG
TCAGTTTGAGTTATGGAGATGAGGCCTCAGGCTCATGAGGCGAAGGGGTT
GTCGTATTTTCATAATTGTTACTTCTCGCTTTTGCTATTACTTTTCTTCT
TTTTTAATTTTTTTGCATATTTTGTCTTAACTTTCCGTTCTCGTTTTTTT
TAAAGGTATTTACTTCTTGCTTCTGCTATTACATTTCTTTTTTATTACAT
TTTTGTATAATGCGATACTTTCCATTCTCGTTTTTAAGGGATTCCATTTT
CAGGAAAAAACTTTTACAACCAAAATGTCCACGGCATTGACAGAAGGAGC
TAAACTCTTCCAAAAGGAAATTCCATACATTACCGAGCTAGAAGGAGATG
TGGAAGGAATGAAGTTCACCATCAAAGGTGAAGGGACTGGAGATGGAACT
ACTGGATTGATCAAAGCCAAATATATTTGCACCACTGGTGATCTTCCCGT
ACCTTGGGCTACCATCTTGAGTAGCTTATCTTACGGTGTCTTGTAAGTAT
AGCAACAGATATATAGAGCCCGAGCAGCACTGAAAAGTGTGCCGTTATCG
GTAGGAAATCCCATTGAGGTATTACAATAGAATTTCAGTGCGCGACCAAT
AAGAAGCTTCGTGAGTTTTCAAAATAATGGCAACAATATTTTTTGCGATA
TTCAATTTTTTTTGCTTGGAAGAGCTTAAAGTACGCCATCTAGACCTTAG
GGCTTTACAGAAATCTGTGAGTATAGCTCCATGTAATTTGAGACTCCCTA
ATCAAAAGCACAATATTCGAGACGTTTTTAATCATTTTGGTCGAAGTATA
GATTCGCCCGATCAAAATTCGCCAAATCTTTCTGTGAAAATCCATCTGTA
ATATGCCCTTTTCCTGTTGGATAAAACTGCTGATATTTTTCTCATAGCTG
TTTCGCCAAATATCCACGTCACATTGCCGACTTTTTCAAGAGCACACAAC
CTGACGGTTATTCACAAGACAGAATCATTAGTTTTGATGACGATGGTCAA
TATGACGTCAAAGCAAAGATCACTTACGAAGATGGAACACTTTATAACAG
AGTCGTGCTTAAAGGTTTGATTTCCATTTGTCTTAAAAATTATCTACCGT
ATTAGACGTATTCTCGTCATAGTGAAGTATAAAAAAATGCTTTTCTGCCT
AAAAATTCTACATAATTCACCAAAATATCAATAATATGTGCTGATCTTCT
GTGTAGAAACGATTTTCTGTCTCAAACAAAGGACCTTGCTTTGACCACTG
GATAGTGGATAGTCTTAGTGAAGTATATAAAGATACTTTTCTGTCTCAAA
ATTCTATAGATAGTTAACGAAAATTTCAAGAATATGTGCTGGTTTGTTGT
CTAAAATCCATTTTCCGTCTCAGAAGAAAAACCTTGTTTTAACCACTGTC
GATTAGACACTTTTTACCTGCTGGCATACTTTTCTACCTCAAAGTTCTAG
ATAATTCACCAAAATTTCAATAGTATGTGCTGATCTTCTGTGTGAAAACC
ATTTTCTGTCTCAGAAGAAAAACCTTGCTTTGACCACTGGATTCTCGTCT
TAGTGGAGTATATAAAGATACTTTTCTGTCTCAAAATTCTATAGATAGTT
AACGAAAATTTCAAGAATATGTGCTGGTTTGTTGTCTAAAATCCATTTTC
TGTCTCTGAAAAACCTTGCTTTAACCATTGTCAATTAGACACTTATTACC
AGCTGTGATCCTTTTCTTAAAAACGATTCAAATTCATTTTACTGTAAAGG
CACTGGATTCAAATCGAACGGCAACATTTTGGGGATGAGAGTTCTTTACC
ATTCACCACCGCACATCATCTACATCCTTCCTGATCGTAAAAATGGTGGC
ATGAAAATCGAATACAATAAGGTAAGGTCTTGCTCTTATCAATAATGTTT
TTAATTATAGTTTTTAATACTTCTTACCCCCACTGCCCCCATAAGAGGTG
AAAGACTTAATTTCGAAAATTTTGCTTCTTTTTGACTTTTTTACGACCTT
TTGAGGTTTTTTTTCTAGTCAAAATTTTCAACTTTGGTAGAAATTACGAA
TTGACAAAACTTTTATACCCTGTCATACTTTTTTTTGGCGCACCCAGTAG
AATACAAGACGATTTTTAGTGGAAGATCTTATTGTCACATTTTCAAATCA
AGGCTCACCACCAGCCTAAGCCAGCTGCACATTTTTTATAAGAACAATAT
ATATAAGAATATATGACTTTGATAGCCAAAATATCAAGAACAAGTTAAGA
ACATTTCTAAAAGCCTTAGAGGACTTTAAAACATCCGATTTCTTATGAAA
ATAGACAAGAATACTCAAAAACGGTGAATATAAGAACATTTTAATAAAAT
TTTAGATTAAAAACTCCAAATGTTGAGGACATCAGCCGATAACCGAATGT
CGTTCATACCGGGTTCCTTAAGTGACGCAAAAAAATTTCCTTCCCATCCT
CCACTCTGAGCTTCTATTCTTTGACACTTTCTTTGTATTGCTAAGTTTTG
AAAGTTTTTGATGCATTTCCCGAAATATCGAAACTTTTGCCGCTGATGGG
ATTCCAACAGAAAACTTCAAAATTGTTTGATGTCCTTATTTTAAAAACGT
ATAAATAACCTTGTATCTTAATTATTTTTTACACAGGCTTTCGACGTTAT
GGGTGGAGGTCATCAAATGGCACGCCACGCCCAATTCAACAAACCATTAG
GAGCCTGGGAAGAGGATTTCCCAATGTATCATCATCTTTCTGTTTGGACA
TCTTTCGGTAAAGATCCAGATGATGATGAAACTGACCATTTAACCATCGT
TGAAGTCATCAAAGCTATCGATTTGGATACTTACCGTTAAGACTTTAAAA
AATAATACCTGCCCGCGTGTCGAATTCTGAAGACTTTAAGAAAAATGAAA
TAGCAGGTCAAAAATTATTTCATATAAGAATTTTCCATAGATGTTAGGAA
TTAAAACTTGATATTTTGCACTTTTTCATGCTTAAAGATCAGATTATTTA
TATATTTGTTTATTTTTTCAAAACTTTTAAGGAATGGTAGTGAACTTAGT
GGATCAGGAATAGTTTTTACTCATATGAATTATATTAATATCTAAATACT
TAATTTTTCAAAATAGAAATTTATTGTACCGGTGACAAAATATTTACC

Coding sequence (CDS) from alignment at sc0000076:490896..494293-

>TCONS_00007401 ID=TCONS_00007401|Name=TCONS_00007401|organism=Clytia hemisphaerica|type=CDS|length=3915bp|location=Sequence derived from alignment at sc0000076:490896..494293- (Clytia hemisphaerica)
GCTTTCGACGTTATGGGTGGAGGTCATCAAATGGCACGCCACGCCCAATT
CAACAAACCATTAGGAGCCTGGGAAGAGGATTTCCCAATGTATCATCATC
TTTCTGTTTGGACATCTTTCGGTAAAGATCCAGATGATGATGAAACTGAC
CATTTAACCATCGTTGAAGTCATCAAAGCTATCGATTTGGATACTTACCG
TTAAGCACTGGATTCAAATCGAACGGCAACATTTTGGGGATGAGAGTTCT
TTACCATTCACCACCGCACATCATCTACATCCTTCCTGATCGTAAAAATG
GTGGCATGAAAATCGAATACAATAAGCTGTTTCGCCAAATATCCACGTCA
CATTGCCGACTTTTTCAAGAGCACACAACCTGACGGTTATTCACAAGACA
GAATCATTAGTTTTGATGACGATGGTCAATATGACGTCAAAGCAAAGATC
ACTTACGAAGATGGAACACTTTATAACAGAGTCGTGCTTAAAGGGATTCC
ATTTTCAGGAAAAAACTTTTACAACCAAAATGTCCACGGCATTGACAGAA
GGAGCTAAACTCTTCCAAAAGGAAATTCCATACATTACCGAGCTAGAAGG
AGATGTGGAAGGAATGAAGTTCACCATCAAAGGTGAAGGGACTGGAGATG
GAACTACTGGATTGATCAAAGCCAAATATATTTGCACCACTGGTGATCTT
CCCGTACCTTGGGCTACCATCTTGAGTAGCTTATCTTACGGTGTCTTAAG
AAGTTCAGACGAGAAAAAGAAAACTCTATAAAGGCTTTCGACGTTATGGG
TGGAGGTCATCAAATGGCACGCCACGCCCAATTCAACAAACCATTAGGAG
CCTGGGAAGAGGATTTCCCAATGTATCATCATCTTTCTGTTTGGACATCT
TTCGGTAAAGATCCAGATGATGATGAAACTGACCATTTAACCATCGTTGA
AGTCATCAAAGCTATCGATTTGGATACTTACCGTTAAGCACTGGATTCAA
ATCGAACGGCAACATTTTGGGGATGAGAGTTCTTTACCATTCACCACCGC
ACATCATCTACATCCTTCCTGATCGTAAAAATGGTGGCATGAAAATCGAA
TACAATAAGCTGTTTCGCCAAATATCCACGTCACATTGCCGACTTTTTCA
AGAGCACACAACCTGACGGTTATTCACAAGACAGAATCATTAGTTTTGAT
GACGATGGTCAATATGACGTCAAAGCAAAGATCACTTACGAAGATGGAAC
ACTTTATAACAGAGTCGTGCTTAAAGGGATTCCATTTTCAGGAAAAAACT
TTTACAACCAAAATGTCCACGGCATTGACAGAAGGAGCTAAACTCTTCCA
AAAGGAAATTCCATACATTACCGAGCTAGAAGGAGATGTGGAAGGAATGA
AGTTCACCATCAAAGGTGAAGGGACTGGAGATGGAACTACTGGATTGATC
AAAGCCAAATATATTTGCACCACTGGTGATCTTCCCGTACCTTGGGCTAC
CATCTTGAGTAGCTTATCTTACGGTGTCTTAAGAAGTTCAGACGAGAAAA
AGAAAACTCTATAAAGGCTTTCGACGTTATGGGTGGAGGTCATCAAATGG
CACGCCACGCCCAATTCAACAAACCATTAGGAGCCTGGGAAGAGGATTTC
CCAATGTATCATCATCTTTCTGTTTGGACATCTTTCGGTAAAGATCCAGA
TGATGATGAAACTGACCATTTAACCATCGTTGAAGTCATCAAAGCTATCG
ATTTGGATACTTACCGTTAAGCACTGGATTCAAATCGAACGGCAACATTT
TGGGGATGAGAGTTCTTTACCATTCACCACCGCACATCATCTACATCCTT
CCTGATCGTAAAAATGGTGGCATGAAAATCGAATACAATAAGCTGTTTCG
CCAAATATCCACGTCACATTGCCGACTTTTTCAAGAGCACACAACCTGAC
GGTTATTCACAAGACAGAATCATTAGTTTTGATGACGATGGTCAATATGA
CGTCAAAGCAAAGATCACTTACGAAGATGGAACACTTTATAACAGAGTCG
TGCTTAAAGGGATTCCATTTTCAGGAAAAAACTTTTACAACCAAAATGTC
CACGGCATTGACAGAAGGAGCTAAACTCTTCCAAAAGGAAATTCCATACA
TTACCGAGCTAGAAGGAGATGTGGAAGGAATGAAGTTCACCATCAAAGGT
GAAGGGACTGGAGATGGAACTACTGGATTGATCAAAGCCAAATATATTTG
CACCACTGGTGATCTTCCCGTACCTTGGGCTACCATCTTGAGTAGCTTAT
CTTACGGTGTCTTAAGAAGTTCAGACGAGAAAAAGAAAACTCTATAAAGG
CTTTCGACGTTATGGGTGGAGGTCATCAAATGGCACGCCACGCCCAATTC
AACAAACCATTAGGAGCCTGGGAAGAGGATTTCCCAATGTATCATCATCT
TTCTGTTTGGACATCTTTCGGTAAAGATCCAGATGATGATGAAACTGACC
ATTTAACCATCGTTGAAGTCATCAAAGCTATCGATTTGGATACTTACCGT
TAAGCACTGGATTCAAATCGAACGGCAACATTTTGGGGATGAGAGTTCTT
TACCATTCACCACCGCACATCATCTACATCCTTCCTGATCGTAAAAATGG
TGGCATGAAAATCGAATACAATAAGCTGTTTCGCCAAATATCCACGTCAC
ATTGCCGACTTTTTCAAGAGCACACAACCTGACGGTTATTCACAAGACAG
AATCATTAGTTTTGATGACGATGGTCAATATGACGTCAAAGCAAAGATCA
CTTACGAAGATGGAACACTTTATAACAGAGTCGTGCTTAAAGGGATTCCA
TTTTCAGGAAAAAACTTTTACAACCAAAATGTCCACGGCATTGACAGAAG
GAGCTAAACTCTTCCAAAAGGAAATTCCATACATTACCGAGCTAGAAGGA
GATGTGGAAGGAATGAAGTTCACCATCAAAGGTGAAGGGACTGGAGATGG
AACTACTGGATTGATCAAAGCCAAATATATTTGCACCACTGGTGATCTTC
CCGTACCTTGGGCTACCATCTTGAGTAGCTTATCTTACGGTGTCTTAAGA
AGTTCAGACGAGAAAAAGAAAACTCTATAAAGGCTTTCGACGTTATGGGT
GGAGGTCATCAAATGGCACGCCACGCCCAATTCAACAAACCATTAGGAGC
CTGGGAAGAGGATTTCCCAATGTATCATCATCTTTCTGTTTGGACATCTT
TCGGTAAAGATCCAGATGATGATGAAACTGACCATTTAACCATCGTTGAA
GTCATCAAAGCTATCGATTTGGATACTTACCGTTAAGCACTGGATTCAAA
TCGAACGGCAACATTTTGGGGATGAGAGTTCTTTACCATTCACCACCGCA
CATCATCTACATCCTTCCTGATCGTAAAAATGGTGGCATGAAAATCGAAT
ACAATAAGCTGTTTCGCCAAATATCCACGTCACATTGCCGACTTTTTCAA
GAGCACACAACCTGACGGTTATTCACAAGACAGAATCATTAGTTTTGATG
ACGATGGTCAATATGACGTCAAAGCAAAGATCACTTACGAAGATGGAACA
CTTTATAACAGAGTCGTGCTTAAAGGGATTCCATTTTCAGGAAAAAACTT
TTACAACCAAAATGTCCACGGCATTGACAGAAGGAGCTAAACTCTTCCAA
AAGGAAATTCCATACATTACCGAGCTAGAAGGAGATGTGGAAGGAATGAA
GTTCACCATCAAAGGTGAAGGGACTGGAGATGGAACTACTGGATTGATCA
AAGCCAAATATATTTGCACCACTGGTGATCTTCCCGTACCTTGGGCTACC
ATCTTGAGTAGCTTATCTTACGGTGTCTTAAGAAGTTCAGACGAGAAAAA
GAAAACTCTATAAAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_004165	XLOC_004165	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00007401-protein	TCONS_00007401-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000076	supercontig	sc0000076:490896..494293 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
188.433	180.594	324.717	319.221	0.363023	0.271279	0.696205	1.51735	1.32915	0.816797	0.845695	1.88436	0.223717	0.868949	1.19946	0.750695	83.1793	85.2039	0	0.0446938	287.034	186.366	56.963	61.2322	20.0203	40.7901	2.83951	2.37014	18.513	23.3405

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR000786	Green_fluorescent_prot
IPR011584	GFP-related
IPR009017	GFP

Vocabulary: **Biological Process**
Term	Definition
GO:0006091	generation of precursor metabolites and energy
GO:0008218	bioluminescence

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008218	bioluminescence
biological_process	GO:0006091	generation of precursor metabolites and energy

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00007401 vs. Swiss-Prot (Human)

BLAST of TCONS_00007401 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00007401 (transcript) - C. hemisphaerica