TCONS_00007389 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007389
Unique NameTCONS_00007389
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length483

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007389 ID=TCONS_00007389|Name=TCONS_00007389|organism=Clytia hemisphaerica|type=transcript|length=483bp
catttcttcgCAGGGTATGGAAATGAAGAACTGCGACGCTAAAGCTCCAA
TCCAGTTTTCAGTCACTCAATTCCCAAGTAAACTACCTCTCAAAAACAAT
GCAACTTTCCACGTATCTGCTGGtattcaaatcaaaaattatgttcttcc
aaagaaaatcaaaattaaagttgaTGTCTCAAAACATATGTTGTTCTGGG
TGAAATTACCTTGTATTGGGTGCGATCAATTACTGTCCTGTGACAAGTTA
CCACAACTTTGTATGGTGAAAGACTTTTGCACTGATTGCTCTTTGAACGT
CAAAAATGTGAAGATTCAAATGCCAGCCgatattgaacaaaaaatacCAG
GATTTCTTCCCAATTTTGCGATTGACggTAAATACTGGTTGAAACTACGA
GTTGTCAATGCTGATAATGAGAAAGAAACGATCGCATGTGCTGAAATTAT
TACAAAATTAGACGcttaatataataaaaaaaa
Run BLAST on NCBI

protein sequence of TCONS_00007389-protein

>TCONS_00007389-protein ID=TCONS_00007389-protein|Name=TCONS_00007389-protein|organism=Clytia hemisphaerica|type=polypeptide|length=155bp
ISSQGMEMKNCDAKAPIQFSVTQFPSKLPLKNNATFHVSAGIQIKNYVLP
KKIKIKVDVSKHMLFWVKLPCIGCDQLLSCDKLPQLCMVKDFCTDCSLNV
KNVKIQMPADIEQKIPGFLPNFAIDGKYWLKLRVVNADNEKETIACAEII
TKLDA
Run BLAST on NCBI

transcript from alignment at sc0000076:1727..5513-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007389 ID=TCONS_00007389|Name=TCONS_00007389|organism=Clytia hemisphaerica|type=transcript|length=3787bp|location=Sequence derived from alignment at sc0000076:1727..5513- (Clytia hemisphaerica)
CATTTCTTCGCAGGGTATGGAAATGAAGAACTGCGGTAAGTATTTTCACA
ACCCTGTGTCACAGACACCCTGTAACCGCCCCAATGAAAAATTTCGACCA
CGTTGGAAAAATATCCTCCAATTTTAGCCCCTCTAGGAAGTCATTAGACC
CTGATTTCATCCCCATTTGAAAATTAAGGGGATAAATTGCACTTTAAAAC
CATCCCCATTGGATTTTTCGAGTTTAGAAATTTTCATCCCCACCCCATTA
TTAGTATAAGAAAAATTTCCACCGGGGCTGTGATACAAGGGTGTCTTAAC
TTTTCTTTGATATTTTTCTTACAAAGAGATATAGTTCTGGTTATCAGACG
ACTTCTAGCACCTTGCTTGACCCTTGCTTTCATTAAAATTTACCTCCGAA
TCTTGGGCTGTGAACTGCGAAAAATCTTTTTCTGCGAAATGTTTTTCCCT
TTACCCTAGTCATTCATGAGCTTTGTTCCTAAATATTTCTTTTTTGACAT
TTTTAAGCTATGTTAGGAATATGTTACTGTATCTATAATTCCTTATTGAA
AATATCTATCAAATTTTTGTATTTAGACGCTAAAGCTCCAATCCAGTTTT
CAGTCACTCAATTCCCAAGTAAACTACCTCTCAAAAACAATGCAACTTTC
CACGTATCTGCTGGTATTCAAATCAAAAATTATGTTCTTCCAAAGAAAAT
CAAAATTAAAGTTGATGTCTCAAAACATATGTTGTTCTGGGTGAAATTAC
CTTGTATTGGGTGGTAAGTTTAAGTTCAAAAAGCTGTTTGGGGAATTTTG
AAATTATTTTTCTTATGCATATGCAATTTTTTAATAAGCAACTCCAATTT
TCGGGTCAGCCCTGTGGTTACTTAGCATTCTAGCTCATTTTCTAAAAAAT
TTGCCTTAACCACTCCTGATATGATACCATATTTATGCTTATTGGGTCAA
AGGATATCGTTTGCCATGTTCAGATCATCTAAAAAAGCTTTTACTTTACG
AGTCATTTGTTCCTGGATTTGAAACCATTGGATTGCAGTGTAACTTTGTA
ATGTCAGAAATTTCATCGTCGATGGAAATTTTTATGACATATTGTTTTGA
AGTCCCCCCTCTGAGAGAGGGAACACCATCAACCAACAGGGTATTCTCTG
GCGTCAATCAGTAACGTAAATAAAGCATGGGACACATGGGGACGCGAGGT
TGCCCTCGAACCTTAGCAGCCCGGCTGCTTATAAACGTGCTCCCCGAGAT
AAGAAAGAGTGGAAAGCATTTTAAAACAAAGGTCAGGTATTGATGTGGAC
TATGTTAAAGTCTAAGACAAATCATTATCTAAGAAATAAACCTAAAGCCG
AAGAAAATTCGCAAACGGGCTTTTTGCCGAAAAGAGTTTACAGCCGGTAG
AGTCTTCTTCAAAACTCTGCGGTGGTTTTTTTTCCATATACCGCCGTAAC
GCCATATTTCCCCGTCTTTACTATCACTGCAACGGGCGATAACATCGTCT
AGTATTGAGGGAACAAATTTTTTACTGAAGTCAAAATTAGCGAAAGGCAC
ATGGTATTTCGAATCATCCAGGGAAGGGAACCAACTTTTTCCGGGTAAAT
GCCGTTTATTTTCCTTAATAAAATTGTGGAGTATAAATCTGAAAAGAAAG
GCATTTTGAGGTTAAAAGTACTGTTTATTAGCAAATTGAAATTGCGATAA
TTTTTGATCAATTTCAATTTTGTTAAATTTGGTGATTTGAGAAATTTGAA
ACACTAAAATGACGACTAGAATACTAAAAAGTTGCGACTGTGGCACATAA
TATTCTTTTGTTTAATATGGCGGGAAAGTTACTTGGAAAATGGTCGATTT
TTTTATTTGATTTGCTGAATCTTGTCAAATTTCTTAGCTAAAATTAGTCG
TCCATTAAAATAACTTTGATTTTTTTGCATTACTTTCAGCGATCAATTAC
TGTCCTGTGACAAGTTACCACAACTTTGTATGGTGAAAGACTTTTGCACT
GATTGCTCTTTGAACGTCAAAAATGTGAAGATTCAAATGCCAGCCGATAT
TGAACAAAAAATACCAGGATTTCTTCCCAATTTTGCGATTGACGTAAGTA
AAACTTTTTTACATATTTTTTTTATACGCAAGTGTATGCCCCTTGGTCCA
GGCTCGTGTATGCTTCAGTTCTCAAAGCAATTTGATTATTAGCCCTCTAG
AGCCATTTGCGCCCTCCGCTTCGCGTCGGGCCCAAATGACACTATCGGGC
GAATAATCAAACTACGCGGGCAGAAAATAACAACAACGACCTCAAACTGA
ACGCTATTGTTATATTATCAGCAATAGAGAAAAAAAGGCTGTGACTTTCA
TGTACTCTCGGTCTCGGGTACCTAACAGCCGTCCCCCGCTAATTATTTTT
TCGAAAATTTTCCACCCAGGACATTCTTATTCCAATCCCCCTCGCTTATT
AATTTTTTGAAAAATATTTTTGAAAGTTCCCTCTTTTGTCCTAATTCTGC
TGTACTACATAGCCTCCTTTTCAAAAGTTTTCCACCCAGGAATTTTTATC
GCACAACCCTCCCCCCTGCTTATTAAGTTTTGAGTTTTTTCCAACCGAAT
GCGAATTAAATAGGTTTTGTGCTCGTTAAAAAGATAGTTCCGAGTGGAAT
ATTATCGAAATAGAAAAACTTCTGAAAAGTCAATAAATGAAGATGAAAAT
CAGCGCTCAGCCAATCAGAAGCTTCGCAGATTTTCGAAAACAATAGTAAC
ACTATTTTTTTACGATATTCTTTTTTTTTTGGCTTGGAAAAGCTTAAAGC
GCTCCATGTAGACCTTCGTTCTTTACAGAATTAAGCGTATTAAAAATTAC
TTGAGCCTACAAAAAATGTTTTTTCCTGATTTTGGCTATTTTTGGCTTTT
CAGTATTTCCCTAAATTTTTAAAGCACCCCTCAAGCATTTCTCAGCCTTA
TTAAGCTTTCGACCTAAGCATCTCTGAGCCTGTTTTCGGATTTTTGTAAG
CTTATAATAAAAAAAATATGTATTCGCTGAAATATGGTATACGAAACAAA
ATTTGTGGTCACTTAAAGCAAATGGACAAATGAACTTTAAGGTTGTCCTT
GGTTATACAACATAATGGCGAACTTGGTACTTATTTCTACAATTAATCAT
GGGGAGACCCTTGATAACTAAATTTTATTGGTTTTCAAATGTCAAAAATA
ACAATAATCAGTGCTATAACATACTGGCAATTTTGGCTATTTTACCATTT
TTCGAAAATTGAAGTCCGAGAAAGAATGTCAATTTCGCTTCGGGCCTTCA
ACTTGATTTCATCGATTATTTCGATCTGGAAGGGATTTATTGGTTCGTTG
GTTTCTATGGCTATATTTCAAGCCCTACTGGACCATTTTTTAACTTTTGG
ATCCTCAAATTCTAAGGTCCTAAGTCTTAAATCTAGCGTTAAAACTCAGA
GTTATAACTCTACCCTTCCAACCTAATTTAGAGCGCTTCCAAATTGTGTA
GATATTGATAAATTGGATGAGTAGAAAAAAAATGAACCTCTTTGCAAAAT
TTCATCACTACACAATATTTTGTCCCGGTTTTGGCGGATTATGGCCTAAT
TCTGCCTGACTAATAGTCAAACGCCTGATTTTGATAAAAAACGGTGTAAA
TTTTATCAAAATATTTTCTTTTTCTTTTAGGGTAAATACTGGTTGAAACT
ACGAGTTGTCAATGCTGATAATGAGAAAGAAACGATCGCATGTGCTGAAA
TTATTACAAAATTAGACGCTTAATATAATAAAAAAAA

Coding sequence (CDS) from alignment at sc0000076:1727..5513-

>TCONS_00007389 ID=TCONS_00007389|Name=TCONS_00007389|organism=Clytia hemisphaerica|type=CDS|length=1872bp|location=Sequence derived from alignment at sc0000076:1727..5513- (Clytia hemisphaerica)
GGTAAATACTGGTTGAAACTACGAGTTGTCAATGCTGATAATGAGAAAGA
AACGATCGCATGTGCTGAAATTATTACAAAATTAGACGCTTAACGATCAA
TTACTGTCCTGTGACAAGTTACCACAACTTTGTATGGTGAAAGACTTTTG
CACTGATTGCTCTTTGAACGTCAAAAATGTGAAGATTCAAATGCCAGCCG
ATATTGAACAAAAAATACCAGGATTTCTTCCCAATTTTGCGATTGACACG
CTAAAGCTCCAATCCAGTTTTCAGTCACTCAATTCCCAAGTAAACTACCT
CTCAAAAACAATGCAACTTTCCACGTATCTGCTGGTATTCAAATCAAAAA
TTATGTTCTTCCAAAGAAAATCAAAATTAAAGTTGATGTCTCAAAACATA
TGTTGTTCTGGGTGAAATTACCTTGTATTGGGTGATTTCTTCGCAGGGTA
TGGAAATGAAGAACTGCGGGTAAATACTGGTTGAAACTACGAGTTGTCAA
TGCTGATAATGAGAAAGAAACGATCGCATGTGCTGAAATTATTACAAAAT
TAGACGCTTAACGATCAATTACTGTCCTGTGACAAGTTACCACAACTTTG
TATGGTGAAAGACTTTTGCACTGATTGCTCTTTGAACGTCAAAAATGTGA
AGATTCAAATGCCAGCCGATATTGAACAAAAAATACCAGGATTTCTTCCC
AATTTTGCGATTGACACGCTAAAGCTCCAATCCAGTTTTCAGTCACTCAA
TTCCCAAGTAAACTACCTCTCAAAAACAATGCAACTTTCCACGTATCTGC
TGGTATTCAAATCAAAAATTATGTTCTTCCAAAGAAAATCAAAATTAAAG
TTGATGTCTCAAAACATATGTTGTTCTGGGTGAAATTACCTTGTATTGGG
TGATTTCTTCGCAGGGTATGGAAATGAAGAACTGCGGGTAAATACTGGTT
GAAACTACGAGTTGTCAATGCTGATAATGAGAAAGAAACGATCGCATGTG
CTGAAATTATTACAAAATTAGACGCTTAACGATCAATTACTGTCCTGTGA
CAAGTTACCACAACTTTGTATGGTGAAAGACTTTTGCACTGATTGCTCTT
TGAACGTCAAAAATGTGAAGATTCAAATGCCAGCCGATATTGAACAAAAA
ATACCAGGATTTCTTCCCAATTTTGCGATTGACACGCTAAAGCTCCAATC
CAGTTTTCAGTCACTCAATTCCCAAGTAAACTACCTCTCAAAAACAATGC
AACTTTCCACGTATCTGCTGGTATTCAAATCAAAAATTATGTTCTTCCAA
AGAAAATCAAAATTAAAGTTGATGTCTCAAAACATATGTTGTTCTGGGTG
AAATTACCTTGTATTGGGTGATTTCTTCGCAGGGTATGGAAATGAAGAAC
TGCGGGTAAATACTGGTTGAAACTACGAGTTGTCAATGCTGATAATGAGA
AAGAAACGATCGCATGTGCTGAAATTATTACAAAATTAGACGCTTAACGA
TCAATTACTGTCCTGTGACAAGTTACCACAACTTTGTATGGTGAAAGACT
TTTGCACTGATTGCTCTTTGAACGTCAAAAATGTGAAGATTCAAATGCCA
GCCGATATTGAACAAAAAATACCAGGATTTCTTCCCAATTTTGCGATTGA
CACGCTAAAGCTCCAATCCAGTTTTCAGTCACTCAATTCCCAAGTAAACT
ACCTCTCAAAAACAATGCAACTTTCCACGTATCTGCTGGTATTCAAATCA
AAAATTATGTTCTTCCAAAGAAAATCAAAATTAAAGTTGATGTCTCAAAA
CATATGTTGTTCTGGGTGAAATTACCTTGTATTGGGTGATTTCTTCGCAG
GGTATGGAAATGAAGAACTGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004157XLOC_004157Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007389-exon-sc0000076-1575043694:5479..5513TCONS_00007389-exon-sc0000076-1575043694:5479..5513Clytia hemisphaericaexon
TCONS_00007389-exon-sc0000076-1575043694:4751..4937TCONS_00007389-exon-sc0000076-1575043694:4751..4937Clytia hemisphaericaexon
TCONS_00007389-exon-sc0000076-1575043694:3421..3574TCONS_00007389-exon-sc0000076-1575043694:3421..3574Clytia hemisphaericaexon
TCONS_00007389-exon-sc0000076-1575043694:1727..1833TCONS_00007389-exon-sc0000076-1575043694:1727..1833Clytia hemisphaericaexon
TCONS_00007389-exon-sc0000076-1510915933:5479..5513TCONS_00007389-exon-sc0000076-1510915933:5479..5513Clytia hemisphaericaexon
TCONS_00007389-exon-sc0000076-1510915933:4751..4937TCONS_00007389-exon-sc0000076-1510915933:4751..4937Clytia hemisphaericaexon
TCONS_00007389-exon-sc0000076-1510915933:3421..3574TCONS_00007389-exon-sc0000076-1510915933:3421..3574Clytia hemisphaericaexon
TCONS_00007389-exon-sc0000076-1510915933:1727..1833TCONS_00007389-exon-sc0000076-1510915933:1727..1833Clytia hemisphaericaexon
TCONS_00007389-exon-sc0000076-1491911889:5479..5513TCONS_00007389-exon-sc0000076-1491911889:5479..5513Clytia hemisphaericaexon
TCONS_00007389-exon-sc0000076-1491911889:4751..4937TCONS_00007389-exon-sc0000076-1491911889:4751..4937Clytia hemisphaericaexon
TCONS_00007389-exon-sc0000076-1491911889:3421..3574TCONS_00007389-exon-sc0000076-1491911889:3421..3574Clytia hemisphaericaexon
TCONS_00007389-exon-sc0000076-1491911889:1727..1833TCONS_00007389-exon-sc0000076-1491911889:1727..1833Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007389-proteinTCONS_00007389-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000076supercontigsc0000076:1727..5513 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.332936	0	0.109111	0	0	0.406507	4.75189	4.01443	3.95258	4.27052	1.69506	1.41748	21.6087	19.7768	6.20654	6.45321	5.77483	4.48051	4.77326	6.91187	0.355088	0	0	0.146421
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003172ML_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007389 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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