TCONS_00007336 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007336
Unique NameTCONS_00007336
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length793

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007336 ID=TCONS_00007336|Name=TCONS_00007336|organism=Clytia hemisphaerica|type=transcript|length=793bp
AAATGATATCCATTtgagagaattaaaaaaagtgaTATAGCCTTTTGTAA
ATAGATGCAATTTTATGCAATTTTTTTCTACATATTTTTACGTTGTTGAA
TTTTATACAATTTTTCTTGTAATTTCCGTAATGTTTTACGTTggtttttt
aattattatttatttgatATGTTAGTTGCTGTTTCATAGAACTTTACCAA
CCGTAAAACGACTATTGAAGTAAAAGAGGAAAGAGAATTGCCAAAATCGA
AAACTTGAAGTTGTTTAAATTGTTCATTCACCAAGAGNAACAACCAGCTC
CGTGAAAAAGCCCTATGAATGGGTCGAACCCAAAAAGATAAGATCATTCC
CACTCTCATAAAGAGGTGGAAAAACgttaaataaatgaaaaacgaaaaca
atagaaagaacaatgaaacacaaaaagagattttttgaaCCAAGTCATGT
TAGCGCAGTGGTTTATCCCTGATAATGGATCAGAAGCCCGGAGATTTCTT
CATTTAGCAATGTCAATAGAGCGTGTCAAAGTGAGTTTAGTGTCTTTGAC
ATGACATTTTGAGACTTTtagttaaaaatacaaaaagactTACTGGGACT
GCTACGTCGGTGGTTTAAGCATCGTTGAATCAATTGTAAATAGCCAAATC
TTTGATGGTCTACCTAATTGGTAATTTCTTGTTGTATATAGTTTTCCTCT
TTTATAATcagtttttgctatttttatttCTGGTTTTATTAGTTGTTGTA
GATTATTTctaaagaaataaaatgaaaacactaTCAAAGATCA
Run BLAST on NCBI

transcript from alignment at sc0000075:14818..15610

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007336 ID=TCONS_00007336|Name=TCONS_00007336|organism=Clytia hemisphaerica|type=transcript|length=793bp|location=Sequence derived from alignment at sc0000075:14818..15610 (Clytia hemisphaerica)
TGATCTTTGAtagtgttttcattttatttctttagAAATAATCTACAACA
ACTAATAAAACCAGaaataaaaatagcaaaaactgATTATAAAAGAGGAA
AACTATATACAACAAGAAATTACCAATTAGGTAGACCATCAAAGATTTGG
CTATTTACAATTGATTCAACGATGCTTAAACCACCGACGTAGCAGTCCCA
GTAagtctttttgtatttttaactaAAAGTCTCAAAATGTCATGTCAAAG
ACACTAAACTCACTTTGACACGCTCTATTGACATTGCTAAATGAAGAAAT
CTCCGGGCTTCTGATCCATTATCAGGGATAAACCACTGCGCTAACATGAC
TTGGttcaaaaaatctctttttgtgtttcattgttctttctattgttttc
gtttttcatttatttaacGTTTTTCCACCTCTTTATGAGAGTGGGAATGA
TCTTATCTTTTTGGGTTCGACCCATTCATAGGGCTTTTTCACGGAGCTGG
TTGTTNCTCTTGGTGAATGAACAATTTAAACAACTTCAAGTTTTCGATTT
TGGCAATTCTCTTTCCTCTTTTACTTCAATAGTCGTTTTACGGTTGGTAA
AGTTCTATGAAACAGCAACTAACATatcaaataaataataattaaaaaac
cAACGTAAAACATTACGGAAATTACAAGAAAAATTGTATAAAATTCAACA
ACGTAAAAATATGTAGAAAAAAATTGCATAAAATTGCATCTATTTACAAA
AGGCTATAtcactttttttaattctctcaAATGGATATCATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004115XLOC_004115Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007336-exon-sc0000075-1491911889:14818..15610TCONS_00007336-exon-sc0000075-1491911889:14818..15610Clytia hemisphaericaexon
TCONS_00007336-exon-sc0000075-1510915933:14818..15610TCONS_00007336-exon-sc0000075-1510915933:14818..15610Clytia hemisphaericaexon
TCONS_00007336-exon-sc0000075-1575043694:14818..15610TCONS_00007336-exon-sc0000075-1575043694:14818..15610Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000075supercontigsc0000075:14818..15610 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0607496	0.0592404	0.0687838	0	0	0.0647376	0	0	0.767887	0.19023	0.0615474	3.15579	8.56536	10.0281	3.9325	1.51778	0.0912089	0.841376	0.193734	0.405458	0	0	0.0696542	0.0633258	0.847913	1.62991	0.0832997	0.0888997	0	0.206093
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007336 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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