TCONS_00007362 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007362
Unique NameTCONS_00007362
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length429

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007362 ID=TCONS_00007362|Name=TCONS_00007362|organism=Clytia hemisphaerica|type=transcript|length=429bp
AATTACCCCATGATTAAGATTTGACTATGGGGTAAATATGGGACACACTT
TTTAGAGATACAGTGCCTTGTCTGATAACGAGACTATTATAATTTCAAAC
CATAGTATCTTGATGTCAgaattcagtcaaaatataatcaaagtgATTGC
AGCTCTTCCTGACACTAAAGCTTGTCCCGTATTTACCCCTTTATTTTAac
tgtcccgtaattaccccagatgactatacAAATTAGAGTGTGGTGGCGGT
AAGCTCATATTTAAACATATAAACAAATTATTAGCTGACTATTTAAacac
aatttttagtgataAGCTTATCAAAACTAATCACTCATATATTTAGTGAG
ATAGGTCAATGTTAACAGATCTTTCAGGTAGAAAAGCCATCTAACTTTAT
CTCTTTTTTTGACTGACGTCTGAAGTGAC
Run BLAST on NCBI

transcript from alignment at sc0000075:722935..723363

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007362 ID=TCONS_00007362|Name=TCONS_00007362|organism=Clytia hemisphaerica|type=transcript|length=429bp|location=Sequence derived from alignment at sc0000075:722935..723363 (Clytia hemisphaerica)
GTCACTTCAGACGTCAGTCAAAAAAAGAGATAAAGTTAGATGGCTTTTCT
ACCTGAAAGATCTGTTAACATTGACCTATCTCACTAAATATATGAGTGAT
TAGTTTTGATAAGCTtatcactaaaaattgtgtTTAAATAGTCAGCTAAT
AATTTGTTTATATGTTTAAATATGAGCTTACCGCCACCACACTCTAATTT
gtatagtcatctggggtaattacgggacagtTAAAATAAAGGGGTAAATA
CGGGACAAGCTTTAGTGTCAGGAAGAGCTGCAATcactttgattatattt
tgactgaattcTGACATCAAGATACTATGGTTTGAAATTATAATAGTCTC
GTTATCAGACAAGGCACTGTATCTCTAAAAAGTGTGTCCCATATTTACCC
CATAGTCAAATCTTAATCATGGGGTAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004141XLOC_004141Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007362-exon-sc0000075-1491911889:722935..723363TCONS_00007362-exon-sc0000075-1491911889:722935..723363Clytia hemisphaericaexon
TCONS_00007362-exon-sc0000075-1510915933:722935..723363TCONS_00007362-exon-sc0000075-1510915933:722935..723363Clytia hemisphaericaexon
TCONS_00007362-exon-sc0000075-1575043694:722935..723363TCONS_00007362-exon-sc0000075-1575043694:722935..723363Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000075supercontigsc0000075:722935..723363 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.2901	1.94389	2.85575	3.1167	2.71582	1.54664	1.4513	1.74688	0.543571	1.00995	0.816902	1.44105	1.1426	2.48567	1.056	0.879634	1.69483	1.3649	1.58789	1.53772	3.3481	2.61373	0	1.51291	0.519421	0.979258	2.06776	2.59587	1.18774	1.27653
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007362 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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