TCONS_00007393 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007393
Unique NameTCONS_00007393
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length490

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007393 ID=TCONS_00007393|Name=TCONS_00007393|organism=Clytia hemisphaerica|type=transcript|length=490bp
TCTATTAAGGGTCAAGAACAAAACAAGAATCCACAGCAGaattttcaaaa
accgAGTCGCGATTACGTCATTAGTCCAAAATATGATTGGTTGAAAGATA
TAAGCCTGGTTTCCCCATCCACTCGCTAAAATATTCGCCACCCTGGAGAG
AAAGGGCGGCAAAAAGAAGTGAGTACGCATCCTTATGGAAACCACcccat
tttgacatttttaaacaaGCGACGTAAACGGGGGAGAGTGTGCAGAGGAG
AACAGGCGAAAGACATTTACAATCACGCTCTTCGAAACTTGCGATATGTT
GTTGTGGGAAAAGAAAGGTGATTCTGATCAAAGtggtatttatccaatga
agaAAAGATGTTGAccggcgctgacaaaatatgcacggcattgattatga
catcattaaatatgtcaatgtcgattcaacgcccgttaaagaaaataatt
tgtaaatagttctttttattgtgaaatttagaaatacgaa
Run BLAST on NCBI

transcript from alignment at sc0000076:52539..54858-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007393 ID=TCONS_00007393|Name=TCONS_00007393|organism=Clytia hemisphaerica|type=transcript|length=2320bp|location=Sequence derived from alignment at sc0000076:52539..54858- (Clytia hemisphaerica)
TCTATTAAGGGTCAAGAACAAAACAAGAATCCACAGCAGGTATAATGAAG
ATTGTTATAATTAATTTTTGAAGCTCCATCATAACTCTGAATAGCTTTTT
GAGAGAGAAAACACCATAACTACCGTCGTAAGTTTATCTAATGTCGACAT
CCGTCTTCTAATTTCGACATCCTTCTTTAGAGATAGGAATAATAAGAAGG
TCGAAATCACTGATAGACTGAAGATTTTTCCTCTCATCGCGCTAATCAAA
GTCAATCAGCAATTCCGCCCTTCCTCAGTTTCTATTGTTCCTATCTCTAA
AAAGAAGGGTGTCGACATTAGAAGACGGATGTCGACATTAGTTTAGACCA
ACTTACTGTAATCAATTGAATTGGCTGGCTGGATGTTGATAATAAAAACC
AGAAGTCTTTAACGTTCTTCGTTCATTCGCAATCTTCGATTTTTAGAGCT
AGGGTAGCCCTGATTGTTGTGAACAACAAGATTTCGAATTTTAAAAACCA
TGGTTACTTTTGTTAAGATTGCAATGGAGCAAATTGGTCCCAGTCAAGAC
AGTGTAGACCTACCGTGAAAAAGGGTAACTTGCATCAGTGGAGGCTAACA
TGCATATACCCCAATTCACAGACTTGTCTGGTCATGGTTTTCTCATCTTG
TATATGGAAATACAATTTTAAGAAAACATGTAATTAATTGAGGAAAGATT
AATATAATTACCATAAATTGCGTTTCCCAAATGACCTCACTCTTACGCTT
CATAATATGACATCTTGTTATTTAGAATTTTCAAAAACCGAGTCGCGATT
ACGTCATTAGTCCAAAATATGATTGGTTGAAAGATATAAGCCTGGTTTCC
CCATCCACTCGCTAAAATATTCGCCACCCTGGAGAGAAAGGGCGGCAAAA
AGAAGTGAGTACGCATCCTTATGGAAACCACCCCATTTTGACATTTTTAA
ACAAGCGACGTAAACGGGGGAGAGTGTGCAGAGGAGAACAGGCGAAAGAC
ATTTACAATCACGCTCTTCGAAACTTGCGATATGTTGTTGTGGGAAAAGA
AAGGTGATTCTGATCAAAGGTACGTTTTTCTATTGTCAAGTAATTTTGTC
ATAATGTTTCCATGTCAACACTTTGAAGAGAAGTAATACTGCTCTAGTTG
GTCTGTGAATTGGGGTATATGCATGTTAGCCTCCACTGATGCAAGTTACC
CTTTTTCACGGTAACTCTTCATACAAAAATTACGGGAAACACATATTTGG
ACTGCACGCCGGCACTTAAGCTGAAGTCCCGAAAAAGCGGGATAAAAATC
AGTTTTTTGCAGTTTGCAAAAAAACACCACATGGAAGATCTTTCAAATTC
AGTATGTGAATAAAGCAGTAAAAAATGCAACTTTTCTATTTTTCCTTTTT
TTTGCAAAAGTTCTAGAAATGAAAATAAAAGGATAATGATAATTGGATAC
TATCCAGTGATGATCCAACCAAGGCGCCATCGTAAAGCTAGAATCGCTTC
GCGTACTCTTCGCTTGAGAAAATGATCGACAGATTAAATTTTTCACCTGC
GCGTGAGTTCGCGGGCGTTCTGCGAGTGGTCTGAGAGGGGTCTGCGAGGG
TTCTCGGCTCAATCCTGGGACCGTGTTAAAAATGGTAGACTCAGCTTTGA
CAGATCATTTCGATGGAAGTTGTTGGAATGTTTACAATACTCTTGACAGA
AAATCTCATTTTTTGTACAAAATTCTTACACATCGCTATCAGTAGTTTTT
CAGGATACTTAAATTCTTAACCAATGTCAGTCAGGGCCTCCTTTCACTTT
ATCGATATTACGCAAACGGCAGTGTGAACTAAAATATTTTGGTTTCACTT
CCGATTTCAATCAAAGGAAAGGTCTTAGCAACAGGGCGCGCATACATAGC
AACGGGGCTGGGTAGAAAAATCTAAACATAGAATTCAAAAGAAAATACCG
ATCATCGTAAGAGCATTAAAAAATACCCCCTTTCTATGTTTAGTTTGTTC
TACCTCGAATTATAACTGAAAATATCTTCAAATAACCTTTGTCCGCTATC
AGCCCACGCGGTAATCTTTGCCCGTTCCAATTCTTAGATAATGAATAAGA
GAGGTGCGCTTAGCTAAGCCGTGCTCGCGATAAATTTATGTTTACTTCTC
TTGTATATTTTAGTGGTATTTATCCAATGAAGAAAAGATGTTGACCGGCG
CTGACAAAATATGCACGGCATTGATTATGACATCATTAAATATGTCAATG
TCGATTCAACGCCCGTTAAAGAAAATAATTTGTAAATAGTTCTTTTTATT
GTGAAATTTAGAAATACGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004159XLOC_004159Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007393-exon-sc0000076-1575043694:54820..54858TCONS_00007393-exon-sc0000076-1575043694:54820..54858Clytia hemisphaericaexon
TCONS_00007393-exon-sc0000076-1575043694:53790..54083TCONS_00007393-exon-sc0000076-1575043694:53790..54083Clytia hemisphaericaexon
TCONS_00007393-exon-sc0000076-1575043694:52539..52695TCONS_00007393-exon-sc0000076-1575043694:52539..52695Clytia hemisphaericaexon
TCONS_00007393-exon-sc0000076-1510915933:54820..54858TCONS_00007393-exon-sc0000076-1510915933:54820..54858Clytia hemisphaericaexon
TCONS_00007393-exon-sc0000076-1510915933:53790..54083TCONS_00007393-exon-sc0000076-1510915933:53790..54083Clytia hemisphaericaexon
TCONS_00007393-exon-sc0000076-1510915933:52539..52695TCONS_00007393-exon-sc0000076-1510915933:52539..52695Clytia hemisphaericaexon
TCONS_00007393-exon-sc0000076-1491911889:54820..54858TCONS_00007393-exon-sc0000076-1491911889:54820..54858Clytia hemisphaericaexon
TCONS_00007393-exon-sc0000076-1491911889:53790..54083TCONS_00007393-exon-sc0000076-1491911889:53790..54083Clytia hemisphaericaexon
TCONS_00007393-exon-sc0000076-1491911889:52539..52695TCONS_00007393-exon-sc0000076-1491911889:52539..52695Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000076supercontigsc0000076:52539..54858 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.09038	9.97262	12.8603	12.727	19.2144	15.1881	11.8494	12.157	7.66029	7.37194	5.50028	7.31542	8.30674	5.91611	6.66735	7.07815	7.67713	6.50152	5.90534	7.86483	6.95804	6.9664	3.76381	4.47472	7.56607	10.8541	9.17542	7.94466	5.18494	6.61085
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007393 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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