TCONS_00007397 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007397
Unique NameTCONS_00007397
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1238

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007397 ID=TCONS_00007397|Name=TCONS_00007397|organism=Clytia hemisphaerica|type=transcript|length=1238bp
CAATGACGGGCCAGCCCAGCCTACCCACAGTCCCGGCCACGGAGGAGGTC
ACTGAGGACACACCCCGCAATGACGGGAAGCCAGCCCAGCCCTCCCACAG
AACCTGTGGTGGAGGAGGTCTCTGAGGACACGCCCCGCGCCCACGGGGAG
CCAGCCCAGCGTACCCACAGACCCGGCCACGGAGGAGGTCACTGAGGACA
CACCCCGCAATGACGGGAAGCCAGCCCAGCCCTCCCACAGAACCTGTGGT
GGAGGAGGTCTCTGAGGACACACCCCGCGCCCACGGGGAGCCAGCCCAGC
GTACCCACAGACCCGGCCACGGAGGAGGTCACTGAGGACACACCCCGCAA
TGACGGGCCCTTTATTGAAAGGGAAAACGGAATGATTTGGATCCCCAAAG
CTGCATAATGCTAACAATTCTAGCCATTGGTAACTTCGTAAAACGTGTTA
TTAGTAGTGCCTCCTTTACAGAAACTCCAAGCAGGATCTTTTTACTAGCC
AATTATGGTGCCAAAAGTGATTTCCTGATAACTTCAAAAGTCTTGCCTTC
TTCCCAAGATTTGACCAGCTATCTGTACATCTGATGCTCTACTTGTGATA
AGGACTCGATAAAAAACATACACACCCTAGGAATAATACAGTAACTAACA
AAAAGAACATATaatagaaaattaaatattattttataaactatttagat
attataccTAAATATATCGCAGACGATATGAAATACTTAATATGCATTTT
AACTTGCCTCTGGTCTGCAACATGAGGCGTCCATACAGCCTTGTTGACAG
GCTATGTAAACCATCCAATCAATGCCGATTGTTTATTATGTACTGATCAC
GATCTTTCTTTATGCTTCTATCTAAAACCGGATCATTCTCAACTTGCCGC
TCACTGCAACTAGGATACATAGCCTTCTCCAAATTAACCTTTGTCAGTCG
ACTGACAGAGAACTTCCGTAGTTGAGTAATACAATATCTAAATTAATATA
AATGCCGTAGAAACCCACTCTAATTTGACGTGCACTGTCTGTGTACAACC
TTGCCTAGGTTGACACCAGCCTTCAAGCCAAGAAGATCACTCTGctgtaa
aaatttttcaattaaccGGGTCGCAGATGTTTGGTAacgtgaaataaaat
aaaatattccgGTTTTGTGTTTGATTATTACATCGAGTTGAGGATAagtt
tatgcttataaaaagttgaaaaatttgtttGTAAACTA
Run BLAST on NCBI

transcript from alignment at sc0000076:105217..107360-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007397 ID=TCONS_00007397|Name=TCONS_00007397|organism=Clytia hemisphaerica|type=transcript|length=2144bp|location=Sequence derived from alignment at sc0000076:105217..107360- (Clytia hemisphaerica)
CAATGACGGGCCAGCCCAGCCTACCCACAGTCCCGGCCACGGAGGAGGTC
AAGGACACACCCCGCAATGACGGGCCCTTTATTGAAAGGGAAAACGGAAT
AATTTGGATCCCCAAAGCTGCATAATGCTATCAATTCTAGCCATTGGTAA
CCTCGAAAAAAACTTGTTATTGGTCGTACCTCCTTTACCGTCAACTCTAT
CCGGGCCCTTTCTACTACTTGTTAGCCAGTTGTGGGGTGCCAAAAATAAT
TCCTTGATAACTTGAGAATTCTTGCCTTCGTCTAAGTCTTGACCAGCTAT
CTGTACAGCTGATGCTCTACTTGTGATAATGACTCGATAAAAACATACAC
ACCCTAGGAACCATATAGGAACAAAAAGAACATATAATAGAAAATAAAAT
ATTATCTTATAAATTAATTTGATTTTATACTTAAATCTATCGAAAACGAT
ATGAAATACTTAAACTTATATATAAAATTGACGTGAATCAAGAAATCATT
CTTGCGTCATGATTTATTACTGTTTAACTAGGCCCATACCCCTCTCTAGG
GAAACAATATATGTAAACTNNNNNNNNNNATTTTATACTTAAATCTATCG
AAAACGATATGAAATACTTAAACTTATATATAAAATTGACGTGAATCAAG
AAATCATTCTTCCGTCATGATTTATTACTGTTTAACTAGGCCCATACCCC
TCTCTAAGGAAACAATATATGTAAACTTGCCTTTTGCCATTAAACTAATA
CCCATAAATAAGGAGAGGGCTTGGATACCTGCAAGGGGAAGCAACCATCA
TGGAGGACCCAGACACTGTGAGAAAGATGTCACGTATAGCGCCCTAACCC
CAGTGTCCCCGCCCTACCACGGACCNAGAGGAGGTCTCTGAGGACACACC
CCGCAATGACGGGAAGCCAGCCCTGCCTAACCCCAGACCCGGCCACGGAG
GAGGTCACTGAGGACACACCCCGCAATGACGGGAAGCCAGCCCAGCCCTC
CCACAGAACCTGTGGTGGAGGAGGTCTCTGAGGACACGCCCCGCGCCCAC
GGGGAGCCAGCCCAGCGTACCCACAGACCCGGCCACGGAGGAGGTCACTG
AGGACACACCCCGCAATGACGGGAAGCCAGCCCAGCCCTCCCACAGAACC
TGTGGTGGAGGAGGTCTCTGAGGACACACCCCGCGCCCACGGGGAGCCAG
CCCAGCGTACCCACAGACCCGGCCACGGAGGAGGTCACTGAGGACACACC
CCGCAATGACGGGCCCTTTATTGAAAGGGAAAACGGAATGATTTGGATCC
CCAAAGCTGCATAATGCTAACAATTCTAGCCATTGGTAACTTCGTAAAAC
GTGTTATTAGTAGTGCCTCCTTTACAGAAACTCCAAGCAGGATCTTTTTA
CTAGCCAATTATGGTGCCAAAAGTGATTTCCTGATAACTTCAAAAGTCTT
GCCTTCTTCCCAAGATTTGACCAGCTATCTGTACATCTGATGCTCTACTT
GTGATAAGGACTCGATAAAAAACATACACACCCTAGGAATAATACAGTAA
CTAACAAAAAGAACATATAATAGAAAATTAAATATTATTTTATAAACTAT
TTAGATATTATACCTAAATATATCGCAGACGATATGAAATACTTAATATG
CATTTTAACTTGCCTCTGGTCTGCAACATGAGGCGTCCATACAGCCTTGT
TGACAGGCTATGTAAACCATCCAATCAATGCCGATTGTTTATTATGTACT
GATCACGATCTTTCTTTATGCTTCTATCTAAAACCGGATCATTCTCAACT
TGCCGCTCACTGCAACTAGGATACATAGCCTTCTCCAAATTAACCTTTGT
CAGTCGACTGACAGAGAACTTCCGTAGTTGAGTAATACAATATCTAAATT
AATATAAATGCCGTAGAAACCCACTCTAATTTGACGTGCACTGTCTGTGT
ACAACCTTGCCTAGGTTGACACCAGCCTTCAAGCCAAGAAGATCACTCTG
CTGTAAAAATTTTTCAATTAACCGGGTCGCAGATGTTTGGTAACGTGAAA
TAAAATAAAATATTCCGGTTTTGTGTTTGATTATTACATCGAGTTGAGGA
TAAGTTTATGCTTATAAAAAGTTGAAAAATTTGTTTGTAAACTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004162XLOC_004162Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007397-exon-sc0000076-1575043694:107314..107360TCONS_00007397-exon-sc0000076-1575043694:107314..107360Clytia hemisphaericaexon
TCONS_00007397-exon-sc0000076-1575043694:105217..106407TCONS_00007397-exon-sc0000076-1575043694:105217..106407Clytia hemisphaericaexon
TCONS_00007397-exon-sc0000076-1510915933:107314..107360TCONS_00007397-exon-sc0000076-1510915933:107314..107360Clytia hemisphaericaexon
TCONS_00007397-exon-sc0000076-1510915933:105217..106407TCONS_00007397-exon-sc0000076-1510915933:105217..106407Clytia hemisphaericaexon
TCONS_00007397-exon-sc0000076-1491911889:107314..107360TCONS_00007397-exon-sc0000076-1491911889:107314..107360Clytia hemisphaericaexon
TCONS_00007397-exon-sc0000076-1491911889:105217..106407TCONS_00007397-exon-sc0000076-1491911889:105217..106407Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000076supercontigsc0000076:105217..107360 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0378007	0	0	0	0.122991	0.0464093	0.29513	0.263884	0.733989	1.03888	3.07971	0.906783	1.88998	2.8675	1.3637	1.63922	2.48566	1.78678	1.02572	0.572955	1.23236	0	0	0	0.970601	1.43149	0.278458	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007397 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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