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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007329 ID=TCONS_00007329|Name=TCONS_00007329|organism=Clytia hemisphaerica|type=transcript|length=5564bpRun BLAST on NCBI protein sequence of TCONS_00007329-protein >TCONS_00007329-protein ID=TCONS_00007329-protein|Name=TCONS_00007329-protein|organism=Clytia hemisphaerica|type=polypeptide|length=946bp MGVIKGLFCSESAAGKECQNDKFCGEDEICVCNAKCESNRCIKGSREAEKRun BLAST on NCBI transcript from alignment at sc0000075:522134..600412- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007329 ID=TCONS_00007329|Name=TCONS_00007329|organism=Clytia hemisphaerica|type=transcript|length=78279bp|location=Sequence derived from alignment at sc0000075:522134..600412- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000075:522134..600412- >TCONS_00007329 ID=TCONS_00007329|Name=TCONS_00007329|organism=Clytia hemisphaerica|type=CDS|length=51138bp|location=Sequence derived from alignment at sc0000075:522134..600412- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00007329 vs. Swiss-Prot (Human)
Match: NOTC3 (Neurogenic locus notch homolog protein 3 OS=Homo sapiens GN=NOTCH3 PE=1 SV=2) HSP 1 Score: 154.066 bits (388), Expect = 3.876e-37 Identity = 206/802 (25.69%), Postives = 324/802 (40.40%), Query Frame = 3
Query: 459 NNGTCSQAQSNFTCICHDGWEGRLCE--IPKC-TLKCNHSKAQCNFRSPGKEQFCQCTIAGMTGASCESDINECNITETICHHGECENTPG-----SYKCHCDDFYTGPTCNDREDTCNTKSNKCHQNATCINEINSPEGYKCVCRNGYTGKYCDALVDN--------CAAANC-GNGQC----INKFNDYTCTCHDGYTGKNCETKI------KNESCPYDDCDRTQ----CDKRCNIPKCNYDAYLCTFNL-DPFKQCDIQECKNAINGT-CRSDCDNMNCLYDSGNC---IKPKKCS--LEEQCKKAYGDGVCHPLCNTVDCGFD-IDCISE-PNLIP-GSLVLEIDSTEGEFKAKKSQFEFELSRQLNSLVTVK-SVRTLNAGFKRKRRSISNNTSPRLE---------VTMKMDNSKCVS-----QCFSTEQ-AARFLALKSANDDXXXXXXXXXXXXXXSGEP--PITPSISPLWXXXXXXXXXXXXXXXXXXKTVKTR----FWKPEE-------TTGPGKRETPIGQEELQILDESR-DSKRQKLGFDHSEPFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTIDQQQHHDNPLHYAAHHGIIHILRTQ-------------MDYVDVNKRDNTGRTALHVATSTGNDDIFAHLIRNRSINPDIQDDEGETPLMVAVRMAGIEYVRQLVNLGSRTGLANKSGKTALHIAAMVDNYAAANILLAHSAKVDAQDNQMRTPLYLACTEDAYRTAALLVRH-CANKSAADVDDITPLMVAQRKANHDIIRLFEAN 2609
+NGTC F C C G+ G CE I +C + C+ + + + PG C C AG +G C++ ++ C ++ H G+C +PG ++ CHC + GP C +C + +C C +P G +C C G +G C + + CAAA C G C + F + C C G+TG CE + CP C + CD+ CN P C +D C+ ++ DP++QC+ +C N + C C + CLYD+ +C + + C+ E+ C + DG C CNT +CG+D +DC SE P L+ G LVL + E + F LS L + + + F R S + R E V +++DN C+ CF Q AA +L SA + + GEP P PS+ L + + + I V+ + R W PE +G R P+GQ+ L + + ++ +S ++ D + + GM + +D +Q + HH + +R D +DVN R G T L +A+ G + D DD + + + + Q LG+RT +++G+TALH+AA AA LL A +AQD+ RTPL+ A T DA +L+R+ + A D T L++A R A ++ A+
Sbjct: 1178 HNGTCVDLVGGFRCTCPPGYTGLRCEADINECRSGACHAAHTRDCLQDPGGGFRCLCH-AGFSGPRCQTVLSPCE-SQPCQHGGQCRPSPGPGGGLTFTCHCAQPFWGPRCERVARSC--RELQCPVGVPCQQ---TPRGPRCACPPGLSGPSCRSFPGSPPGASNASCAAAPCLHGGSCRPAPLAPF--FRCACAQGWTGPRCEAPAAAPEVSEEPRCPRAACQAKRGDQRCDRECNSPGCGWDGGDCSLSVGDPWRQCEALQCWRLFNNSRCDPACSSPACLYDNFDCHAGGRERTCNPVYEKYCADHFADGRCDQGCNTEECGWDGLDCASEVPALLARGVLVLTVLLPPEELLRSSADFLQRLSAILRTSLRFRLDAHGQAMVFPYHRPSPGSEPRARRELAPEVIGSVVMLEIDNRLCLQSPENDHCFPDAQSAADYLGALSAVE----RLDFPYPLRDVRGEPLEPPEPSVPLLPLLVAGAVLLLVILVLGVMVARRKREHSTLWFPEGFSLHKDVASGHKGRREPVGQDALGMKNMAKGESLMGEVATDWMD--------------TECPEAKRLKVEEPGMGAEEAVDCRQ-------WTQHHLVAADIRVAPAMALTPPQGDADADGMDVNVRGPDGFTPLMLASFCGG------ALEPMPTEEDEADDTSASIIS--------DLICQGAQLGART---DRTGETALHLAARYARADAAKRLLDAGADTNAQDHSGRTPLHTAVTADAQGVFQILIRNRSTDLDARMADGSTALILAARLAVEGMVEELIAS 1928 HSP 2 Score: 119.783 bits (299), Expect = 1.077e-26 Identity = 64/163 (39.26%), Postives = 93/163 (57.06%), Query Frame = 3
Query: 2115 VDVNKRDNTGRTALHVATSTGNDDIFAHLIRNRSINPDIQDDEGETPLMVAVRMAGIEYVRQLVNLGSRTGLANKSGKTALHIAAMVDNYAAANILLAHSAKVDAQDNQMRTPLYLACTEDAYRTAALLVRHCANKSAADVDDITPLMVAQRKANHDIIRLFE 2603
D N +D++GRT LH A + +F LIRNRS + D + +G T L++A R+A V +L+ + ++ GK+ALH AA V+N A LL + A D QD++ TPL+LA E +Y A LL+ H AN+ D D P VAQ + + DI+RL +
Sbjct: 1863 ADTNAQDHSGRTPLHTAVTADAQGVFQILIRNRSTDLDARMADGSTALILAARLAVEGMVEELIASHADVNAVDELGKSALHWAAAVNNVEATLALLKNGANKDMQDSKEETPLFLAAREGSYEAAKLLLDHFANREITDHLDRLPRDVAQERLHQDIVRLLD 2025 HSP 3 Score: 108.997 bits (271), Expect = 1.872e-23 Identity = 71/206 (34.47%), Postives = 97/206 (47.09%), Query Frame = 3
Query: 417 STNASSDACHPHPCN-NGTCSQAQSNFTCICHDGWEGRLCEI--PKCTLKCNHSKAQCNFRSPGKEQFCQCTIAGMTGASCESDINECNITETICHHGECENTPGSYKCHCDDFYTGPTCNDREDTCNTKSNKCHQNATCINEINSPEGYKCVCRNGYTGKYCDALVDNCAAANCGNGQCINKFNDYTCTCHDGYTGKNCETKIKN 1025
S + + DAC PC GTCS F C C G +GR CE+ P C H +C +PG+ C C G G C+ D++EC HG C N GS+ C C YTGP+C+ + C+ N C +C + + S + C C G+ G C VD C + CG G C + +TCTC GY G +CE + +
Sbjct: 730 SQSLARDACESQPCRAGGTCSSDGMGFHCTCPPGVQGRQCELLSPCTPNPCEHG-GRCE-SAPGQLPVCSCP-QGWQGPRCQQDVDECAGPAPCGPHGICTNLAGSFSCTCHGGYTGPSCDQDINDCDP--NPCLNGGSCQDGVGS---FSCSCLPGFAGPRCARDVDECLSNPCGPGTCTDHVASFTCTCPPGYGGFHCEQDLPD 927 HSP 4 Score: 101.679 bits (252), Expect = 3.206e-21 Identity = 70/203 (34.48%), Postives = 94/203 (46.31%), Query Frame = 3
Query: 435 DACHPHPC-NNGTCSQA----QSNFTCICHDGWEGRLCEIPKCTLK--CNHSKAQCNFRSPGKEQFCQCTIAGMTGASCESDINECNITETICHHGECENTPGSYKCHCDDFYTGPTCNDREDTCNTKSNKCHQNATCINEINSPEGYKCVCRNGYTGKYCDALVDNCAAANCGN-GQCINKFNDYTCTCHDGYTGKNCETKI 1019
D CH PC G C + + F+C C G+ G C +P L C H A+C+ P C C G G SC SD++EC + E H G C NTPGS++C C YTGP C + C + C TC + Y C C G+ G+ C+ VD+C C N G C++ N Y C C +TG+ C +
Sbjct: 80 DPCHSGPCAGRGVCQSSVVAGTARFSCRCPRGFRGPDCSLPDPCLSSPCAHG-ARCSV-GPDGRFLCSCP-PGYQGRSCRSDVDECRVGEPCRHGGTCLNTPGSFRCQCPAGYTGPLCENPAVPC--APSPCRNGGTCRQSGDL--TYDCACLPGFEGQNCEVNVDDCPGHRCLNGGTCVDGVNTYNCQCPPEWTGQFCTEDV 275 HSP 5 Score: 101.293 bits (251), Expect = 4.451e-21 Identity = 64/193 (33.16%), Postives = 99/193 (51.30%), Query Frame = 3
Query: 450 HPCNN-GTCSQAQSNFTCICHDGWEGRLCE--IPKCTLKCNHSKAQCNFRSPGKEQFCQCTIAGMTGASCESDINECNITETICHHGECENTPGSYKCHCDDFYTGPTCNDREDTCNTKSNKCHQNATCINEINSPEGYKCVCRNGYTGKYCDALVDNCAAANCGNGQCINKFNDYTCTCHDGYTGKNCETKI 1019
+PC + G C Q +F C C G+ G CE + +C ++A C R QF +AG TG CE DI+EC + + + G C++ + C C ++G TC D C S C A C+++ P+GY+C C G+ G CD VD+C+ C +G+C++ ++C C GYTG CE+++
Sbjct: 400 NPCEHLGRCVNTQGSFLCQCGRGYTGPRCETDVNECLSGPCRNQATCLDR---IGQFTCICMAGFTGTYCEVDIDECQSSPCV-NGGVCKDRVNGFSCTCPSGFSGSTCQLDVDEC--ASTPCRNGAKCVDQ---PDGYECRCAEGFEGTLCDRNVDDCSPDPCHHGRCVDGIASFSCACAPGYTGTRCESQV 583 HSP 6 Score: 92.0485 bits (227), Expect = 3.350e-18 Identity = 70/217 (32.26%), Postives = 89/217 (41.01%), Query Frame = 3
Query: 435 DACHPHPCNNGTCSQAQSNFTCICHDGWEGRLCEIPKCTLKCNHSKAQCNFRSPGKEQFCQ-------------CTIA-GMTGASCESDINECNITETICHHGECENTPGSYKCHCDDFYTGPTCNDREDTCNTKSNKCHQNATCINEINSPEGYKCVCRNGYTGKYCDALVDNCAAAN--------CGNGQCINKFNDYTCTCHDGYTGKNCETKI 1019
D C PC NG Q+ C+C GW GRLC+I +L C + AQ R EQ CQ C G TG+ CE +++ C + + H G C G Y C C Y G C D D C S C +CI+ + Y C C G G C+ D+C NG C++ + CTC GYTG CE I
Sbjct: 1002 DWCSRQPCQNGG-RCVQTGAYCLCPPGWSGRLCDIR--SLPCREAAAQIGVR---LEQLCQAGGQCVDEDSSHYCVCPEGRTGSHCEQEVDPC-LAQPCQHGGTCRGYMGGYMCECLPGYNGDNCEDDVDEC--ASQPCQHGGSCIDLVAR---YLCSCPPGTLGVLCEINEDDCGPGPPLDSGPRCLHNGTCVDLVGGFRCTCPPGYTGLRCEADI 1206 HSP 7 Score: 87.4261 bits (215), Expect = 7.104e-17 Identity = 59/208 (28.37%), Postives = 95/208 (45.67%), Query Frame = 3
Query: 435 DACHPHPCNNGTCSQAQSNFTCICHDGWEGRLCE--IPKC-TLKCNHSKAQCNFRSPGKEQFCQCTIAGMTGASCESDINECNITETICHHGECENTPGSYKCHCDDFYTGPTCNDREDTCNTKSNKCHQNATCINEINSPEGYKCVCRNGYTGKYCDALVDNCAAANCGNGQCINKFNDYTCTCHDGYTGKNCETKIKNESCPYDDC 1049
D C P PC++G C ++F+C C G+ G CE + +C + C H + + C+C +G TG +CE +I++C C G C + Y C C +TGP CN + C S+ C + +C++ N G++C+C G C CA C +G C + + C C G++G C + ++C C
Sbjct: 547 DDCSPDPCHHGRCVDGIASFSCACAPGYTGTRCESQVDECRSQPCRHGGKCLDLV---DKYLCRCP-SGTTGVNCEVNIDDC--ASNPCTFGVCRDGINRYDCVCQPGFTGPLCNVEINEC--ASSPCGEGGSCVDGEN---GFRCLCPPGSLPPLCLPPSHPCAHEPCSHGICYDAPGGFRCVCEPGWSGPRCSQSLARDACESQPC 743 The following BLAST results are available for this feature:
BLAST of TCONS_00007329 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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