|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007355 ID=TCONS_00007355|Name=TCONS_00007355|organism=Clytia hemisphaerica|type=transcript|length=2984bp
NGATTTCGCATCTTTGATTGCAAGTAATTCGATTAACTCAAGGAATAGAG
AAACATACTACAATGAAAGCACCCAGCCTTGTCAGGTCAAGGATGTTTAA
GCATCGTCTGGCCAGGAAAATGATTGGATTGGGACTGTCTGGGTGTTTTT
GGTTTCGTGGTGCGCAGGGAGAATTTTTTCTCAATCAAGAACCACTGGAA
CCTCTGTTTGGACACACCTTTGGCCAAGTCTCCAGAATGCTCTTAAGGGT
CTCTTTTGAGCTCGATGCACCTTAAAAAATTTCCCAGCGCTTCACCAGAA
GTCAGCTAGTTGCCCAGTCTTTTGAAATTTAGAATAACAAGTACCATCCA
GTGCCGCCTTCTGATAAACACTGCCCTCTTGAAAGTGACATGcttaaaac
cttgaaaatttaaGAGCCCCTTACATTTATTTGAGGAAGGTACGGTACAG
TTCATTAGTTCCTCCCCAAATATAGGTTTGCTTTTTAGGTAATTCACCTT
AATAATCTTTACTCTTCATCTTTAATTGTACAAAGTAAATGAGATTTGAA
ATGGATGTACCAAAAGCACAAGGGTCAAAGGCATCCCTACAACAGCAAGC
AGATACTACAACAGATCCTACAATAACTCAATCACCTGTTTTACAGAGTG
TCCAATCACAACAATCCCAGCTGAATAGCTACCATGATAAAAGGAGAATT
GTTGTAGACTTATCTTCGTTGCCATTGCAAATTTTCCTACAcctaaatgt
ttatttttctattttttattggATCGTTGAACTGTTGCTTTATGTTTACA
AAGGACTGAGCTTGCCTTATCCAGACCTCCATGGAACGTTGACTTTGGAG
ATTGTGCTACTTTTCTTGGTAGCTTTCATTGAAGGGTTTCGTTTATTTTT
TGGATATAAAGGGAACCTTGGTGAACGCAAACAAGCACTTATTTGGTCTA
TTATTCTGGCCCTACCAATCTTGGTATCTCAGTTATACCTCATTCTATGG
CAAACATACGTTTTGAGGATCGAAGTAATTTTCTGtgctatattttttgt
tttggttggGTTAGAAGTACTCCTCTCTACTGCAACTGTTTGGACTTTTC
AAAGACACGAAACATTTGTTCATGGTTAAAGAGAACAGAAGAGacctttt
cattgtttttaacactgtaaatactatttttatttattcttttgaAAGAT
ATCTTTATTAAAAGTtggttttaaaatatttttttcatgataaaTTCACT
GTTGTTCTTTCTGGTCCTTTTGTATTTAGTGCAGCCCGAACAAATTATCT
ATATCGAGGATAAGACTGGATAAGactgtttttgtctttttttgaaaagt
tttaccTAACCAGAGAAAGCTTAAACATGACATTACCTTTCCttttacaa
atttgattttgtttattttcagataaaaattcaaaatggggCTGTTACAT
CAGATTAAACAATATTTTCATAACATGATTTTTACAGTGAAGTCATTATC
TCATGACTCATCCAGGCCAACCAGAGCTTATTTTGATGCAATGTTGGAGC
CGTTATACTGGTTTATTGACAAGTTCACAAGATATATTGGGCTTTTAATG
GTTATAATGGTCATTATTTTAACAACATCAGTTGTAGTATTCTGGTACAA
GTTTTTGTTACCTACAATCTCCACTTATTCTCAATTCTGGTTCTGGTATC
ATTGCATTGTATCTCATTATCTACTGATCAATATTGTGTTTCATTACTTC
AAAGCTGTTTCCACAAGCGCTGGTGTACCACCTCAACATTTACCAATGGA
GGATATTAAAGGTGCAGTTGTGTGTAAACATTGTGTTCAACCAAAACCAC
CAAGAACACATCATTGTTCGATTTGTGATTcctgttttttgaaaatggat
CATCACTGCCCTTGGATGAATAATTGTATTGGACACTTTAATCACCGATA
TTTTGTATCCTTCTGTATCTTTATGTGGTTTGGTACTGTGTATGTTAGTT
CTTCATCTTTTGATCTCTTCACTTACCATTTTGGTCACCCAGGTGTGTTT
CTCGATCCCAAAAAACTGTCTAAAATTCTTCTACTCAGCCTTGGTTTCGG
AGATGTATTGGAACAGCTTTTCAAGCAAATGAATATAcattcaaagtttt
ttcaaaaggaaTTCCAAAAGCAAGTTGACGCGTACCGGCCACATCCAGGT
AGATTCTCAGATGCTGAAATTGATGAGTGGGAACACATTGGGATCATATA
TTTGTTTTTGTTAACTATTGCTGTTACAGTGGCTTTGGGAATGTTGAATT
GCTATCATCTTTGGTTAGTTAGCCGTGGTGAAACCTCTATCGAAGTTCAC
ATCAACAAAACGGAACGTAGGAAAGCTGCTCAAAGAGGAATGGGTTATAA
TAATCCTTACAATCATGGAAGGAAAAATAATTTCCGCTTCCTCTTTGGTT
TGAATGGTAAGCGTGGTATCATGAGTGTTTTACTGCCATCTTCTCATTTA
CCAGATGGTGATGGTTTGAGTTGGCCGAATAACAAAAAACCTGTTCATTA
TCCTGACCCGAAAGCCTATGAAAGGTACGAGGAAGCCCAAAAACGTAACC
TTTTTAGGAAAATATGTCCATGttagttttcaaaataatttgtaGCTTTT
ACAAAGTCATGCTCTACAATCAATCAAGGAGTGAGGGGTGACCGTTTACT
TTAGTATGTATTTTAGGCTAGAATTGAGATAAAGATTCCACTGTAACACT
ATGATtataaaattttcattcataTTTATTTAGACTGTCATTCAAAAGTA
TTTACTATAGTCAATAAAATCCTATGAATGAGttcttttgaaactttttt
atgaatttaaAACAGATTTAAATGGATATCTGATCTAGATCCTGAAAAAA
CATTGTGACTGAAAAAACATACCATTTTGCGGTTGACAGTATTAATGCAT
GTTTTTGgctgaatattttttatttaaattttgt Run BLAST on NCBI protein sequence of TCONS_00007355-protein >TCONS_00007355-protein ID=TCONS_00007355-protein|Name=TCONS_00007355-protein|organism=Clytia hemisphaerica|type=polypeptide|length=396bp
MGLLHQIKQYFHNMIFTVKSLSHDSSRPTRAYFDAMLEPLYWFIDKFTRY
IGLLMVIMVIILTTSVVVFWYKFLLPTISTYSQFWFWYHCIVSHYLLINI
VFHYFKAVSTSAGVPPQHLPMEDIKGAVVCKHCVQPKPPRTHHCSICDSC
FLKMDHHCPWMNNCIGHFNHRYFVSFCIFMWFGTVYVSSSSFDLFTYHFG
HPGVFLDPKKLSKILLLSLGFGDVLEQLFKQMNIHSKFFQKEFQKQVDAY
RPHPGRFSDAEIDEWEHIGIIYLFLLTIAVTVALGMLNCYHLWLVSRGET
SIEVHINKTERRKAAQRGMGYNNPYNHGRKNNFRFLFGLNGKRGIMSVLL
PSSHLPDGDGLSWPNNKKPVHYPDPKAYERYEEAQKRNLFRKICPC Run BLAST on NCBI transcript from alignment at sc0000075:617419..620402 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007355 ID=TCONS_00007355|Name=TCONS_00007355|organism=Clytia hemisphaerica|type=transcript|length=2984bp|location=Sequence derived from alignment at sc0000075:617419..620402 (Clytia hemisphaerica)
acaaaatttaaataaaaaatattcagcCAAAAACATGCATTAATACTGTC
AACCGCAAAATGGTATGTTTTTTCAGTCACAATGTTTTTTCAGGATCTAG
ATCAGATATCCATTTAAATCTGTTttaaattcataaaaaagtttcaaaag
aaCTCATTCATAGGATTTTATTGACTATAGTAAATACTTTTGAATGACAG
TCTAAATAAAtatgaatgaaaattttataATCATAGTGTTACAGTGGAAT
CTTTATCTCAATTCTAGCCTAAAATACATACTAAAGTAAACGGTCACCCC
TCACTCCTTGATTGATTGTAGAGCATGACTTTGTAAAAGCtacaaattat
tttgaaaactaaCATGGACATATTTTCCTAAAAAGGTTACGTTTTTGGGC
TTCCTCGTACCTTTCATAGGCTTTCGGGTCAGGATAATGAACAGGTTTTT
TGTTATTCGGCCAACTCAAACCATCACCATCTGGTAAATGAGAAGATGGC
AGTAAAACACTCATGATACCACGCTTACCATTCAAACCAAAGAGGAAGCG
GAAATTATTTTTCCTTCCATGATTGTAAGGATTATTATAACCCATTCCTC
TTTGAGCAGCTTTCCTACGTTCCGTTTTGTTGATGTGAACTTCGATAGAG
GTTTCACCACGGCTAACTAACCAAAGATGATAGCAATTCAACATTCCCAA
AGCCACTGTAACAGCAATAGTTAACAAAAACAAATATATGATCCCAATGT
GTTCCCACTCATCAATTTCAGCATCTGAGAATCTACCTGGATGTGGCCGG
TACGCGTCAACTTGCTTTTGGAAttccttttgaaaaaactttgaatgTAT
ATTCATTTGCTTGAAAAGCTGTTCCAATACATCTCCGAAACCAAGGCTGA
GTAGAAGAATTTTAGACAGTTTTTTGGGATCGAGAAACACACCTGGGTGA
CCAAAATGGTAAGTGAAGAGATCAAAAGATGAAGAACTAACATACACAGT
ACCAAACCACATAAAGATACAGAAGGATACAAAATATCGGTGATTAAAGT
GTCCAATACAATTATTCATCCAAGGGCAGTGATGatccattttcaaaaaa
caggAATCACAAATCGAACAATGATGTGTTCTTGGTGGTTTTGGTTGAAC
ACAATGTTTACACACAACTGCACCTTTAATATCCTCCATTGGTAAATGTT
GAGGTGGTACACCAGCGCTTGTGGAAACAGCTTTGAAGTAATGAAACACA
ATATTGATCAGTAGATAATGAGATACAATGCAATGATACCAGAACCAGAA
TTGAGAATAAGTGGAGATTGTAGGTAACAAAAACTTGTACCAGAATACTA
CAACTGATGTTGTTAAAATAATGACCATTATAACCATTAAAAGCCCAATA
TATCTTGTGAACTTGTCAATAAACCAGTATAACGGCTCCAACATTGCATC
AAAATAAGCTCTGGTTGGCCTGGATGAGTCATGAGATAATGACTTCACTG
TAAAAATCATGTTATGAAAATATTGTTTAATCTGATGTAACAGccccatt
ttgaatttttatctgaaaataaacaaaatcaaatttgtaaaaGGAAAGGT
AATGTCATGTTTAAGCTTTCTCTGGTTAggtaaaacttttcaaaaaaaga
caaaaacagtCTTATCCAGTCTTATCCTCGATATAGATAATTTGTTCGGG
CTGCACTAAATACAAAAGGACCAGAAAGAACAACAGTGAAtttatcatga
aaaaaatattttaaaaccaACTTTTAATAAAGATATCTTtcaaaagaata
aataaaaatagtatttacagtgttaaaaacaatgaaaaggtCTCTTCTGT
TCTCTTTAACCATGAACAAATGTTTCGTGTCTTTGAAAAGTCCAAACAGT
TGCAGTAGAGAGGAGTACTTCTAACccaaccaaaacaaaaaatatagcaC
AGAAAATTACTTCGATCCTCAAAACGTATGTTTGCCATAGAATGAGGTAT
AACTGAGATACCAAGATTGGTAGGGCCAGAATAATAGACCAAATAAGTGC
TTGTTTGCGTTCACCAAGGTTCCCTTTATATCCAAAAAATAAACGAAACC
CTTCAATGAAAGCTACCAAGAAAAGTAGCACAATCTCCAAAGTCAACGTT
CCATGGAGGTCTGGATAAGGCAAGCTCAGTCCTTTGTAAACATAAAGCAA
CAGTTCAACGATccaataaaaaatagaaaaataaacatttaggTGTAGGA
AAATTTGCAATGGCAACGAAGATAAGTCTACAACAATTCTCCTTTTATCA
TGGTAGCTATTCAGCTGGGATTGTTGTGATTGGACACTCTGTAAAACAGG
TGATTGAGTTATTGTAGGATCTGTTGTAGTATCTGCTTGCTGTTGTAGGG
ATGCCTTTGACCCTTGTGCTTTTGGTACATCCATTTCAAATCTCATTTAC
TTTGTACAATTAAAGATGAAGAGTAAAGATTATTAAGGTGAATTACCTAA
AAAGCAAACCTATATTTGGGGAGGAACTAATGAACTGTACCGTACCTTCC
TCAAATAAATGTAAGGGGCTCttaaattttcaaggttttaagCATGTCAC
TTTCAAGAGGGCAGTGTTTATCAGAAGGCGGCACTGGATGGTACTTGTTA
TTCTAAATTTCAAAAGACTGGGCAACTAGCTGACTTCTGGTGAAGCGCTG
GGAAATTTTTTAAGGTGCATCGAGCTCAAAAGAGACCCTTAAGAGCATTC
TGGAGACTTGGCCAAAGGTGTGTCCAAACAGAGGTTCCAGTGGTTCTTGA
TTGAGAAAAAATTCTCCCTGCGCACCACGAAACCAAAAACACCCAGACAG
TCCCAATCCAATCATTTTCCTGGCCAGACGATGCTTAAACATCCTTGACC
TGACAAGGCTGGGTGCTTTCATTGTAGTATGTTTCTCTATTCCTTGAGTT
AATCGAATTACTTGCAATCAAAGATGCGAAATCN Coding sequence (CDS) from alignment at sc0000075:617419..620402 >TCONS_00007355 ID=TCONS_00007355|Name=TCONS_00007355|organism=Clytia hemisphaerica|type=CDS|length=1191bp|location=Sequence derived from alignment at sc0000075:617419..620402 (Clytia hemisphaerica)
ctaaCATGGACATATTTTCCTAAAAAGGTTACGTTTTTGGGCTTCCTCGT
ACCTTTCATAGGCTTTCGGGTCAGGATAATGAACAGGTTTTTTGTTATTC
GGCCAACTCAAACCATCACCATCTGGTAAATGAGAAGATGGCAGTAAAAC
ACTCATGATACCACGCTTACCATTCAAACCAAAGAGGAAGCGGAAATTAT
TTTTCCTTCCATGATTGTAAGGATTATTATAACCCATTCCTCTTTGAGCA
GCTTTCCTACGTTCCGTTTTGTTGATGTGAACTTCGATAGAGGTTTCACC
ACGGCTAACTAACCAAAGATGATAGCAATTCAACATTCCCAAAGCCACTG
TAACAGCAATAGTTAACAAAAACAAATATATGATCCCAATGTGTTCCCAC
TCATCAATTTCAGCATCTGAGAATCTACCTGGATGTGGCCGGTACGCGTC
AACTTGCTTTTGGAAttccttttgaaaaaactttgaatgTATATTCATTT
GCTTGAAAAGCTGTTCCAATACATCTCCGAAACCAAGGCTGAGTAGAAGA
ATTTTAGACAGTTTTTTGGGATCGAGAAACACACCTGGGTGACCAAAATG
GTAAGTGAAGAGATCAAAAGATGAAGAACTAACATACACAGTACCAAACC
ACATAAAGATACAGAAGGATACAAAATATCGGTGATTAAAGTGTCCAATA
CAATTATTCATCCAAGGGCAGTGATGatccattttcaaaaaacaggAATC
ACAAATCGAACAATGATGTGTTCTTGGTGGTTTTGGTTGAACACAATGTT
TACACACAACTGCACCTTTAATATCCTCCATTGGTAAATGTTGAGGTGGT
ACACCAGCGCTTGTGGAAACAGCTTTGAAGTAATGAAACACAATATTGAT
CAGTAGATAATGAGATACAATGCAATGATACCAGAACCAGAATTGAGAAT
AAGTGGAGATTGTAGGTAACAAAAACTTGTACCAGAATACTACAACTGAT
GTTGTTAAAATAATGACCATTATAACCATTAAAAGCCCAATATATCTTGT
GAACTTGTCAATAAACCAGTATAACGGCTCCAACATTGCATCAAAATAAG
CTCTGGTTGGCCTGGATGAGTCATGAGATAATGACTTCACTGTAAAAATC
ATGTTATGAAAATATTGTTTAATCTGATGTAACAGccccat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007355-exon-sc0000075-1491911889:617419..620402 | TCONS_00007355-exon-sc0000075-1491911889:617419..620402 | Clytia hemisphaerica | exon |
| TCONS_00007355-exon-sc0000075-1510915933:617419..620402 | TCONS_00007355-exon-sc0000075-1510915933:617419..620402 | Clytia hemisphaerica | exon |
| TCONS_00007355-exon-sc0000075-1575043694:617419..620402 | TCONS_00007355-exon-sc0000075-1575043694:617419..620402 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000075 | supercontig | sc0000075:617419..620402 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001594 | Palmitoyltrfase_DHHC |
Blast
BLAST of TCONS_00007355 vs. Swiss-Prot (Human)
Match: ZDH16 (Probable palmitoyltransferase ZDHHC16 OS=Homo sapiens GN=ZDHHC16 PE=1 SV=1) HSP 1 Score: 251.906 bits (642), Expect = 2.594e-74 Identity = 152/363 (41.87%), Postives = 209/363 (57.58%), Query Frame = 2
Query: 1442 LLHQIKQYFHNMIFTVKSLSHDSSRPTRAYFDAMLEPLYWFIDKFTRYIGXXXXXXXXXXXXSVVVFWYKFLLPTI-STYSQFWFWYHCIVSHYLLINIVFHYFKAVSTSAGVPPQHLPMEDIKGAVVCKHCVQPKPPRTHHCSICDSCFLKMDHHCPWMNNCIGHFNHRYFVSFCIFMWFGTVYVSSSSFDLFTYHFGHPGVFLDPXXXXXXXXXXXGFGDVLEQLFKQMNIHSKFFQKEFQKQVDAYRPHPGRFSDAEIDEWEHIGIIYLFLLTIAVTVALGMLNCYHLWLVSRGETSIEVHINKTERRKAAQRGMGYNNPYNHGRKNNFRFLFGLN-GKRGIMSVLLPSSHLPDGDGLSW 2524
LL + Q + ++SL ++S + DA EP+YW +D R+ G++ V++VI+LT S+V Y +LP I TYS +H SH+ LI IVFHY++A++T G PPQ DI +CK C+ PKP RTHHCSIC+ C LKMDHHCPW+NNC+GH+NHRYF SFC FM G VY S S+DLF + +E++ KQ++ K + Q P P FS E H ++YL+ L +V +ALG L +H L+SRGETSIE HINK ERR+ +G + NPYN+G +N++ G++ G+ + VLLPSSHLP G+G+SW
Sbjct: 31 LLRGLVQRWRYGKVCLRSLLYNSFGGSDTAVDAAFEPVYWLVDNVIRWFGVVFVVLVIVLTGSIVAIAYLCVLPLILRTYSVPRLCWHFFYSHWNLILIVFHYYQAITTPPGYPPQG--RNDIATVSICKKCIYPKPARTHHCSICNRCVLKMDHHCPWLNNCVGHYNHRYFFSFCFFMTLGCVYCSYGSWDLFREAYA-----------------------AIEKM-KQLD---KNKLQAVANQTYHQTP-PPTFSFRE--RMTHKSLVYLWFLCSSVALALGALTVWHAVLISRGETSIERHINKKERRRLQAKGRVFRNPYNYGCLDNWKVFLGVDTGRHWLTRVLLPSSHLPHGNGMSW 361
The following BLAST results are available for this feature:
|
