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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007375 ID=TCONS_00007375|Name=TCONS_00007375|organism=Clytia hemisphaerica|type=transcript|length=4862bpRun BLAST on NCBI transcript from alignment at sc0000076:300042..332579+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007375 ID=TCONS_00007375|Name=TCONS_00007375|organism=Clytia hemisphaerica|type=transcript|length=32538bp|location=Sequence derived from alignment at sc0000076:300042..332579+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00007375 vs. Swiss-Prot (Human)
Match: MEG11 (Multiple epidermal growth factor-like domains protein 11 OS=Homo sapiens GN=MEGF11 PE=2 SV=3) HSP 1 Score: 424.091 bits (1089), Expect = 4.098e-126 Identity = 293/826 (35.47%), Postives = 399/826 (48.31%), Query Frame = 3
Query: 195 CSFSESKKVTI------PVEVLTYKRCG-FFWANKCYSKKTVYRQVYRAVVKNVNFQGKRCKNGYRMVYSIPDHGRLCVPDCSNLGEQGCNLDNGGRCGTPNNCTCTKPGFEGEDCGLACMDGYYGHYCQQKCQCKNDAVCNKTDGSCQCKPGFQGQYCQEKCVE-SWGQGCQRPATCVRNNTLLLDTVNGFCTCKKGFNGTNCEQSCPEGTFDQYCKQTCSCKNGAHCDPVDGTCDCTPGYRGHHCSLQCKKRKYGKHCEENCDCSSTNTHSCDHVTGECTCFPGFTGKECGQKCEEWTFGQNCATNCSCVRNNTFSCDSINGICNCTEGFNGEFC-EKSCSTSNSTESCFKECNCTEGNGV-CQRTTGQCLCHPGFHGNHCEFQCPQGLFGVNCAQNCTCQNGANCSYIDXXXXXXXXXXXXKCDEPCTEGYYGPNCEKECPCGDHGDCDRFTGKCTCRGEYQGTYCDIMCKNETYGINCTEKCKCQTNTTEKCHAMTGECTCIKGWLPKKFCREKINCNGTHFGQDCQNECKCQKEAICDSIDGTCTCADGYRGKFCESKCLSGDYGERCQQRCKCKNGGQCDHVTGKCTCKDGFYNDFCEE-CPDGNYGKNCSMPC-LCRNGG-DCNKVTGDCDCLKPGFHGKFCENDCGNWTYGKNCQQQCSCFTMNSKDCDGDTGTCNCKDGFVGSACTKICPDGKSLDNPGSYGPDCKETCDCDFRNSNRSYTCDPQSGQCFCKAGWKGRSCTQPCDEKHFGNGC-LPCECSLDFMKGSCDQFNGSCHCLDGYQGNYCNETCPFGFYGAGCLSKCGQC--STSCDHRVG 2624
CS ES VT+ P + + Y RC KC + Y+ YR ++ + + +C GY + G C+P C+ G RC +P+ C C +PG+ G DC C ++G +C +CQC+N A+CN G+C C GF+G C+E C + G+GCQ P C + D G C C G+ G CE+ CP G+ +C+ C C+NG C + G C C PG+ G C+ C +G++C ++C C CDHVTG+C C G+ G C ++C +FG C+ +C C +N C G C C G+ G C E+ C C C C N + C TG C C PG+ G+HC CP G +G C CTCQNGA+C I G CTC G+ G C C G YGPNC C C + G C G CTC+ +QG C + C + T+G+NC E C C C + G C+C GWL ++ C FG +C C C CD + G C C G+ G C+S C G +G C C C+NGG C G C C GF C+ CP G YG C+ PC LC + C+ ++G C+CL PGF G C C +G++C Q CSC N+ C G+C C G++G C++ CP PG +GP C C C + +C + G C C GW G CTQ C FG C C+C SCD +G C C G+ G +C + C G +G GC C +C +++CDH G
Sbjct: 28 CSHWESYAVTVQESYAHPFDQIYYTRCTDILNWFKCTRHRISYKTAYRRGLRTMYRRRSQCCPGYY------ESGDFCIPLCTEECVHG-------RCVSPDTCHC-EPGWGGPDCSSGCDSDHWGPHCSNRCQCQNGALCNPITGACVCAAGFRGWRCEELCAPGTHGKGCQLPCQCRHGASC--DPRAGECLCAPGYTGVYCEELCPPGSHGAHCELRCPCQNGGTCHHITGECACPPGWTGAVCAQPCPPGTFGQNCSQDCPCHHGG--QCDHVTGQCHCTAGYMGDRCQEECPFGSFGFQCSQHCDC--HNGGQCSPTTGACECEPGYKGPRCQERLCPEGLHGPGCTLPCPCDADNTISCHPVTGACTCQPGWSGHHCNESCPVGYYGDGCQLPCTCQNGADCHSITGGCTCAPGFMGEVCAVSCAAGTYGPNCSSICSCNNGGTCSPVDGSCTCKEGWQGLDCTLPCPSGTWGLNCNESCTCANGAA--CSPIDGSCSCTPGWLGDTC---ELPCPDGTFGLNCSEHCDCSHADGCDPVTGHCCCLAGWTGIRCDSTCPPGRWGPNCSVSCSCENGGSCSPEDGSCECAPGFRGPLCQRICPPGFYGHGCAQPCPLCVHSSRPCHHISGICECL-PGFSGALCNQVCAGGYFGQDCAQLCSC--ANNGTCSPIDGSCQCFPGWIGKDCSQACP-------PGFWGPACFHACSC-----HNGASCSAEDGACHCTPGWTGLFCTQRCPAAFFGKDCGRVCQCQ---NGASCDHISGKCTCRTGFTGQHCEQRCAPGTFGYGCQQLC-ECMNNSTCDHVTG 809 HSP 2 Score: 346.28 bits (887), Expect = 1.710e-99 Identity = 242/691 (35.02%), Postives = 319/691 (46.16%), Query Frame = 3
Query: 309 VYRAVVKNVNFQGKRCKNGYRMVYSIPDHGRLCVPDCSNLGEQGCNLDNGGRCGTPNNCTCTKPGFEGEDCGLACMDGYYGHYCQQKCQCKNDAVCNKTDGSCQCKPGFQGQYCQEKCVE-SWGQGCQRPATCVRNNTLLLDTVNGFCTCKKGFNGTNCEQSCPEGTFDQYCKQTCSCKNGAHCDPVDGTCDCTPGYRGHHCSLQ-CKKRKYGKHCEENCDCSSTNTHSCDHVTGECTCFPGFTGKECGQKCEEWTFGQNCATNCSCVRNNTFSCDSINGICNCTEGFNGEFCEKSCSTSNSTESCFKECNCTEGNGVCQRTTGQCLCHPGFHGNHCEFQCPQGLFGVNCAQNCTCQNGANCSYIDXXXXXXXXXXXXKCDEPCTEGYYGPNCEKECPCGDHGDCDRFTGKCTCRGEYQGTYCDIMCKNETYGINCTEKCKCQ-------------------------------------------TNTTEKCHAMTGECTCIKGWLPKKFCREKINCNGTHFGQDCQNECKCQKEAICDSIDGTCTCADGYRGKFCESKCLSGDYGERCQQRCKCKNGGQCDHVTGKCTCKDGFYNDFC-EECPDGNYGKNCSMPCLCRNGGDCNKVTGDCDCLKPGFHGKFCENDCGNWTYGKNCQQQCSCFTMNSKDCDGDTGTCNCKDGFVGSACTK 2243
+ A V F+G RC+ + + HG+ C C C+ G C C PG+ G C C G +G +C+ +C C+N C+ G C C PG+ G C + C ++GQ C + C D V G C C G+ G C++ CP G+F C Q C C NG C P G C+C PGY+G C + C + +G C C C + NT SC VTG CTC PG++G C + C +G C C+C N C SI G C C GF GE C SC+ +C C+C G G C G C C G+ G C CP G +G+NC ++CTC NGA CS IDG+C+CT G+ G C+ PC +G +G NC + C C CD TG C C + G CD C +G NC+ C C+ +++ CH ++G C C+ G C + C G +FGQDC C C C IDG+C C G+ GK C C G +G C C C NG C G C C G+ FC + CP +GK+C C C+NG C+ ++G C C + GF G+ CE C T+G CQQ C C MN+ CD TGTC C GF G C +
Sbjct: 157 ITGACVCAAGFRGWRCEE----LCAPGTHGKGCQLPCQCRHGASCDPRAG-------ECLCA-PGYTGVYCEELCPPGSHGAHCELRCPCQNGGTCHHITGECACPPGWTGAVCAQPCPPGTFGQNCSQDCPCHHGGQC--DHVTGQCHCTAGYMGDRCQEECPFGSFGFQCSQHCDCHNGGQCSPTTGACECEPGYKGPRCQERLCPEGLHGPGCTLPCPCDADNTISCHPVTGACTCQPGWSGHHCNESCPVGYYGDGCQLPCTC--QNGADCHSITGGCTCAPGFMGEVCAVSCAAGTYGPNCSSICSCNNG-GTCSPVDGSCTCKEGWQGLDCTLPCPSGTWGLNCNESCTCANGAACSPIDGSCSCTPGWLGDTCELPCPDGTFGLNCSEHCDCSHADGCDPVTGHCCCLAGWTGIRCDSTCPPGRWGPNCSVSCSCENGGSCSPEDGSCECAPGFRGPLCQRICPPGFYGHGCAQPCPLCVHSSRPCHHISGICECLPG-FSGALCNQV--CAGGYFGQDCAQLCSCANNGTCSPIDGSCQCFPGWIGKDCSQACPPGFWGPACFHACSCHNGASCSAEDGACHCTPGWTGLFCTQRCPAAFFGKDCGRVCQCQNGASCDHISGKCTC-RTGFTGQHCEQRCAPGTFGYGCQQLCEC--MNNSTCDHVTGTCYCSPGFKGIRCDQ 824 HSP 3 Score: 275.404 bits (703), Expect = 9.801e-76 Identity = 180/476 (37.82%), Postives = 243/476 (51.05%), Query Frame = 3
Query: 441 CNLDNGGRC-GTPNNCTCTKPGFEGEDCGLACMDGYYGHYCQQKCQCKNDAVCNKTDGSCQCKPGFQGQYCQEKCVE-SWGQGCQRPATCVRNNTLLLDTVNGFCTCKKGFNGTNCEQSCPEGTFDQYCKQTCSCKNGAHCDPVDGTCDCTPGYRGHHCSLQCKKRKYGKHCEENCDCSSTNTHSCDHVTGECTCFPGFTGKECGQKCEEWTFGQNCATNCSCVRNNTFSCDSINGICNCTEGFNGEFCEKSCSTSNSTESCFKECN-CTEGNGVCQRTTGQCLCHPGFHGNHCEFQCPQGLFGVNCAQNCTCQNGANCSYIDXXXXXXXXXXXXKCDEPCTEGYYGPNCEKECPCGDHGDCDRFTGKCTCRGEYQGTYCDIMCKNETYGINCTEKCKCQTNTTEKCHAMTGECTCIKGWLPKKFCREKINCNGTHFGQDCQNECKCQKEAICDSIDGTCTCADGYRGKFCESKCL 1859
C+ DN C CTC +PG+ G C +C GYYG CQ C C+N A C+ G C C PGF G+ C C ++G C +C NN V+G CTCK+G+ G +C CP GT+ C ++C+C NGA C P+DG+C CTPG+ G C L C +G +C E+CDCS + CD VTG C C G+TG C C +G NC+ +CSC N SC +G C C GF G C++ C C + C C + C +G C C PGF G C C G FG +CAQ C+C N CS IDG+C C G+ G C + C G++GP C C C + C G C C + G +C C +G +C C+CQ + C ++G+CTC G+ + C ++ C FG CQ C+C + CD + GTC C+ G++G C+ L
Sbjct: 364 CDADNTISCHPVTGACTC-QPGWSGHHCNESCPVGYYGDGCQLPCTCQNGADCHSITGGCTCAPGFMGEVCAVSCAAGTYGPNCSSICSC--NNGGTCSPVDGSCTCKEGWQGLDCTLPCPSGTWGLNCNESCTCANGAACSPIDGSCSCTPGWLGDTCELPCPDGTFGLNCSEHCDCSHAD--GCDPVTGHCCCLAGWTGIRCDSTCPPGRWGPNCSVSCSC--ENGGSCSPEDGSCECAPGFRGPLCQRICPPGFYGHGCAQPCPLCVHSSRPCHHISGICECLPGFSGALCNQVCAGGYFGQDCAQLCSCANNGTCSPIDGSCQCFPGWIGKDCSQACPPGFWGPACFHACSCHNGASCSAEDGACHCTPGWTGLFCTQRCPAAFFGKDCGRVCQCQNGAS--CDHISGKCTCRTGFT-GQHCEQR--CAPGTFGYGCQQLCECMNNSTCDHVTGTCYCSPGFKGIRCDQAAL 827 The following BLAST results are available for this feature:
BLAST of TCONS_00007375 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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