|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007394 ID=TCONS_00007394|Name=TCONS_00007394|organism=Clytia hemisphaerica|type=transcript|length=2524bpRun BLAST on NCBI protein sequence of TCONS_00007394-protein >TCONS_00007394-protein ID=TCONS_00007394-protein|Name=TCONS_00007394-protein|organism=Clytia hemisphaerica|type=polypeptide|length=406bp MFFFSLAIIYTVFALANFIAPPICNLFGPRVAMFIGGACYCLFIASIIMPRun BLAST on NCBI transcript from alignment at sc0000076:71831..88465- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007394 ID=TCONS_00007394|Name=TCONS_00007394|organism=Clytia hemisphaerica|type=transcript|length=16635bp|location=Sequence derived from alignment at sc0000076:71831..88465- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000076:71831..88465- >TCONS_00007394 ID=TCONS_00007394|Name=TCONS_00007394|organism=Clytia hemisphaerica|type=CDS|length=17094bp|location=Sequence derived from alignment at sc0000076:71831..88465- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00007394 vs. Swiss-Prot (Human)
Match: MFS11 (UNC93-like protein MFSD11 OS=Homo sapiens GN=MFSD11 PE=2 SV=2) HSP 1 Score: 359.762 bits (922), Expect = 1.953e-114 Identity = 187/402 (46.52%), Postives = 265/402 (65.92%), Query Frame = 2
Query: 71 SLAIIYTVFALANFIAPPICNLFGPRVAMFIGGACYCLFIASIIMPLLSTLYIASVIVGVGAALIWTGQGNFLTLNSTDDTMGRNSGIFWALLQCSLLFGNMFVYFFFGGHVNVSDHGREVLYTVLLVACGIGTLALVLLRKAPSQDYQQVAQNENSDDLQSPVQDSVNPERVSGQTPLESFLAAFKLLRTTDMLMLALTIAYTGFELTFFSGVYGTSVGNIKPDKIDEPKRQIGLIGMLIGAGEITGGLLFGIFGKYTNKYGRDPIVLLGFIIHLITFYLIFLNLPNEAPL---RETDGESKLGYNMVVYGLCAYMLGFGDASFNTQLYSILGTLYSEDSAPAFALFKCIQSVAAAIGFAYGTVLVLKYQLLILVVTAFIGTLSFFYVERKHSRVKDLGYD 1267
S+AIIY VF+ +N I P + + GP+++MF G Y ++IA I P + Y ASV +G+ AA++WT QGN LT+NS + ++GRNSGIFWALLQ SL FGN+++YF + G +S+ R ++ L V +GT+ L+RK S++ + ++E+SDD V +S +++F +FKL T +ML+L++T AYTG ELTFFSGVYGT +G +E K IGL G+ IG GEI GG LFG+ K N++GR+P+VLLG ++H I FYLIFLN+P +AP+ + TD + + + V LC+++LG GD+ FNTQL SILG LYSEDSAPAFA+FK +QS+ AA+ F Y L+L +QLL++V+ F GT+SFF VE + + G D
Sbjct: 51 SMAIIYGVFSASNLITPSVVAIVGPQLSMFASGLFYSMYIAVFIQPFPWSFYTASVFIGIAAAVLWTAQGNCLTINSDEHSIGRNSGIFWALLQSSLFFGNLYIYFAWQGKTQISESDRRTVFIALTVISLVGTVLFFLIRKPDSENV--LGEDESSDDQDMEVNESAQNNLTKA---VDAFKKSFKLCVTKEMLLLSITTAYTGLELTFFSGVYGTCIGATNKFGAEE-KSLIGLSGIFIGIGEILGGSLFGLLSK-NNRFGRNPVVLLGILVHFIAFYLIFLNMPGDAPIAPVKGTDSSAYIKSSKEVAILCSFLLGLGDSCFNTQLLSILGFLYSEDSAPAFAIFKFVQSICAAVAFFYSNYLLLHWQLLVMVIFGFFGTISFFTVEWEAAAFVARGSD 445 The following BLAST results are available for this feature:
BLAST of TCONS_00007394 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.