TCONS_00007377 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007377
Unique NameTCONS_00007377
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length934

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007377 ID=TCONS_00007377|Name=TCONS_00007377|organism=Clytia hemisphaerica|type=transcript|length=934bp
aaaaattttATCGCACCATTTTGGTAGTTTTAAAAGTTGTGGTTACAAAG
GGTGTGGTTGATGTGATTGACTTTTCGATACAGTGTTTAAAGTTTGGCGA
GGTCTATGACATTTACATGtatgaaaaaatttcaaaaagaaaacatcATA
ACTGCTGTCATAGCTTGCATTAAAAGTTGACAAGACCCCCGAAGAAAATC
TACCGTCAAGGTTTAATAAAAGTACTCAACAATGTCTCGACAATTCCAAA
AACAAGCTAAATCATGGCTTAACGCTCTCGAAAATTTAACAACCAATCAA
AAACAAGTAAACCAATCACGTGGTATTGCTAACACAttaaaatcaaccaa
tcaacaCACATGTCAATCATCTAAAAACACAACAGGGCGAAACAACTACG
CCACCACCGCTTTGGTACGCCAACCACCAAAACAATTCGTGCGCAATTAC
ATGGAAacaccaaaatttcatgaatgTATTAGCCGACCGAGAggaactca
tttaaaatcgggTGCTGTCCGAGAAAAACCAGACAAAATTGTATCTTTCG
GACGTTTACGTGCTTTTTGTTTAGTAACAGCTTTCATCTATTGTGGTGGA
CAGGCATCTAGCCTGGGAGCACGAATGCTTCACGAATATGAGATTTTTGA
AATACCAGATGATGAATTTGACTAGCCTTAGTCACATCAGCAATGAAATA
CCATTATTTTTTTACCGGAAGAAAATAGAAGACTTTTTCTTTAATGAAAA
AGTCATAAcagtaaaatatttcaattagatttttctatatttcattgttt
tattgctttttttttgttctctCTTTTCACATGTAAATATAGCTTTCGTG
AATGAGAGCCATCTTAAAGTACTGTATACAcgttttaaaaagtatttgta
caatatattaaaaaataaacaaaatatctGTAAG
Run BLAST on NCBI

protein sequence of TCONS_00007377-protein

>TCONS_00007377-protein ID=TCONS_00007377-protein|Name=TCONS_00007377-protein|organism=Clytia hemisphaerica|type=polypeptide|length=147bp
MSRQFQKQAKSWLNALENLTTNQKQVNQSRGIANTLKSTNQHTCQSSKNT
TGRNNYATTALVRQPPKQFVRNYMETPKFHECISRPRGTHLKSGAVREKP
DKIVSFGRLRAFCLVTAFIYCGGQASSLGARMLHEYEIFEIPDDEFD
Run BLAST on NCBI

transcript from alignment at sc0000076:358839..367202+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007377 ID=TCONS_00007377|Name=TCONS_00007377|organism=Clytia hemisphaerica|type=transcript|length=8364bp|location=Sequence derived from alignment at sc0000076:358839..367202+ (Clytia hemisphaerica)
aaaaattttATCGCACCATTTTGGTAGTTTTAAAAGTTGTGGTTACAAAG
GGTGTGGTTGATGTGATTGACTTTTCGATACAGTGTTTAAAGTTTGGCGA
GGTCTATGACATTTACATGGTGGGTAGTATTAAGGATTATGAATAGCTAA
GTTGTTGCCTATTTTACTTCTTTGATAGGGTCAAATtccggggagggggt
acttaggcaaaaatgggtcaatcacaaaaaatattacttgtCTTTACGTT
TTATTAACCGGAAGGGGGTATTAGGCAAAAAGGAGTATAAGATACAATAG
GGCCTCGATAGCAAAAATAttcagaacaagttaagaacattttaaggaat
TGCggtctctaaaacacccgatttatTAGGAAATCACTAATTTACTGaaa
gctgaaaataagaacattttaagaacattttaagaacattagcatttttg
atgttctttataaaataaaattgtataTACATCTATTTGATAGAAATGTA
ATAAAATtcatgtttttcataattttccatGTAATAgttaaattcaaaga
aaattcctttttctttgaaaattttccttttcttgATAAAATGTGACTTT
TGagttgataaaatctttatcaaattgattgatgaattttttggtTTTGG
ACTAGTTTGGTCGAAGTTTAGTTTTAGATATGAAAATTGTAGAAACTTGG
TAGGGAGATTTATTCCTGTGTATCTTGAATTGAACTGGAAGAGTCCAGGA
AATGTtcgtacagggggggggggagggtggaggatatagtgttcgggggt
agtgaaaaatctacaaaattttccttgtccgggggtaagtttactctgtt
tgggggtagttttcaaagtttgttttgagtgtccagggggtcaactgaaG
CTTGTCCAGGGGTGAGATCTGTTGTCCCGGGGGCggggtcaaaattcaaa
atgtctgggggtaaatttccaaagaaTGTTATATCCTTCCACCCCCCCCC
ATTATTCAAATTTCTTCTGGAAATGCCTATTTCTTTCTAACATGGATTGA
ATTGCAAGTAGGAAGATTTTATCGGGATTAGGAATTTCAACCCTTAGgtc
ggtcgaaaaggtgtacttGACCGTATAAAATCTTTCTTAAGTTAAGAAAT
TAACTATTTTTAAGgagttttttttaacaaaattgtaTAAGTCTACTAAA
AAGATGGGCAATTAACGTCATTAACCTTTAAGAGCTTGCTAGATGCGTGT
GTTCATCTGTTAACCCAGGGCCACTCACAcaacttttcaattttacttCC
GTAAGCACTATCAGAATCGTAAAAAATGGAGCAAAAGGGACTGAGTTCGA
GTTTGGTATGTGTTCTTTCTCAGAACGTATCCGtgttgggacaagctgga
gtttttacaagctcatgtgatttgattggtcgttaaccagtaataaaaac
aattttattactttttcaaaagaacgcgtcatctctactTCGAATGACCA
ATTaatgaagtatcttataaaaactccagctcatcccatcCGTGTTTGTG
CACGATTCAACCTTTGACCGTGATTCGCTTAACCCTTCATGAACTTTTGG
CATTACATATACGTCTCTCACATAACGACAAAAcccgaaaaaaaagtttc
tctactCTACTGAAAAGTTTAAATCAGAAGAGTCCCTCTAAAGGTAACTT
TTCCACTAAAACTTAGTCTCACCAAGTTTGAGTCCGGTTCACAAGTTATG
CAGTTCGTACATACCCGATATTCCTTCAACCCCAGTTACCTCCTAGACTA
TTAACTGTTAATTTATGTTTTCCAgtatgaaaaaatttcaaaaagaaaac
atcATAACTGCTGTCATAGCTTGCATTAAAAGTTGACAAGACCCCCGAAG
AAAATCTACCGTCAAGGTTTAATAAAAGGTATGattattaaaattttata
ttttagataatttttaaaagtttctaaTTTAAATTACCTGTTAGGTTATA
ATTAATTcatgtacattttttttttattattattattattactaaaCAGA
AATACGGTTTCAGGCGCGCATGGGCCTCTTAAACCGATCGTTTACAAAAT
ACTTTCTTAAAATAAAGCTTGTCACGAGGACTTCCTCGGACTCNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTTACTTGATTCTTCTCCCTTAGAT
ATCCTTGACATCTTGCTTGCAGCTCCTTAACAACACAGCTCAGTCTCCTC
TCATTCTCACTATTGTTTTTGTGGCTATCGGCGCAGCTTTTGATTCTTAC
TGTACATCCATAGAGTTTAAAGACCAAAAGGCTAAAGCAGACCCTTCCTC
GACCTTTCCAAagcatttcccatccaggactTCCATCTCAAGCCTTGTTT
GTatacagacccagtatctacagctaatttcaaaatttattgccgtagag
ggtctgttgtcattttcttttctcaattgagatttttcaaaccgatcGCT
GCGATGAAGTGTTGGCGAGAGGGAGGAGACGATACGTGTTGTGcagctat
ttataaatcatacttcatcgcagaggtctccgtacgatAATTtatttatc
aaacagacaatgcgcacacaGTGTACTAcaaagcgataaacgtgagatac
actctggcaCAGAGTATCTCAAGCCTAGCTTCGCGACGGAATCAAAACAG
GACGAATTTGAATTCGAATCCCGTGTATTAGCGAGCTGCTTGTTTGTATC
TTCTCGCGAATGTAATGTGATCGAATTCGTGCTTCTGATAGATATCCCAg
agcgttgtttcaacgttcaactaacgttatatggacgttgtgaacattag
ataaacgttgaaacaacgttgtgtgccagctgggatactgccatcggttt
tgtagaggtctgtgattcagacttGTATATTAGAGAGGCTCCAGGATGAA
TAGATCATACACGACTAAAAGTAGATCATGTAATAAGTCTGATACAGGCT
CTGATGATGAAATATTCAGCGTTTCTGATAATTATCATATCACGAACAAT
AAGATTTGTCAACGACTTAAAGATAGGATTACTACAGAGAGACTTTGTGA
ATAGATCGATTGTCCAATATTAATAGGGCGGGAAGGAAAATAGAGCAggc
atcttttttataagaatatagaAACCGAGagttttgcttataaaaaaaat
aaaacctacTTATAAACCTgcttataaaatttataaaacctacaatcatg
gtcgaaatatatcgAGAATCCCGGTTATTTAAACGTTTTTCAAGAATAGT
TCCGATGAGGAAGTCGactttgggctatctctttaatttaatcatGTTCA
tgatttaatcgaatatttcaatttgggatgggtcggcagacttccaggct
atattctgagccttattgctattggactatttttgaacttctgGATCATC
AGATCCTAAgacttaagtctagcgttaaaactcagagttaaaactctatc
tTTCGAATCAATTTTAGAgtacttacaaatcgattgtggtttcaaaactt
cccggtgaatttcccttttttcttaaATATTGATTGTATACCTATAATTA
CGTTATGTATTTAGGGTACACTTGACGTTctttactttgatttcattcgA
TTTAGGGTGCGTATCGAATAGTGGATGAGCATCGTTTTTTTTGACGTCGA
TTTTtaatattaccgagtttatgtatatgtgtttttctgcgacgtaGACG
GTAAAGTTCTAATCTGACTAGATcttgactgactgaggacgacggtaacc
gtcctcgattttgcgagtcattccaaatcgcttcagtcactctaccgtcc
tcaaaagtgaaagtacataaactcgctattatcgaataatggagcgtatc
gaatagtaaaacgtcaaattacatagcgtcaactgtatatgcTTAAAATC
TTTATATCAAAGCGGAGGTAGCAAAACTTTTTCTCACGTAAAGGTTATAT
AGGGCGGTATAAAATCTAGCGTTTTTTTTTGCGGGAGGGCTTGGACCCTT
TTAGTGTTTGTATTCTATGTTCGTGTCATTacttgtaaataaaaaaagac
agaAAAGACGTAAAGCTCTTAAATATTTTTCGCATCGTGTGATGCTTAAA
GAAAACTACTCTTGATAGAATGCATATTATCAAAAAGCGGGGAAAATCCT
ACGCGATTAAAACCTAGTAATATAAAATAATCTAATAGGTAATAAGTAAA
GGTATTTACTATACTatactaattttcaaaaaagaaatcctCTTTTTAAG
CTTTCCTTTTATTATGCATACTGCGAAAGGCTGTGTTAGCTCAGTCGATT
TTATTAGTACACTCTTGTGTAAGGTCTTGTGTAAGGTGAGTGAGATAAGG
AGACGAGTGAGCAAAAAGTAGACTAGATATAGATCAGTATGCAGGCTACA
ATTGTTGCCTGGAAGTGCTAGTAATTTTGTAAGTTCATTTTATAGTAGAA
CAGAACAGTACTTGGTTTTATAAGATATCGTGGAAGaatacactcatttt
gttttataagcatacggtaaatttcggctgaagctcactatgcttaagta
aagctcaattttgagcctcgcctatgcttaaccctatgcttggtaaaaaa
acGAAAAGCTTACTGTAAGTTTAGAAAGTGTACATTCTTAAGAGACCaag
ttgtgttatttataagagattaaacaaaataaaatcaccaattttgtttg
taattctcttcttcattcttctgttattttctgaagttttggaaattatg
attctaaaaatttctttggctgagcctcaaggtatgcttagcatatgctt
aattgttctggaaatttgagcttcagtatgcttataaacgttatgcttat
aaaataaaatgagtGTATGctgttgaaaagaaatattacaggggagtctc
tttaactcgaatgcgACTCCTAAATTCGAACTAGTTTTATGGTCCTCTCA
GTGCgaatactgtaagttggtctaatgtcgacataccCCATCTAATtacg
acacccttctttagatgGTAGGGATGCTAGGAAGGTTTGAATCGCTGATC
GAAACGATATACCTTGCTTAGCGGTCAGGGATGAGGAAAAAACCTTTTAT
CGACCTGCTTATTATTCCCATCTCTGAAAAGAAGGGTTTCGAAACTAGAT
GAGGAATGTCGACATAACCAACTTACGTTATGTTacaacttacttactta
tataCATTTTCTATAATTTTTCACATTGATTACTTTCAGTACTCAACAAT
GTCTCGACAATTCCAAAAACAAGCTAAATCATGGCTTAACGCTCTCGAAA
ATTTAACAACCAATCAAAAACAAGTAAACCAATCACGTGGTATTGCTAAC
ACATTAAAATCAACCGATCAACACACATGTCAATCATCTAAAAACACANN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaaaaaaaaagacagaaaa
aaaGCGTAAAGCTCATAAATATCTTTCGCATCGTTTGATGCTTAAAGAAA
ATTACTCGTGATAGAATGCATATTATCAAAAAGCGGGGAAAATCCTACGC
GATTAAAACCTAGtaatataaaaaaatcgaatAGGTAATAAGTAAAGGTA
TTTACTATactcattttcaatgaaagaaatCCTCTTTTTAAGCTTTCTTT
TATTATGCATACTGCGAAAGGCTGTGCTAGCTCAGTCGATTTTATTAGTA
TACTCTTGTGTAAGGTGAGCGAGATAAGGAGACGAATGAGCAAAGAGTAG
ATTAGATATAGATCTGTACACAGGTTACAATTATTGCCTGGAAGTGCTAG
TAATTTTGTAAGGTTATTTTATAGTAGAACATAACAGTACTTGGTTATAC
AAGATATCGTGGAAGAATACATATGctgttgaaaagaaatattacagggg
agtctctttaactcgaatgtctaaTGCGACTCCTAAATTCGAACTAGTTT
TATGGTCCTCTCAGTGCgaatactgtaagttggtctaatgtcgacatacc
CCATCTAATtacgacacccttctttagagggTAGGGATGCTAGGAAGGTT
TGAATCGCTGATCGAAACGATATACCTTGCTTAGCGGTCAGGGATGAGGA
AAAAACCTTTTATCGACCTGCTTATTATTCCCATCTCTGAAAAGAAGGGT
TTCGAAACTAGATGAGGAATGTCGACATAACCAACTTACGTTATGTTaca
acttacttacttatataCATTTTCTATAATTTTTCACATTGATTACTTTC
AGTACTCAACAATGTCTCGACAATTCCAAAAACAAGCTAAATCATGGCTT
AACGCTCTCGAAAATTTAACAACCAATCAAAAACAAGTAAACCAATCACG
TGGTATTGCTAACACAttaaaatcaaccaatcaacaCACATGTCAATCAT
CTAAAAACACAACAGGGCGAAACAACTACGCCACCACCGCTTTGGTACGC
CAACCACCAAAACAATTCGTGCGCAATTACATGGAAacaccaaaatttca
tgaatgTATTAGCCGACCGAGAggaactcatttaaaatcgggTGCTGTCC
GAGAAAAACCAGACAAAATTGTATCTTTCGGACGTTTACGTGCTTTTTGT
TTAGTAACAGCTTTCATCTATTGTGGTGGACAGGCATCTAGCCTGGGAGC
ACGAATGCTTCACGAATATGAGATTTTTGAAATACCAGATGATGAATTTG
ACTAGCCTTAGTCACATCAGCAATGAAATACCATTATTTTTTTACCGGAA
GAAAATAGAAGACTTTTTCTTTAATGAAAAAGTCATAAcagtaaaatatt
tcaattagatttttctatatttcattgttttattgctttttttttgttct
ctCTTTTCACATGTAAATATAGCTTTCGTGAATGAGAGCCATCTTAAAGT
ACTGTATACAcgttttaaaaagtatttgtacaatatattaaaaaataaac
aaaatatctGTAAG

Coding sequence (CDS) from alignment at sc0000076:358839..367202+

>TCONS_00007377 ID=TCONS_00007377|Name=TCONS_00007377|organism=Clytia hemisphaerica|type=CDS|length=444bp|location=Sequence derived from alignment at sc0000076:358839..367202+ (Clytia hemisphaerica)
ATGTCTCGACAATTCCAAAAACAAGCTAAATCATGGCTTAACGCTCTCGA
AAATTTAACAACCAATCAAAAACAAGTAAACCAATCACGTGGTATTGCTA
ACACAttaaaatcaaccaatcaacaCACATGTCAATCATCTAAAAACACA
ACAGGGCGAAACAACTACGCCACCACCGCTTTGGTACGCCAACCACCAAA
ACAATTCGTGCGCAATTACATGGAAacaccaaaatttcatgaatgTATTA
GCCGACCGAGAggaactcatttaaaatcgggTGCTGTCCGAGAAAAACCA
GACAAAATTGTATCTTTCGGACGTTTACGTGCTTTTTGTTTAGTAACAGC
TTTCATCTATTGTGGTGGACAGGCATCTAGCCTGGGAGCACGAATGCTTC
ACGAATATGAGATTTTTGAAATACCAGATGATGAATTTGACTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004148XLOC_004148Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007377-exon-sc0000076-1491911889:358839..358957TCONS_00007377-exon-sc0000076-1491911889:358839..358957Clytia hemisphaericaexon
TCONS_00007377-exon-sc0000076-1510915933:358839..358957TCONS_00007377-exon-sc0000076-1510915933:358839..358957Clytia hemisphaericaexon
TCONS_00007377-exon-sc0000076-1575043694:358839..358957TCONS_00007377-exon-sc0000076-1575043694:358839..358957Clytia hemisphaericaexon
TCONS_00007377-exon-sc0000076-1491911889:360664..360766TCONS_00007377-exon-sc0000076-1491911889:360664..360766Clytia hemisphaericaexon
TCONS_00007377-exon-sc0000076-1510915933:360664..360766TCONS_00007377-exon-sc0000076-1510915933:360664..360766Clytia hemisphaericaexon
TCONS_00007377-exon-sc0000076-1575043694:360664..360766TCONS_00007377-exon-sc0000076-1575043694:360664..360766Clytia hemisphaericaexon
TCONS_00007377-exon-sc0000076-1491911889:366491..367202TCONS_00007377-exon-sc0000076-1491911889:366491..367202Clytia hemisphaericaexon
TCONS_00007377-exon-sc0000076-1510915933:366491..367202TCONS_00007377-exon-sc0000076-1510915933:366491..367202Clytia hemisphaericaexon
TCONS_00007377-exon-sc0000076-1575043694:366491..367202TCONS_00007377-exon-sc0000076-1575043694:366491..367202Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007377-proteinTCONS_00007377-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000076supercontigsc0000076:358839..367202 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.26998	7.20559	10.9	12.0881	7.85297	7.19632	31.3309	35.5749	15.4224	14.6594	5.89973	7.78909	37.7197	24.6052	4.47368	4.11509	2.21942	5.94908	32.0956	34.4022	18.594	15.8543	15.9907	17.2414	4.23232	17.2086	2.68397	1.28898	2.77001	5.09102
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR018782MCU_reg
Vocabulary: Biological Process
TermDefinition
GO:0051560mitochondrial calcium ion homeostasis
GO:0036444mitochondrial calcium uptake
Vocabulary: Cellular Component
TermDefinition
GO:1990246uniplex complex
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051560 mitochondrial calcium ion homeostasis
biological_process GO:0036444 mitochondrial calcium uptake
cellular_component GO:1990246 uniplex complex
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007377 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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