TCONS_00007331 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007331
Unique NameTCONS_00007331
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length454

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007331 ID=TCONS_00007331|Name=TCONS_00007331|organism=Clytia hemisphaerica|type=transcript|length=454bp
GAATTGGGCAAATTGAAGTGAGGTTTGTTTTGCGGGTAATTGTTACAACT
CTGACAACGGtgtgacaaaaaaaatcaactagCGCCTTGTTGATGTGATG
AATTGGATATCTGGGGTTCAAATTGTTTTACTGCTTCATTGTTTAGGTTA
CTCTTCTGGCTGGAATGAAGAAATGGATTTATTTCGAGATTTATTTCTCA
CAAATGAAGGCTATACGTCAAAAGCTAGACCTGTCCTTGATAAAAGCAAA
CCAGTTATTGTCAAAATGAATATCGCTCTTGCTCAAGTTGTCGAGTTGAA
CGACAGAGATCAATCACTAACCACCAACATTTGGATTCGTCAGTTTTGGA
AGAATGAATTTTTAACGTGGAATCCATCAGACTATGCAAACATTACAGAA
TTGACAATCACTAAAAATTGGATTTGGACTCCAGACTTAGTTCTTTATAA
CAGG
Run BLAST on NCBI

protein sequence of TCONS_00007331-protein

>TCONS_00007331-protein ID=TCONS_00007331-protein|Name=TCONS_00007331-protein|organism=Clytia hemisphaerica|type=polypeptide|length=119bp
MNWISGVQIVLLLHCLGYSSGWNEEMDLFRDLFLTNEGYTSKARPVLDKS
KPVIVKMNIALAQVVELNDRDQSLTTNIWIRQFWKNEFLTWNPSDYANIT
ELTITKNWIWTPDLVLYNR
Run BLAST on NCBI

transcript from alignment at sc0000075:612268..614281-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007331 ID=TCONS_00007331|Name=TCONS_00007331|organism=Clytia hemisphaerica|type=transcript|length=2014bp|location=Sequence derived from alignment at sc0000075:612268..614281- (Clytia hemisphaerica)
GAATTGGGCAAATTGAAGTGAGGTTTGTTTTGCGGGTAATTGTTACAACT
CTGACAACGGTGTGACAAAAAAAATCAACTAGCGCCTTGTTGATGTGATG
AATTGGATATCTGGGGTTCAAATTGTTTTACTGCTTCATTGTTTAGGTGA
GTAACCATGATTGATTTGGTGATCACCGACCTAATCAAAAAATGTCTAAT
CAATCAAGCTAAGGTTTGTCAGTTTGCATTCATTCACCCCCTTTCTCGAT
TGTTTTGTAGTGAAAACTTAAGTCTTTGATATCTGAAAATGATTACCCTA
CTGTCATGATCTTGTTTCGGAAAACCCTGATTTTTTATTTTTGAGTTCAA
ACTCAACTCAAAACTCAGATTTGCAAACAAGCAACATGAAAAGAAGTCAT
CTTTTTCGCATATTTTTGGTTTTAGTATGTTTAGATAAAGGTAAACGACT
TTTTCGCTTGGTAATAAGCGTCGTTGAACGCCATTTAAGGTCTAACCATG
ATATAATAAAATTTATACATTAGCTAAGAGTTCTCTTTTAAGGTATTTTC
GAAGAAATAAAATAATTTTTTCATTTCTCACTATAGGTTACTCTTCTGGC
TGGAATGAAGAAATGGATTTATTTCGAGATTTATTTCTCACAAATGAAGG
CTATACGTCAAAAGCTAGACCTGTCCTTGATAAAAGCAAACCAGTTATTG
TCAAAATGAATATCGCTCTTGCTCAAGTTGTCGAGTTGGTAAGTTTCATT
TTCGTTTTGTTTACACTAGGAGTTTTACTAAGTTACTAAGGGCAACAAGG
CTTGCTATAAAACTAATTTCCAATAGACACGATAGCACATACTGGAAGTT
GATATAGATTAAATTTTCATTAGGACCATTGTAAAATGAGTCAGGCAATA
AAAATGTTTTTAAAGTTATTAAAATGACAACAACAGACTGACATAAAAAA
CTGTTGAGGTTTTATTGGTAATGATGAGCGATATCTTATCGATTTCTCTA
TAGAACGACAGAGATCAATCACTAACCACCAACATTTGGATTCGTCAGGT
AATTTGAAATCTTTTTAATTCGATTTAGTATTTCTTTTCCTTATTAGTAG
GGGGCCAAACCTTAGCATCTTTCGTGGAACTCACCGCATGTGATTGATTC
GAAAGTAGATAGGATTTTGAAACTTTTTCTTTAGAGGGGCCTGCGAATTA
TGCCTGGCAAAAGTTTTTATGACCAAAAAACTGACGTTGTGGGTAAAACT
CCTAACCCACAAAACAGACAAAAAATTGATAATTTTTCAAAGTTTACTTG
AACGCAAATGAATTCGCGGGCCCTCTCAAAAAAATCTCAAAATCCTACCT
ATCCTATCTAAGATGCTACGGATCATAATGAATGCCTCTACCTCAAGCAT
ATCTATCTTCTATCTTCTCTATCGTCAATGTTTTATAATACAAGTTCAAA
TACACATGAACTTTAAGGACATTATTTTAACATATCTAAAACCAGATTTT
TGGCGTCATTCGAGCCTGGTAATTCTTAGCTTCCAATTGGAAAATTTTCA
AAATTTCAATAATATAGGTTAAAATCAGGATATTTAGAGCAGAATAAGGG
ACCCTTTCTTTGAAGGCTTAAAAAATTTTAAAAATTAATAAACGGGGGTG
GGGGTTCTAATAAGGTCCGGGGGTTGGAAAATTAACAAGCGGGGGGGAGG
GCGTTTATTTGGATTCAAATTCCCTTTCAACACGGCTTTTGAGGCAAAGA
ATTATAACTTGTTTTTAACTCATGTCGAAGCTCAATATTTGGTTTCGCTA
GTTTTTGGGCTCAGTTATTAAAAATTTTCTTTTGGAAATGTGAGTTTTGG
TCTTCATCAACAGTTCTGTATTGTTTTCTTGTTTTCTTCATATTTTATTC
TAGTTTTGGAAGAATGAATTTTTAACGTGGAATCCATCAGACTATGCAAA
CATTACAGAATTGACAATCACTAAAAATTGGATTTGGACTCCAGACTTAG
TTCTTTATAACAGG

Coding sequence (CDS) from alignment at sc0000075:612268..614281-

>TCONS_00007331 ID=TCONS_00007331|Name=TCONS_00007331|organism=Clytia hemisphaerica|type=CDS|length=1428bp|location=Sequence derived from alignment at sc0000075:612268..614281- (Clytia hemisphaerica)
TTTTGGAAGAATGAATTTTTAACGTGGAATCCATCAGACTATGCAAACAT
TACAGAATTGACAATCACTAAAAATTGGATTTGGACTCCAGACTTAGTTC
TTTATAACAGGAACGACAGAGATCAATCACTAACCACCAACATTTGGATT
CGTCAGGTTACTCTTCTGGCTGGAATGAAGAAATGGATTTATTTCGAGAT
TTATTTCTCACAAATGAAGGCTATACGTCAAAAGCTAGACCTGTCCTTGA
TAAAAGCAAACCAGTTATTGTCAAAATGAATATCGCTCTTGCTCAAGTTG
TCGAGTTGATGAATTGGATATCTGGGGTTCAAATTGTTTTACTGCTTCAT
TGTTTAGTTTTGGAAGAATGAATTTTTAACGTGGAATCCATCAGACTATG
CAAACATTACAGAATTGACAATCACTAAAAATTGGATTTGGACTCCAGAC
TTAGTTCTTTATAACAGGAACGACAGAGATCAATCACTAACCACCAACAT
TTGGATTCGTCAGGTTACTCTTCTGGCTGGAATGAAGAAATGGATTTATT
TCGAGATTTATTTCTCACAAATGAAGGCTATACGTCAAAAGCTAGACCTG
TCCTTGATAAAAGCAAACCAGTTATTGTCAAAATGAATATCGCTCTTGCT
CAAGTTGTCGAGTTGATGAATTGGATATCTGGGGTTCAAATTGTTTTACT
GCTTCATTGTTTAGTTTTGGAAGAATGAATTTTTAACGTGGAATCCATCA
GACTATGCAAACATTACAGAATTGACAATCACTAAAAATTGGATTTGGAC
TCCAGACTTAGTTCTTTATAACAGGAACGACAGAGATCAATCACTAACCA
CCAACATTTGGATTCGTCAGGTTACTCTTCTGGCTGGAATGAAGAAATGG
ATTTATTTCGAGATTTATTTCTCACAAATGAAGGCTATACGTCAAAAGCT
AGACCTGTCCTTGATAAAAGCAAACCAGTTATTGTCAAAATGAATATCGC
TCTTGCTCAAGTTGTCGAGTTGATGAATTGGATATCTGGGGTTCAAATTG
TTTTACTGCTTCATTGTTTAGTTTTGGAAGAATGAATTTTTAACGTGGAA
TCCATCAGACTATGCAAACATTACAGAATTGACAATCACTAAAAATTGGA
TTTGGACTCCAGACTTAGTTCTTTATAACAGGAACGACAGAGATCAATCA
CTAACCACCAACATTTGGATTCGTCAGGTTACTCTTCTGGCTGGAATGAA
GAAATGGATTTATTTCGAGATTTATTTCTCACAAATGAAGGCTATACGTC
AAAAGCTAGACCTGTCCTTGATAAAAGCAAACCAGTTATTGTCAAAATGA
ATATCGCTCTTGCTCAAGTTGTCGAGTTGATGAATTGGATATCTGGGGTT
CAAATTGTTTTACTGCTTCATTGTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004110XLOC_004110Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007331-exon-sc0000075-1575043694:614136..614281TCONS_00007331-exon-sc0000075-1575043694:614136..614281Clytia hemisphaericaexon
TCONS_00007331-exon-sc0000075-1575043694:613544..613695TCONS_00007331-exon-sc0000075-1575043694:613544..613695Clytia hemisphaericaexon
TCONS_00007331-exon-sc0000075-1575043694:613234..613278TCONS_00007331-exon-sc0000075-1575043694:613234..613278Clytia hemisphaericaexon
TCONS_00007331-exon-sc0000075-1575043694:612268..612378TCONS_00007331-exon-sc0000075-1575043694:612268..612378Clytia hemisphaericaexon
TCONS_00007331-exon-sc0000075-1510915933:614136..614281TCONS_00007331-exon-sc0000075-1510915933:614136..614281Clytia hemisphaericaexon
TCONS_00007331-exon-sc0000075-1510915933:613544..613695TCONS_00007331-exon-sc0000075-1510915933:613544..613695Clytia hemisphaericaexon
TCONS_00007331-exon-sc0000075-1510915933:613234..613278TCONS_00007331-exon-sc0000075-1510915933:613234..613278Clytia hemisphaericaexon
TCONS_00007331-exon-sc0000075-1510915933:612268..612378TCONS_00007331-exon-sc0000075-1510915933:612268..612378Clytia hemisphaericaexon
TCONS_00007331-exon-sc0000075-1491911889:614136..614281TCONS_00007331-exon-sc0000075-1491911889:614136..614281Clytia hemisphaericaexon
TCONS_00007331-exon-sc0000075-1491911889:613544..613695TCONS_00007331-exon-sc0000075-1491911889:613544..613695Clytia hemisphaericaexon
TCONS_00007331-exon-sc0000075-1491911889:613234..613278TCONS_00007331-exon-sc0000075-1491911889:613234..613278Clytia hemisphaericaexon
TCONS_00007331-exon-sc0000075-1491911889:612268..612378TCONS_00007331-exon-sc0000075-1491911889:612268..612378Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007331-proteinTCONS_00007331-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000075supercontigsc0000075:612268..614281 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.289614	0.564839	0	0	0.781122	0.771566	0.558517	0.174292	0.366079	0.604596	0.880254	0.675085	1.15568	0.800123	1.06894	0.705931	3.04377	4.79107	2.309	0.8054	7.84043	5.32669	0.996198	2.11327	3.10946	3.4689	27.4012	18.0122	10.2864	8.18765
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002394Nicotinic_acetylcholine_rcpt
IPR006202Neur_chan_lig-bd
Vocabulary: Molecular Function
TermDefinition
GO:0022848acetylcholine-gated cation-selective channel activity
GO:0005216ion channel activity
GO:0005230extracellular ligand-gated ion channel activity
Vocabulary: Biological Process
TermDefinition
GO:0006811ion transport
Vocabulary: Cellular Component
TermDefinition
GO:0045211postsynaptic membrane
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0045211 postsynaptic membrane
molecular_function GO:0022848 acetylcholine-gated cation-selective channel activity
molecular_function GO:0005230 extracellular ligand-gated ion channel activity
molecular_function GO:0005216 ion channel activity
Blast
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BLAST of TCONS_00007331 vs. Swiss-Prot (Human)
Match: ACHA2 (Neuronal acetylcholine receptor subunit alpha-2 OS=Homo sapiens GN=CHRNA2 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 7.013e-22
Identity = 41/94 (43.62%), Postives = 64/94 (68.09%), Query Frame = 2 
Query:  170 EMDLFRDLFLTNEGYTSKARPVLDKSKPVIVKMNIALAQVVELNDRDQSLTTNIWIRQFWKNEFLTWNPSDYANITELTITKNWIWTPDLVLYN 451
            E  LF+ LF    GY   ARPV + S  VIV+  +++AQ++++++++Q +TTN+W++Q W +  L WNP+D+ NIT L +    IW PD+VLYN
Sbjct:   59 EDRLFKHLF---RGYNRWARPVPNTSDVVIVRFGLSIAQLIDVDEKNQMMTTNVWLKQEWSDYKLRWNPTDFGNITSLRVPSEMIWIPDIVLYN 149
The following BLAST results are available for this feature:
BLAST of TCONS_00007331 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ACHA27.013e-2243.62Neuronal acetylcholine receptor subunit alpha-2 OS... [more]
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