|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007391 ID=TCONS_00007391|Name=TCONS_00007391|organism=Clytia hemisphaerica|type=transcript|length=3899bpRun BLAST on NCBI protein sequence of TCONS_00007391-protein >TCONS_00007391-protein ID=TCONS_00007391-protein|Name=TCONS_00007391-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1230bp MTPGIDNLPSLSPYSTFGSKFTQSFQQFVKDIADSKSKTEEDRIISLEVERun BLAST on NCBI transcript from alignment at sc0000076:6479..50900- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007391 ID=TCONS_00007391|Name=TCONS_00007391|organism=Clytia hemisphaerica|type=transcript|length=44422bp|location=Sequence derived from alignment at sc0000076:6479..50900- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000076:6479..50900- >TCONS_00007391 ID=TCONS_00007391|Name=TCONS_00007391|organism=Clytia hemisphaerica|type=CDS|length=66474bp|location=Sequence derived from alignment at sc0000076:6479..50900- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00007391 vs. Swiss-Prot (Human)
Match: AP4E1 (AP-4 complex subunit epsilon-1 OS=Homo sapiens GN=AP4E1 PE=1 SV=2) HSP 1 Score: 398.667 bits (1023), Expect = 7.184e-118 Identity = 237/654 (36.24%), Postives = 374/654 (57.19%), Query Frame = 2
Query: 68 PGI--DNLPSLSPYSTFGSKFTQSFQQFVKDIADSKSKTEEDRIISLEVERLKIAILKPVNSEKQRKEQFVKLIYCDMLGKDVSFANMETVKNAQQQDLMYKRVSYTALGLFLXXXXXXXXXXXXSSIQRDLQSSNVLNICFGLFAASKLVYSDMMQAVLPLLQNLLKDKRDVVRKKTLMVFYRFWKLNPDAFDFVST-FNQYLFDTDPSVMQSSLIAYYDLIQCDPFKYKKLTSTFVNILKQILDHRLPEEFNYKGYAAPWMQXXXXXXXXXXGTDDLGESKKMYEILRQCLETTNTDQTIGCSVVYECLLTISTIYTDKSLMERATNKASVFITSEDYNMKYLGIKALSDFITTDFDYAAKHQQVIINCLQDHDDSLKRKTLELLYRMANVSNVVTICEEMIKYLRSTMDDYIRSTLVTQITTLADKFAPDNEWFIMTMNEVFELGGHLVQEDVAHNIMRLIGEXXXXXXXXXXXXXXXXXXXEATRD--LRDHALISYVTLMDKPCL--PDLLVKLVSWVVGEYIEEDMGYDL-----KSIVEKMTNMIYRPYQCSETQAWIITGITKILARSSQPSS---LFVDIDISKLGSEARRRYSELKSILKLCNPVMLSDVLPYDGSCEDIEPDETLGFLDGFVQQALLNGAQPY 1984
PG+ N P P + S F+ V+ I SK EE+++I E+ LK + P + K KE V+LIYC+MLG D SF + +K AQQ +L+ KRV Y A+ LF E+ ++ ++++ +DLQS+N++ +C L S++ +M+ AVLPL+++ L+ +++VR+K ++ Y+F + P+ + F + L D D VM +SL Y +I+ + YK LT +FV ILKQ++ +LP EFNY APW+QI LL+IL LLG DD S+ MY++L + L + + ++++EC+ T+ +IY L+E+A F+ S N+KYLG+KAL+ I D A +HQ II CL D +KR+TLELLYR+ N N+ I ++M++YL + ++Y+ LV +I LA+K+APDN WFI TMN VF +GG ++ D+ +N +RL+ E + T D LR +A+ SY+TL+D + P ++++SWV+GEY Y L + ++ K+ ++ SET+AW+I +TK+ +++ ++ L + IS L + R+ ELK + + N ++ +LP D SCED+ D +L FLDGFV + L GA PY
Sbjct: 13 PGLFLQNQPGGGPAAAKAS-FSSRLGSLVRGITALTSKHEEEKLIQQELSSLKATVSAPTTTLKMMKECMVRLIYCEMLGYDASFGYIHAIKLAQQGNLLEKRVGYLAVSLF-LHESHELLLLLVNTVVKDLQSTNLVEVCMALTVVSQIFPCEMIPAVLPLIEDKLQHSKEIVRRKAVLALYKFHLIAPNQVQHIHIKFRKALCDRDVGVMAASLHIYLRMIKENSSGYKDLTGSFVTILKQVVGGKLPVEFNYHSVPAPWLQIQLLRILGLLGKDDQRTSELMYDVLDESLRRAELNHNVTYAILFECVHTVYSIYPKSELLEKAAKCIGKFVLSPKINLKYLGLKALTYVIQQDPTLALQHQMTIIECLDHPDPIIKRETLELLYRITNAQNITVIVQKMLEYLHQSKEEYVIVNLVGKIAELAEKYAPDNAWFIQTMNAVFSVGGDVMHPDIPNNFLRLLAE----------------GFDDETEDQQLRLYAVQSYLTLLDMENVFYPQRFLQVMSWVLGEY-----SYLLDKETPEEVIAKLYKLLMNDSVSSETKAWLIAAVTKLTSQAHSSNTVERLIHEFTIS-LDTCMRQHAFELKHLHE--NVELMKSLLPVDRSCEDLVVDASLSFLDGFVAEGLSQGAAPY 640 The following BLAST results are available for this feature:
BLAST of TCONS_00007391 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.