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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007365 ID=TCONS_00007365|Name=TCONS_00007365|organism=Clytia hemisphaerica|type=transcript|length=1984bp
GTTTACaaacaaatttttcaactttttataagcataaactTATCCTCAAC
TCGATGTAATAATCAAACACAAAACcggaatattttattttatttcacgt
TACCAAACATCTGCGACCCggttaattgaaaaatttttacagCAGAGTGA
TCTTCTTGGCTTGAAGGCTGGTGTCAACCTAGGCAAGGTTGTACACAGAC
AGTGCACGTCAAATTAGAGTGGGTTTCTACGGCATTTATATTAATTTAGA
TATTGTATTACTCAACTACGGAAGTTCTCTGTCAGTCGACTGACAAAGGT
TAATTTGGAGAAGGCTATGTATCCTAGTTGCAGTGAGCGGCAAGTTGAGA
ATGATCCGGTTTTAGATAGAAGCATAAAGAAAGATCGTGATCAGTACATA
ATAAACAATCGGCATTGATTGGATGGTTTACATAGCCTGTCAACAAGGCT
GTATGGACGCCTCATGTTGCAGACCAGAGGCAAGTTAAAATGCATATTAA
GTATTTCATATCGTCTGCGATATATTTAggtataatatctaaatagttta
taaaataatatttaattttctattATATGTTCTTTTTGTTAGTTACTGTA
TTATTCCTAGGGTGTGTATGTTTTTTATCGAGTCCTTATCACAAGTAGAG
CATCAGATGTACAGATAGCTGGTCAAATCTTGGGAAGAAGGCAAGACTTT
TGAAGTTATCAGGAAATCACTTTTGGCACCATAATTGGCTAGTAAAAAGA
TCCTGCTTGGAGTTTCTGTAAAGGAGGCACTACTAATAACACGTTTTACG
AAGTTACCAATGGCTAGAATTGTTAGCATTATGCAGCTTTGGGGATCCAA
ATCATTCCGTTTTCCCTTTCAATAAAGGGCCCGTCATTGCGGGGTGTGTC
CTCAGTGACCTCCTCCGTGGCCGGGTCTGTGGGTACGCTGGGCTGGCTCC
CCGTGGGCGCGGGGTGTGTCCTCAGAGACCTCCTCCACCACAGGTTCTGT
GGGAGGGCTGGGCTGGCTTCCCGTCATTGCGGGGTGTGTCCTCAGTGACC
TCCTCCGTGGCCGGGTCTGTGGGTACGCTGGGCTGGCTCCCCGTGGGCGC
GGGGCGTGTCCTCAGAGACCTCCTCCACCACAGGTTCTGTGGGAGGGCTG
GGCTGGCTTCCCGTCATTGCGGGGTGTGTCCTCAGTGACCTCCTCCGTGG
CCGGGTCTGGGGTTAGGCAGGGCTGGCTTCCCGTCATTGCGGGGTGTGTC
CTCAGAGACCTCCTCTNGGTCCGTGGTAGGGCGGGGACACTGGGGTTAGG
GCGCTATACGTGACATCTTTCTCACAGTGTCTGGGTCCTCCATGATGGTT
GCTTCCCCTTGCAGGTATCCAAGCCCTCTCCTTATTTATGGGTATTAGTT
TAATGGCAAAAGGCAAGTTTACATATATTGTTTCCCTAGAGAGGGGTATG
GGCCTAGTTAAACAGTAATAAATCATGACGCAAGAATGATTTCTTGATTC
ACGTCAATTTTATATATAAGTTTAAGTATTTCATATCGTTTTCGATAGAT
TTAAGtataaaatcaaattaatttataagataatattttattttctatta
taTGTTCTTTTTGTTCCTATATGGTTCCTAGGGTGTGTATGTTTTTATCG
AGTCATTATCACAAGTAGAGCATCAGCTGTACAGATAGCTGGTCAAGACT
TAGACGAAGGCAAGAATTCTCAAGTTATCAAGGAATTATTTTTGGCACCC
CACAACTGGCTAACAAGTAGTAGAAAGGGCCCGGATAGAGTTGACGGTAA
AGGAGGTACGACCAATAACAAGTTTTTTTCGAGGTTACCAATGGCTAGAA
TTGATAGCATTATGCAGCTTTGGGGATCCAAATTATTCCGTTTTCCCTTT
CAATAAAGGGCCCGTCATTGCGGGGTGTGTCCTTGACCTCCTCCGTGGCC
GGGACTGTGGGTAGGCTGGGCTGGCCCGTCATTG Run BLAST on NCBI transcript from alignment at sc0000076:105219..107360+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007365 ID=TCONS_00007365|Name=TCONS_00007365|organism=Clytia hemisphaerica|type=transcript|length=2142bp|location=Sequence derived from alignment at sc0000076:105219..107360+ (Clytia hemisphaerica)
GTTTACaaacaaatttttcaactttttataagcataaactTATCCTCAAC
TCGATGTAATAATCAAACACAAAACcggaatattttattttatttcacgt
TACCAAACATCTGCGACCCggttaattgaaaaatttttacagCAGAGTGA
TCTTCTTGGCTTGAAGGCTGGTGTCAACCTAGGCAAGGTTGTACACAGAC
AGTGCACGTCAAATTAGAGTGGGTTTCTACGGCATTTATATTAATTTAGA
TATTGTATTACTCAACTACGGAAGTTCTCTGTCAGTCGACTGACAAAGGT
TAATTTGGAGAAGGCTATGTATCCTAGTTGCAGTGAGCGGCAAGTTGAGA
ATGATCCGGTTTTAGATAGAAGCATAAAGAAAGATCGTGATCAGTACATA
ATAAACAATCGGCATTGATTGGATGGTTTACATAGCCTGTCAACAAGGCT
GTATGGACGCCTCATGTTGCAGACCAGAGGCAAGTTAAAATGCATATTAA
GTATTTCATATCGTCTGCGATATATTTAggtataatatctaaatagttta
taaaataatatttaattttctattATATGTTCTTTTTGTTAGTTACTGTA
TTATTCCTAGGGTGTGTATGTTTTTTATCGAGTCCTTATCACAAGTAGAG
CATCAGATGTACAGATAGCTGGTCAAATCTTGGGAAGAAGGCAAGACTTT
TGAAGTTATCAGGAAATCACTTTTGGCACCATAATTGGCTAGTAAAAAGA
TCCTGCTTGGAGTTTCTGTAAAGGAGGCACTACTAATAACACGTTTTACG
AAGTTACCAATGGCTAGAATTGTTAGCATTATGCAGCTTTGGGGATCCAA
ATCATTCCGTTTTCCCTTTCAATAAAGGGCCCGTCATTGCGGGGTGTGTC
CTCAGTGACCTCCTCCGTGGCCGGGTCTGTGGGTACGCTGGGCTGGCTCC
CCGTGGGCGCGGGGTGTGTCCTCAGAGACCTCCTCCACCACAGGTTCTGT
GGGAGGGCTGGGCTGGCTTCCCGTCATTGCGGGGTGTGTCCTCAGTGACC
TCCTCCGTGGCCGGGTCTGTGGGTACGCTGGGCTGGCTCCCCGTGGGCGC
GGGGCGTGTCCTCAGAGACCTCCTCCACCACAGGTTCTGTGGGAGGGCTG
GGCTGGCTTCCCGTCATTGCGGGGTGTGTCCTCAGTGACCTCCTCCGTGG
CCGGGTCTGGGGTTAGGCAGGGCTGGCTTCCCGTCATTGCGGGGTGTGTC
CTCAGAGACCTCCTCTNGGTCCGTGGTAGGGCGGGGACACTGGGGTTAGG
GCGCTATACGTGACATCTTTCTCACAGTGTCTGGGTCCTCCATGATGGTT
GCTTCCCCTTGCAGGTATCCAAGCCCTCTCCTTATTTATGGGTATTAGTT
TAATGGCAAAAGGCAAGTTTACATATATTGTTTCCTTAGAGAGGGGTATG
GGCCTAGTTAAACAGTAATAAATCATGACGGAAGAATGATTTCTTGATTC
ACGTCAATTTTATATATAAGTTTAAGTATTTCATATCGTTTTCGATAGAT
TTAAGTATAAAATNNNNNNNNNNAGTTTACATATATTGTTTCCCTAGAGA
GGGGTATGGGCCTAGTTAAACAGTAATAAATCATGACGCAAGAATGATTT
CTTGATTCACGTCAATTTTATATATAAGTTTAAGTATTTCATATCGTTTT
CGATAGATTTAAGtataaaatcaaattaatttataagataatattttatt
ttctattataTGTTCTTTTTGTTCCTATATGGTTCCTAGGGTGTGTATGT
TTTTATCGAGTCATTATCACAAGTAGAGCATCAGCTGTACAGATAGCTGG
TCAAGACTTAGACGAAGGCAAGAATTCTCAAGTTATCAAGGAATTATTTT
TGGCACCCCACAACTGGCTAACAAGTAGTAGAAAGGGCCCGGATAGAGTT
GACGGTAAAGGAGGTACGACCAATAACAAGTTTTTTTCGAGGTTACCAAT
GGCTAGAATTGATAGCATTATGCAGCTTTGGGGATCCAAATTATTCCGTT
TTCCCTTTCAATAAAGGGCCCGTCATTGCGGGGTGTGTCCTTGACCTCCT
CCGTGGCCGGGACTGTGGGTAGGCTGGGCTGGCCCGTCATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007365-exon-sc0000076-1491911889:105219..106640 | TCONS_00007365-exon-sc0000076-1491911889:105219..106640 | Clytia hemisphaerica | exon |
| TCONS_00007365-exon-sc0000076-1510915933:105219..106640 | TCONS_00007365-exon-sc0000076-1510915933:105219..106640 | Clytia hemisphaerica | exon |
| TCONS_00007365-exon-sc0000076-1575043694:105219..106640 | TCONS_00007365-exon-sc0000076-1575043694:105219..106640 | Clytia hemisphaerica | exon |
| TCONS_00007365-exon-sc0000076-1491911889:106799..107360 | TCONS_00007365-exon-sc0000076-1491911889:106799..107360 | Clytia hemisphaerica | exon |
| TCONS_00007365-exon-sc0000076-1510915933:106799..107360 | TCONS_00007365-exon-sc0000076-1510915933:106799..107360 | Clytia hemisphaerica | exon |
| TCONS_00007365-exon-sc0000076-1575043694:106799..107360 | TCONS_00007365-exon-sc0000076-1575043694:106799..107360 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000076 | supercontig | sc0000076:105219..107360 + |
Blast
The following BLAST results are available for this feature:
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