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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007332 ID=TCONS_00007332|Name=TCONS_00007332|organism=Clytia hemisphaerica|type=transcript|length=1000bp
CTTCAGTTATATTCATTTGACtttagaataaaagaaaaagaaaaagaaat
atagaACCAAAAATCCTCCATAAAATCGAAAAGAAATGCCAGGAAAAGAT
ACATTAGATCCAGTTTCTTTACCAACGCTGGTGGATTTTGATTTGCGCGT
TGATGTCATTTCATCTTCCAATCAGATCAGTCGAATTTCGGTACCAAGAT
GCTTGTTGCAACTTCAAgttTTAGACAAAGGGAATACAAAAGGCACAGCC
GAGGAAGAAAAACCATCAAATATTACTGTCGAACTTTCTAAAGAAACCTT
AGACACTATGTTAGATGGTTTAGGCAAAATTCGTGATCAATTAAATTCAG
TTGTTAGTCGGTGATCAATCTCTGAAACGATACTTAATGGATATAGTTGT
TTTGTTCAAATTATTAACACAAGGACCTACGTGGGTATCCTTTAAAGTAA
TTATGTAAATCAGGATTGATTGCAATTTAAATGCTAGCTAAAGAGAACCC
TGTACATAGCTGCGGGATGGAAATTATTACTTGATGATTTGCAATTGATT
CCTTGTTGagtaaataagtaaataaaataACAGACTCGAACCTACCTCCA
ATGATCTTTAATAAATTAGTAATGATTCAATCTACTGGATAAAGCATGCA
CCTCTAATTTTATTatctaaattgatttaaattttggtaaatttcaACAT
GTAGAGATTTATTAATGgtaatttattgataaaaagaataaccagaaact
tcatgttttttttttggtaatttattgttatatatttttttaatatctaA
ATTATAAGCACTTTACGCGATCCATTTTTATACCGAAAATGTTCTGATGG
ACTACATTAAATTTATTCtccttttctgaaaatttgattcGAGTCTAGGA
ACCAAAAAtagagatatttaactcttcaATGATTTCGGTCTCGtttcaaa
gtttgttttgaattttgttttgaaaaaaaatgtcaaactttttcttcaca Run BLAST on NCBI transcript from alignment at sc0000075:615376..616976- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007332 ID=TCONS_00007332|Name=TCONS_00007332|organism=Clytia hemisphaerica|type=transcript|length=1601bp|location=Sequence derived from alignment at sc0000075:615376..616976- (Clytia hemisphaerica)
CTTCAGTTATATTCATTTGACTTTAGAATAAAAGAAAAAGAAAAAGAAAT
ATAGAACCAAAAATCCTCCATAAAATCGAAAAGAAATGCCAGGAAAAGAT
ACATTAGATCCAGGTTGGTAATCTTTTAATTTCCGATGCGCTGTTTTTTT
TATCTTTTTACCTTTTAACTTCTTTTTTTTAAGTTGTATAAACGCTTGAA
TTAAGCGATGACACGTACGAAATCGTATATCACACCTCTGTGTCACAGAC
CCGTTGGGACCCCAGCCCCACTGGAAAATTAAGCAAAAATTGGGAGTGGG
AAAATACCTTTGAATTTCAGCTCCACTGAGAAATTTATGTTTTGGACGAG
AAATTCTATTTTGACGGTTGAGAGATAGAAAATTTTCATTCCATTTCAGT
TTCTTTACCAACGCTGGTGGATTTTGATTTGCGCGTTGATGTCATTTCAT
CTTCCAATCAGATCAGTCGAATTTCGGTACCAAGATGCTTGTTGCAACTT
CAAGTTTGTTTGATTCTTTTTTCGTGATCATACTTTTTAGAATATCCTAT
TTGATGGATCATGGATGAGTCGTTCTTGGTCTTTTTCTCACACATAATTT
TTCATTTAGCTTTTGAGCATAAACCCTCCAGGAAACTATTCCTCTTTTCT
TGTCGACCTTGCAAAAATATTTGAAAATCAATCCTGTACCTAGTGACCAT
GGGCATCCAAATCTAGTCAGATTCATTTTTTTCATTTTAGGTTTTAGACA
AAGGGAATACAAAAGGCACAGCCGAGGAAGAAAAACCATCAAATATTACT
GTCGAACTTTCTAAAGAAACCTTAGACACTATGTTAGATGGTTTAGGCAA
AATTCGTGATCAATTAAATTCAGTTGTTAGTCGGTGATCAATCNAAACCT
TAGACACTATGTTAGACGGTTTAGGCAAAATTCGTGATCAATTAAATTCA
GTTGTTAGTCGGTGATCAATCTCTGAAACGATACTTAATGGATATAGTTG
TTTTGTTCAAATTATTAACACAAGGACCTACGTGGGTATCCTTTAAAGTA
ATTATGTAAATCAGGATTGATTGCAATTTAAATGCTAGCTAAAGAGAACC
CTGTACATAGCTGCGGGATGGAAATTATTACTTGATGATTTGCAATTGAT
TCCTTGTTGAGTAAATAAGTAAATAAAATAACAGACTCGAACCTACCTCC
AATGATCTTTAATAAATTAGTAATGATTCAATCTACTGGATAAAGCATGC
ACCTCTAATTTTATTATCTAAATTGATTTAAATTTTGGTAAATTTCAACA
TGTAGAGATTTATTAATGGTAATTTATTGATAAAAAGAATAACCAGAAAC
TTCATGTTTTTTTTTTGGTAATTTATTGTTATATATTTTTTTAATATCTA
AATTATAAGCACTTTACGCGATCCATTTTTATACCGAAAATGTTCTGATG
GACTACATTAAATTTATTCTCCTTTTCTGAAAATTTGATTCGAGTCTAGG
AACCAAAAATAGAGATATTTAACTCTTCAATGATTTCGGTCTCGTTTCAA
AGTTTGTTTTGAATTTTGTTTTGAAAAAAAATGTCAAACTTTTTCTTCAC
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007332-exon-sc0000075-1575043694:616864..616976 | TCONS_00007332-exon-sc0000075-1575043694:616864..616976 | Clytia hemisphaerica | exon |
| TCONS_00007332-exon-sc0000075-1575043694:616474..616577 | TCONS_00007332-exon-sc0000075-1575043694:616474..616577 | Clytia hemisphaerica | exon |
| TCONS_00007332-exon-sc0000075-1575043694:616131..616236 | TCONS_00007332-exon-sc0000075-1575043694:616131..616236 | Clytia hemisphaerica | exon |
| TCONS_00007332-exon-sc0000075-1575043694:615376..616052 | TCONS_00007332-exon-sc0000075-1575043694:615376..616052 | Clytia hemisphaerica | exon |
| TCONS_00007332-exon-sc0000075-1510915933:616864..616976 | TCONS_00007332-exon-sc0000075-1510915933:616864..616976 | Clytia hemisphaerica | exon |
| TCONS_00007332-exon-sc0000075-1510915933:616474..616577 | TCONS_00007332-exon-sc0000075-1510915933:616474..616577 | Clytia hemisphaerica | exon |
| TCONS_00007332-exon-sc0000075-1510915933:616131..616236 | TCONS_00007332-exon-sc0000075-1510915933:616131..616236 | Clytia hemisphaerica | exon |
| TCONS_00007332-exon-sc0000075-1510915933:615376..616052 | TCONS_00007332-exon-sc0000075-1510915933:615376..616052 | Clytia hemisphaerica | exon |
| TCONS_00007332-exon-sc0000075-1491911889:616864..616976 | TCONS_00007332-exon-sc0000075-1491911889:616864..616976 | Clytia hemisphaerica | exon |
| TCONS_00007332-exon-sc0000075-1491911889:616474..616577 | TCONS_00007332-exon-sc0000075-1491911889:616474..616577 | Clytia hemisphaerica | exon |
| TCONS_00007332-exon-sc0000075-1491911889:616131..616236 | TCONS_00007332-exon-sc0000075-1491911889:616131..616236 | Clytia hemisphaerica | exon |
| TCONS_00007332-exon-sc0000075-1491911889:615376..616052 | TCONS_00007332-exon-sc0000075-1491911889:615376..616052 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000075 | supercontig | sc0000075:615376..616976 - |
Blast
BLAST of TCONS_00007332 vs. Swiss-Prot (Human)
Match: COMD9 (COMM domain-containing protein 9 OS=Homo sapiens GN=COMMD9 PE=1 SV=2) HSP 1 Score: 94.7449 bits (234), Expect = 7.262e-23 Identity = 49/85 (57.65%), Postives = 66/85 (77.65%), Query Frame = 2
Query: 113 VSLPTLVDFDLRVDVISSSNQISRISVPRCLLQLQVLDKGNTKGTAEEEKPS--NITVELSKETLDTMLDGLGKIRDQLNSVVSR 361
+SLP LVD D RVD+ +SS+ ISR++VP CLLQ+++ + + G +KPS +TVELSKETLDTMLDGLG+IRDQL++V S+
Sbjct: 118 ISLPRLVDLDWRVDIKTSSDSISRMAVPTCLLQMKIQEDPSLCG----DKPSISAVTVELSKETLDTMLDGLGRIRDQLSAVASK 198
The following BLAST results are available for this feature:
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