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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007376 ID=TCONS_00007376|Name=TCONS_00007376|organism=Clytia hemisphaerica|type=transcript|length=898bp
atctgacgtcaaataaaggttttccaaatatttttcttgtgtgattttat
tttgtcaatttttaaggaaaaattttATCGCACCATTTTGGTAGTTTTAA
AAGTTGTGGTTACAAAGGGTGTGGTTGATGTGATTGACTTTTCGATACAG
TGTTTAAAGTTTGGCGAGGTCTATGACATTTACATGTACTCAACAATGTC
TCGACAATTCCAAAAACAAGCTAAATCATGGCTTAACGCTCTCGAAAATT
TAACAACCAATCAAAAACAAGTAAACCAATCACGTGGTATTGCTAACACA
ttaaaatcaaccaatcaacaCACATGTCAATCATCTAAAAACACAACAGG
GCGAAACAACTACGCCACCACCGCTTTGGTACGCCAACCACCAAAACAAT
TCGTGCGCAATTACATGGAAacaccaaaatttcatgaatgTATTAGCCGA
CCGAGAggaactcatttaaaatcgggTGCTGTCCGAGAAAAACCAGACAA
AATTGTATCTTTCGGACGTTTACGTGCTTTTTGTTTAGTAACAGCTTTCA
TCTATTGTGGTGGACAGGCATCTAGCCTGGGAGCACGAATGCTTCACGAA
TATGAGATTTTTGAAATACCAGATGATGAATTTGACTAGCCTTAGTCACA
TCAGCAATGAAATACCATTATTTTTTTACCGGAAGAAAATAGAAGACTTT
TTCTTTAATGAAAAAGTCATAAcagtaaaatatttcaattagatttttct
atatttcattgttttattgctttttttttgttctctCTTTTCACATGTAA
ATATAGCTTTCGTGAATGAGAGCCATCTTAAAGTACTGTATACAcgtttt
aaaaagtatttgtacaatatattaaaaaataaacaaaatatctGTAAG Run BLAST on NCBI transcript from alignment at sc0000076:358772..367202+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007376 ID=TCONS_00007376|Name=TCONS_00007376|organism=Clytia hemisphaerica|type=transcript|length=8431bp|location=Sequence derived from alignment at sc0000076:358772..367202+ (Clytia hemisphaerica)
atctgacgtcaaataaaggttttccaaatatttttcttgtgtgattttat
tttgtcaatttttaaggaaaaattttATCGCACCATTTTGGTAGTTTTAA
AAGTTGTGGTTACAAAGGGTGTGGTTGATGTGATTGACTTTTCGATACAG
TGTTTAAAGTTTGGCGAGGTCTATGACATTTACATGGTGGGTAGTATTAA
GGATTATGAATAGCTAAGTTGTTGCCTATTTTACTTCTTTGATAGGGTCA
AATtccggggagggggtacttaggcaaaaatgggtcaatcacaaaaaata
ttacttgtCTTTACGTTTTATTAACCGGAAGGGGGTATTAGGCAAAAAGG
AGTATAAGATACAATAGGGCCTCGATAGCAAAAATAttcagaacaagtta
agaacattttaaggaatTGCggtctctaaaacacccgatttatTAGGAAA
TCACTAATTTACTGaaagctgaaaataagaacattttaagaacattttaa
gaacattagcatttttgatgttctttataaaataaaattgtataTACATC
TATTTGATAGAAATGTAATAAAATtcatgtttttcataattttccatGTA
ATAgttaaattcaaagaaaattcctttttctttgaaaattttccttttct
tgATAAAATGTGACTTTTGagttgataaaatctttatcaaattgattgat
gaattttttggtTTTGGACTAGTTTGGTCGAAGTTTAGTTTTAGATATGA
AAATTGTAGAAACTTGGTAGGGAGATTTATTCCTGTGTATCTTGAATTGA
ACTGGAAGAGTCCAGGAAATGTtcgtacagggggggggggagggtggagg
atatagtgttcgggggtagtgaaaaatctacaaaattttccttgtccggg
ggtaagtttactctgtttgggggtagttttcaaagtttgttttgagtgtc
cagggggtcaactgaaGCTTGTCCAGGGGTGAGATCTGTTGTCCCGGGGG
CggggtcaaaattcaaaatgtctgggggtaaatttccaaagaaTGTTATA
TCCTTCCACCCCCCCCCATTATTCAAATTTCTTCTGGAAATGCCTATTTC
TTTCTAACATGGATTGAATTGCAAGTAGGAAGATTTTATCGGGATTAGGA
ATTTCAACCCTTAGgtcggtcgaaaaggtgtacttGACCGTATAAAATCT
TTCTTAAGTTAAGAAATTAACTATTTTTAAGgagttttttttaacaaaat
tgtaTAAGTCTACTAAAAAGATGGGCAATTAACGTCATTAACCTTTAAGA
GCTTGCTAGATGCGTGTGTTCATCTGTTAACCCAGGGCCACTCACAcaac
ttttcaattttacttCCGTAAGCACTATCAGAATCGTAAAAAATGGAGCA
AAAGGGACTGAGTTCGAGTTTGGTATGTGTTCTTTCTCAGAACGTATCCG
tgttgggacaagctggagtttttacaagctcatgtgatttgattggtcgt
taaccagtaataaaaacaattttattactttttcaaaagaacgcgtcatc
tctactTCGAATGACCAATTaatgaagtatcttataaaaactccagctca
tcccatcCGTGTTTGTGCACGATTCAACCTTTGACCGTGATTCGCTTAAC
CCTTCATGAACTTTTGGCATTACATATACGTCTCTCACATAACGACAAAA
cccgaaaaaaaagtttctctactCTACTGAAAAGTTTAAATCAGAAGAGT
CCCTCTAAAGGTAACTTTTCCACTAAAACTTAGTCTCACCAAGTTTGAGT
CCGGTTCACAAGTTATGCAGTTCGTACATACCCGATATTCCTTCAACCCC
AGTTACCTCCTAGACTATTAACTGTTAATTTATGTTTTCCAgtatgaaaa
aatttcaaaaagaaaacatcATAACTGCTGTCATAGCTTGCATTAAAAGT
TGACAAGACCCCCGAAGAAAATCTACCGTCAAGGTTTAATAAAAGGTATG
attattaaaattttatattttagataatttttaaaagtttctaaTTTAAA
TTACCTGTTAGGTTATAATTAATTcatgtacattttttttttattattat
tattattactaaaCAGAAATACGGTTTCAGGCGCGCATGGGCCTCTTAAA
CCGATCGTTTACAAAATACTTTCTTAAAATAAAGCTTGTCACGAGGACTT
CCTCGGACTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTACTTG
ATTCTTCTCCCTTAGATATCCTTGACATCTTGCTTGCAGCTCCTTAACAA
CACAGCTCAGTCTCCTCTCATTCTCACTATTGTTTTTGTGGCTATCGGCG
CAGCTTTTGATTCTTACTGTACATCCATAGAGTTTAAAGACCAAAAGGCT
AAAGCAGACCCTTCCTCGACCTTTCCAAagcatttcccatccaggactTC
CATCTCAAGCCTTGTTTGTatacagacccagtatctacagctaatttcaa
aatttattgccgtagagggtctgttgtcattttcttttctcaattgagat
ttttcaaaccgatcGCTGCGATGAAGTGTTGGCGAGAGGGAGGAGACGAT
ACGTGTTGTGcagctatttataaatcatacttcatcgcagaggtctccgt
acgatAATTtatttatcaaacagacaatgcgcacacaGTGTACTAcaaag
cgataaacgtgagatacactctggcaCAGAGTATCTCAAGCCTAGCTTCG
CGACGGAATCAAAACAGGACGAATTTGAATTCGAATCCCGTGTATTAGCG
AGCTGCTTGTTTGTATCTTCTCGCGAATGTAATGTGATCGAATTCGTGCT
TCTGATAGATATCCCAgagcgttgtttcaacgttcaactaacgttatatg
gacgttgtgaacattagataaacgttgaaacaacgttgtgtgccagctgg
gatactgccatcggttttgtagaggtctgtgattcagacttGTATATTAG
AGAGGCTCCAGGATGAATAGATCATACACGACTAAAAGTAGATCATGTAA
TAAGTCTGATACAGGCTCTGATGATGAAATATTCAGCGTTTCTGATAATT
ATCATATCACGAACAATAAGATTTGTCAACGACTTAAAGATAGGATTACT
ACAGAGAGACTTTGTGAATAGATCGATTGTCCAATATTAATAGGGCGGGA
AGGAAAATAGAGCAggcatcttttttataagaatatagaAACCGAGagtt
ttgcttataaaaaaaataaaacctacTTATAAACCTgcttataaaattta
taaaacctacaatcatggtcgaaatatatcgAGAATCCCGGTTATTTAAA
CGTTTTTCAAGAATAGTTCCGATGAGGAAGTCGactttgggctatctctt
taatttaatcatGTTCAtgatttaatcgaatatttcaatttgggatgggt
cggcagacttccaggctatattctgagccttattgctattggactatttt
tgaacttctgGATCATCAGATCCTAAgacttaagtctagcgttaaaactc
agagttaaaactctatctTTCGAATCAATTTTAGAgtacttacaaatcga
ttgtggtttcaaaacttcccggtgaatttcccttttttcttaaATATTGA
TTGTATACCTATAATTACGTTATGTATTTAGGGTACACTTGACGTTcttt
actttgatttcattcgATTTAGGGTGCGTATCGAATAGTGGATGAGCATC
GTTTTTTTTGACGTCGATTTTtaatattaccgagtttatgtatatgtgtt
tttctgcgacgtaGACGGTAAAGTTCTAATCTGACTAGATcttgactgac
tgaggacgacggtaaccgtcctcgattttgcgagtcattccaaatcgctt
cagtcactctaccgtcctcaaaagtgaaagtacataaactcgctattatc
gaataatggagcgtatcgaatagtaaaacgtcaaattacatagcgtcaac
tgtatatgcTTAAAATCTTTATATCAAAGCGGAGGTAGCAAAACTTTTTC
TCACGTAAAGGTTATATAGGGCGGTATAAAATCTAGCGTTTTTTTTTGCG
GGAGGGCTTGGACCCTTTTAGTGTTTGTATTCTATGTTCGTGTCATTact
tgtaaataaaaaaagacagaAAAGACGTAAAGCTCTTAAATATTTTTCGC
ATCGTGTGATGCTTAAAGAAAACTACTCTTGATAGAATGCATATTATCAA
AAAGCGGGGAAAATCCTACGCGATTAAAACCTAGTAATATAAAATAATCT
AATAGGTAATAAGTAAAGGTATTTACTATACTatactaattttcaaaaaa
gaaatcctCTTTTTAAGCTTTCCTTTTATTATGCATACTGCGAAAGGCTG
TGTTAGCTCAGTCGATTTTATTAGTACACTCTTGTGTAAGGTCTTGTGTA
AGGTGAGTGAGATAAGGAGACGAGTGAGCAAAAAGTAGACTAGATATAGA
TCAGTATGCAGGCTACAATTGTTGCCTGGAAGTGCTAGTAATTTTGTAAG
TTCATTTTATAGTAGAACAGAACAGTACTTGGTTTTATAAGATATCGTGG
AAGaatacactcattttgttttataagcatacggtaaatttcggctgaag
ctcactatgcttaagtaaagctcaattttgagcctcgcctatgcttaacc
ctatgcttggtaaaaaaacGAAAAGCTTACTGTAAGTTTAGAAAGTGTAC
ATTCTTAAGAGACCaagttgtgttatttataagagattaaacaaaataaa
atcaccaattttgtttgtaattctcttcttcattcttctgttattttctg
aagttttggaaattatgattctaaaaatttctttggctgagcctcaaggt
atgcttagcatatgcttaattgttctggaaatttgagcttcagtatgctt
ataaacgttatgcttataaaataaaatgagtGTATGctgttgaaaagaaa
tattacaggggagtctctttaactcgaatgcgACTCCTAAATTCGAACTA
GTTTTATGGTCCTCTCAGTGCgaatactgtaagttggtctaatgtcgaca
taccCCATCTAATtacgacacccttctttagatgGTAGGGATGCTAGGAA
GGTTTGAATCGCTGATCGAAACGATATACCTTGCTTAGCGGTCAGGGATG
AGGAAAAAACCTTTTATCGACCTGCTTATTATTCCCATCTCTGAAAAGAA
GGGTTTCGAAACTAGATGAGGAATGTCGACATAACCAACTTACGTTATGT
TacaacttacttacttatataCATTTTCTATAATTTTTCACATTGATTAC
TTTCAGTACTCAACAATGTCTCGACAATTCCAAAAACAAGCTAAATCATG
GCTTAACGCTCTCGAAAATTTAACAACCAATCAAAAACAAGTAAACCAAT
CACGTGGTATTGCTAACACATTAAAATCAACCGATCAACACACATGTCAA
TCATCTAAAAACACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaa
aaaaaaaagacagaaaaaaaGCGTAAAGCTCATAAATATCTTTCGCATCG
TTTGATGCTTAAAGAAAATTACTCGTGATAGAATGCATATTATCAAAAAG
CGGGGAAAATCCTACGCGATTAAAACCTAGtaatataaaaaaatcgaatA
GGTAATAAGTAAAGGTATTTACTATactcattttcaatgaaagaaatCCT
CTTTTTAAGCTTTCTTTTATTATGCATACTGCGAAAGGCTGTGCTAGCTC
AGTCGATTTTATTAGTATACTCTTGTGTAAGGTGAGCGAGATAAGGAGAC
GAATGAGCAAAGAGTAGATTAGATATAGATCTGTACACAGGTTACAATTA
TTGCCTGGAAGTGCTAGTAATTTTGTAAGGTTATTTTATAGTAGAACATA
ACAGTACTTGGTTATACAAGATATCGTGGAAGAATACATATGctgttgaa
aagaaatattacaggggagtctctttaactcgaatgtctaaTGCGACTCC
TAAATTCGAACTAGTTTTATGGTCCTCTCAGTGCgaatactgtaagttgg
tctaatgtcgacataccCCATCTAATtacgacacccttctttagagggTA
GGGATGCTAGGAAGGTTTGAATCGCTGATCGAAACGATATACCTTGCTTA
GCGGTCAGGGATGAGGAAAAAACCTTTTATCGACCTGCTTATTATTCCCA
TCTCTGAAAAGAAGGGTTTCGAAACTAGATGAGGAATGTCGACATAACCA
ACTTACGTTATGTTacaacttacttacttatataCATTTTCTATAATTTT
TCACATTGATTACTTTCAGTACTCAACAATGTCTCGACAATTCCAAAAAC
AAGCTAAATCATGGCTTAACGCTCTCGAAAATTTAACAACCAATCAAAAA
CAAGTAAACCAATCACGTGGTATTGCTAACACAttaaaatcaaccaatca
acaCACATGTCAATCATCTAAAAACACAACAGGGCGAAACAACTACGCCA
CCACCGCTTTGGTACGCCAACCACCAAAACAATTCGTGCGCAATTACATG
GAAacaccaaaatttcatgaatgTATTAGCCGACCGAGAggaactcattt
aaaatcgggTGCTGTCCGAGAAAAACCAGACAAAATTGTATCTTTCGGAC
GTTTACGTGCTTTTTGTTTAGTAACAGCTTTCATCTATTGTGGTGGACAG
GCATCTAGCCTGGGAGCACGAATGCTTCACGAATATGAGATTTTTGAAAT
ACCAGATGATGAATTTGACTAGCCTTAGTCACATCAGCAATGAAATACCA
TTATTTTTTTACCGGAAGAAAATAGAAGACTTTTTCTTTAATGAAAAAGT
CATAAcagtaaaatatttcaattagatttttctatatttcattgttttat
tgctttttttttgttctctCTTTTCACATGTAAATATAGCTTTCGTGAAT
GAGAGCCATCTTAAAGTACTGTATACAcgttttaaaaagtatttgtacaa
tatattaaaaaataaacaaaatatctGTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007376-exon-sc0000076-1491911889:358772..358957 | TCONS_00007376-exon-sc0000076-1491911889:358772..358957 | Clytia hemisphaerica | exon |
| TCONS_00007376-exon-sc0000076-1510915933:358772..358957 | TCONS_00007376-exon-sc0000076-1510915933:358772..358957 | Clytia hemisphaerica | exon |
| TCONS_00007376-exon-sc0000076-1575043694:358772..358957 | TCONS_00007376-exon-sc0000076-1575043694:358772..358957 | Clytia hemisphaerica | exon |
| TCONS_00007376-exon-sc0000076-1491911889:366491..367202 | TCONS_00007376-exon-sc0000076-1491911889:366491..367202 | Clytia hemisphaerica | exon |
| TCONS_00007376-exon-sc0000076-1510915933:366491..367202 | TCONS_00007376-exon-sc0000076-1510915933:366491..367202 | Clytia hemisphaerica | exon |
| TCONS_00007376-exon-sc0000076-1575043694:366491..367202 | TCONS_00007376-exon-sc0000076-1575043694:366491..367202 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000076 | supercontig | sc0000076:358772..367202 + |
Blast
The following BLAST results are available for this feature:
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