TCONS_00007319 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007319
Unique NameTCONS_00007319
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2047

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007319 ID=TCONS_00007319|Name=TCONS_00007319|organism=Clytia hemisphaerica|type=transcript|length=2047bp
ACCTGACATTGGAAACCAACCGGAAACCAAAGGTGCAGATTCAACATCAT
TTCAGGACATTTCAATGAGCCAATGGGATCCAGACGTTTTGAGTGAGCTA
CCTGAACACATACAACAAGAATTGAAACAGCAAATGAAAATACACAAAAC
ATTAACAACAAGCAGCGTTCCGTCCAAAATCAATACAAGTCCATCAACAT
CGAAGACAAGCAAAGCAAACACTAACAGTCCTTCCGCCAAATCAAGAAGT
AATGCTAAAATCTATGTTAATCAAAACCAtaaaaacatcttcaaaaaggG
TCGTGGACGgccaaagaaaattgataagaTTTTTACAGATTCGAATAAGT
ATGGAACTATTCTTGATACTATGAGTGCAACAAGACTTGTGAAATCGACT
AAAGGTCCACAAGAAGTAGTTGAGGAAATACAAACTAACACTGCTTCACA
AAGACCAGGGTTCCTATCTCCAGAAAGAGTTGACATGGATGTTTTAAATG
AACTACCTGAGGAAATTCGTAATCAGATTTGGAACGATTTGAAAAAGACG
TCAGTCAATTTCAAGAaaccaaaatcaaatcatcagCCTGTTGCCTCGTC
TTTGTCAACTTTACCGGGCAGATGTTCAACTACTTCTACCTCCACCACCA
TTGGAAATACTAAAAATGTTAATCAACTTCCATCTTCTTCGAGTTCTAAA
CATGGCCACTCTCCTGCCAAGCAGAACTCTATTCAGAAAGATACGTTCAG
CTCTTCATCACTGAATAAAGATGTCAGTAACCATTTATCCGTTGAACAGG
CTTCAGGTTTAGTGAAGGCAAGCTCTACAGGGAGTTCTGCAGCTTCCCCT
ATAAGAATAAACACCGGGTCAGCCACGTTGATACAGAGACAAGTTATTCC
TGATATTGTGTCACCCTCACAGCTGGATGCTTCGTTTTTAAGAGCACTTC
CTGAAAAAATGAGAGCAGAAATATTGGAAGAATCGAGAAACGTCAAAAAG
AAAAGACCGTCAGATGACATTATATCTATAGGGAAAAGAACTAAAACAGT
AGCTTCTTGTGATGAAAGATTACCGGATCTGGAAATCGCTGAATCAGCAG
ATTCCAACGACAAACAAAAAACGTGTGTTGAGGATATGATGCTTTTATCT
CCTTCAGCTATGGATCAAAGTGTTTTAGAAGCCTTACCAAATACGATTAG
AAATGAGATTTTAAACGAATCAAAACAGCGGAAAATATCACGTGATCAAT
TCACTATCCAATCAAAACAACAGACAGCAAAATTAATTTCTACCGACAAT
AGAATAGCAAAGGAAAACATTTTCCCGATAAATGATGATTTAGAGAGGCG
TGCTGAGAAGTTGATTCAAGTTTTACCAGCTTTCCATGGAGCCAAAACGT
ATGAAGAAGTGAAAAGTTTGTTACGTGAATGGACCACTGAATGCGACGAT
GTCCCTGACACAGAAGATGTTGAGGAAGTCGAACGCTATTTCCACGAATT
GTTGAACAGTTATAACATGGAAACACTattccttttattgaaattcaccA
AAAGattgtttacgtcaaaacctttaaaatggCATGAAGCTTTCAATGAA
CTACATTCGAAAACACAAGAGACAATCAAATTAATGTATAATGGAAAGCT
ACCCGTTGACCCGTTTAATCTCGATTGATTGAGATAGGTTTTTTCAAGCT
TGTACATATTTACGATTcaattttatattaaaaaaacgaTATTGCGGTGT
GCAGTTATGTTATGAAAGaGCGATCAACGCATCCTTGAGAATTACTCCGA
AGCCGTTTGTCAAATCACCTTCACCAGTTGTCAAATCAAATGGTGCTGAT
GGCACATTTAAATCACGAGACTGGCGCGTGAATGATCCTTCTCAAAAAAT
CACCGTCATCCGAGAAGTTTGTGGACCAAACCAAAATCGATTATCAACAC
CATTAGGTCCACAGCAGCCAAAATCCAAACCGCAAATTCCAAAGCCCGTA
CAAATGAAAGGCTACCTTTTTGTACCCGCAGAATACGTCAAATATAT
Run BLAST on NCBI

transcript from alignment at sc0000075:426456..432942-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007319 ID=TCONS_00007319|Name=TCONS_00007319|organism=Clytia hemisphaerica|type=transcript|length=6487bp|location=Sequence derived from alignment at sc0000075:426456..432942- (Clytia hemisphaerica)
ACCTGACATTGGAAACCAACCGGAAACCAAAGGTGCAGATTCAACATCAT
TTCAGGTAAGACAGACTGTTCTATTTTTTTCTTGCCACTCTCATCTCAGC
CTAATCAAATTGTTCCTAAAATTGAGGTTTTGTAAGCTATTGACCACTTC
ATATCAACATAACAAACACCTAAGTTAGCTAAGTTTTAAAAGCGACTTGG
ACTTTGATAATTATATCAATCGTCCTCTTCCATTTTTACAGGACATTTCA
ATGAGCCAATGGGATCCAGACGTTTTGAGTGAGCTACCTGAACACATACA
ACAAGAATTGAAACAGCAAATGAAAATACACAAAACATTAACAACAAGCA
GCGTTCCGTCCAAAATCAATACAAGTCCATCAACATCGAAGACAAGCAAA
GCAAACACTAACAGTCCTTCCGCCAAATCAAGAAGTAATGCTAAAATCTA
TGTTAATCAAAACCATAAAAACATCTTCAAAAAGGGTCGTGGACGGCCAA
AGAAAATTGATAAGATTTTTACAGATTCGAATAAGTATGGAACTATTCTT
GATACTATGAGTGCAACAAGACTTGTGAAATCGACTAAAGGTCCACAAGA
AGTAGTTGAGGAAATACAAACTAACACTGCTTCACAAAGACCAGGGTTCC
TATCTCCAGAAAGAGTTGACATGGATGTTTTAAATGAACTACCTGAGGAA
ATTCGTAATCAGATTTGGAACGATTTGAAAAAGACGTCAGTCAATTTCAA
GAAACCAAAATCAAATCATCAGCCTGTTGCCTCGTCTTTGTCAACTTTAC
CGGGCAGATGTTCAACTACTTCTACCTCCACCACCATTGGAAATACTAAA
AATGTTAATCAACTTCCATCTTCTTCGAGTTCTAAACATGGCCACTCTCC
TGCCAAGCAGAACTCTATTCAGAAAGATACGTTCAGCTCTTCATCACTGA
ATAAAGATGTCAGTAACCATTTATCCGTTGAACAGGCTTCAGGTTTAGTG
AAGGCAAGCTCTACAGGGAGTTCTGCAGCTTCCCCTATAAGAATAAACAC
CGGGTCAGCCACGTTGATACAGAGACAAGTTATTCCTGATATTGTGTCAC
CCTCACAGCTGGATGCTTCGTTTTTAAGAGCACTTCCTGAAAAAATGAGA
GCAGAAATATTGGAAGAATCGAGAAACGTCAAAAAGAAAAGACCGTCAGA
TGACATTATATCTATAGGGAAAAGAACTAAAACAGTAGCTTCTTGTGATG
AAAGATTACCGGATCTGGAAATCGCTGAATCAGCAGATTCCAACGACAAA
CAAAAAACGTGTGTTGAGGATATGATGCTTTTATCTCCTTCAGCTATGGA
TCAAAGTGTTTTAGAAGCCTTACCAAATACGATTAGAAATGAGATTTTAA
ACGAATCAAAACAGCGGAAAATATCACGTGATCAATTCACTATCCAATCA
AAACAACAGACAGCAAAATTAATTTCTACCGACAATAGAATAGCAAAGGA
AAACATTTTCCCGATAAATGATGATTTAGAGAGGCGTGCTGAGAAGTTGA
TTCAAGTTTTACCAGCTTTCCATGGAGCCAAAACGTATGAAGAAGTGAAA
AGTTTGTTACGTGAATGGACCACTGAATGCGACGGTAAACCCTCTTTTGA
ATTGTGTTGAATGTTGCTAAAGTTATTCCCAGGGTCCCCAACTAACAATG
TGAAATTACAGTCCCTGAAATCGAACATCTATAGCTCAAATGTCTTCTTA
ACTCAAACAAATTTGTGCCCCCCCCCCCGTGTTATTTTTTCGAAATTTTC
ATACATTGGAGTCTCCATACATCGAACATGAACGGAAAACAAAAATGTGT
TCGAGTAAAGGAAATTTCGAGTTATGGAGTAAGGTTTATAATGCATTGTT
TTACTGAAGGGACCATAAAGCTTTTTCCAGTTAAGGAGACATTCGAGTTT
TAGAGGTTCCAATTAAATAGACTCCACTGTATTATTACAATTGCCGGGCC
GGACGGCGTTTTCAGGTGGTCAAATTGGCCGTTATCCATCTCTTCCGACC
GGAGAACAAGCTTGCAAAATATCTAAGATGTGGCACCAAATATTACTTTT
TGGAACTCTATAGACTAATTGTCTTTAAAATGTCTCTATATTTCGAACCT
CTCTCATTCGAATCTTTAAGAAATTCAAAAAAATTATTGGTCCCTTAAAG
ATCGTGGAAAGTCAATTTATGAGTAGGTGTCCATTCATTTCCTCTGTCTT
CTTTTGTACAGATGTCCCTGACACAGAAGATGTTGAGGAAGTCGAACGCT
ATTTCCACGAATTGTTGAACAGTTATAACATGGAAACACTATTCCTTTTA
TTGAAATTCACCAAAAGGTTTGTGGATTTGCACTAATCTTTACTTACAAA
GTATCCAAAGGGACCGTCCACATAGTACGTACGCACTAAGGGGGGGCCTT
ATCGAAAGCGTATGCTTGCGTACAGGGGGAGGAGAGGGGTCAAAGGAAAA
TGTACGTACGCAGAGAAAATTTTTTTCATAGCCCTTTTTTGCTTGTTTTT
TTTGTCGAGTTTTATGCTTCTTATACGCATCAAGGAAAAGAAAAAGTTTC
ATGATAAACATTGAGTTTTATGTATGAAACCAAACGATTTGAATTCGAAA
TTTTCTTCAACCAAGGGGGGGATACCCATTTGCATACAGGGGGAGGGGGT
ACTCGATTTTCGACATTTTAGTGCGTACGTACTATGTGGACGGCCCCAAA
GTTCGATTGTAAACTTGCTGACGGAGTCTGCCAAGACCTGCCGTAAACTT
AAGATGACAATCTTAGACTTGTTTTCGCCTTAAAAATTTACCATAATTTC
TTGAACCCAGACATGTTGAAGAAAAAATGATTTCTCCAGCAACAAATTCA
AAAAAAGAATACTATTCCATCACCTAGCAACAGTGTCATATGACGAATCT
GGCTACCTGTTTGGAGACTTTCTTCCTTTAGGATAGCATGCTAGACGTAG
AAAATAATCAAAAAATGTAGTTTATAATACAAACTGATGTTATCACATAA
TAATTATCGTATTATCATATAACACCCATGTTACTGTATTACACGGATTA
TAAACGACTCGACAGTCTATTCTTAGGCCGCTTTCACGCAACATCTTGTA
TACCGTAGTACACATTTACTTATTCGATATTTTTCAGATTGTTTACGTCA
AAACCTTTAAAATGGCATGAAGCTTTCAATGAACTACATTCGAAAACACA
AGAGACAATCAAATTAATGTATAATGGAAAGCTACCCGTTGACCCGTTTA
ATCTCGATTGATTGAGATAGGTTTTTTCAAGCTTGTACATATTTACGATT
CAATTTTATATTAAAAAAACGATATTGCGGTGTGCAGTTATGTTATGAAA
GGTATTATTTTTCACTGTTTAATAACTCATTTTTGTGGGTAGCCATTCCC
GGGAAGGGTAGTAAAACAACAAACTAGCGAGGACAAGCATGAAAATGACG
TGTGCATTCTGCGATCTATTTATAACTCTACGGACCAAAATCGGTTTGGG
GACTAAACCAATTAGGCCGTAATATTGTCGTAACTTTTCTTGCATATTTC
GAATTAGTAAGTTTTGGAATTAGTCGAAAGTTTTCAGAATATTTTTGAAT
TTTAGTCTGCTTCATGAGTCACTAATTTCGCAAATCTTTGAAACTACGTG
GTTCATTTTCGAATTCATTGTGCTTATAAAATAAATCGTATTTTAACATA
TCTAGGGAGAGAGTCTCCTATTAATCAATTCCGGTAGTGTCGTAAAGAAA
CTTGGAAAACTTTTTCTTATATTTTGATATGTTATTTTCTGTTTTAGCCT
TTATAAAAATGGCTTGAAAAATTATAAAGTCATAAAGCTAATAAATTTGA
ATATATGAGAGGATCTCCGTCCTCAATAATAATTCAGATACAAAAGCTTT
AGCAATTTAAGCTTAGAATGGTAAAATTATTATTTAGATCTTCGATTTCG
AATAAAAACTGAATCTAGTTTCTTGAGACAAAGATCATTGACCCCCCTCC
AAGATAAACATATGAAAATCAGAGAAAAATATAATTTATACATCTGTCAG
GCTGTTTTTAGATGAGTAAATTGAATGAAGAGTTAGTGGCTTGAGTCTGG
AGCAGTTTTGTTTTTTCCTTGGTTAAGACAGGCATTCCAATTTTCAGCTG
GGTCAGCCACATTTCTAGTCCATAATGGGAGCATTTATCTCGAAAATTGA
AAGTGGTGGCTGGTTTCCATGCCTCTGTGGTGACGCAATCATCTTTTTTG
TTGTCAAGACATTGGTTACACGTTTCACTGGATTGTACTCAATGGCAACA
AGCTTGACAATAAGCATTTCCTCCGAGACATTGGACGGAGTAACTTGGGT
ATCAAAAATATTGTAGTTTCCATCAGCTTTTCTATAGCATACTGGTGGTG
TTGTGCCGGTGATGTCGGGAACTTTCAAACTGCTGACAACTAGAATGAAA
GATGACATTTCTATAGATTGATGGTTGAAGGATAGTTGACTGTCAGCTGA
TCAAAGGTTTATAAACAGTAGTAAAAGGGCTTTGGTGGAATTAGTTTAAA
AACAATCGAAGACTTCGAAAGGAAAATGACATTGAAAGCTAATGACGTCG
GTTTCTTTGTATTATGGAGAAAATATTTGACGTCAGATTTTATTTAAAAG
TTTGATTAAAATTCAGCGAAAGCTATGGACAAGAAACAGTTTGAATTTTA
GTTAGTTGGTTATTAGCCGCGTTTTGTTCAGTTCTTATAAGAAAATATTC
TTAAGAAATGGATACCATGACATTAGCCAATATTGAGTTGCAGAAGTCGA
AGCAAAATATTGCTCGCCTCTCAAAGGAAATAGAAATTTTGAAAAATAAA
TGTAAATTCGCCAGCAATGATTGCTTGGTTAAAGAATCAAAGATTCGCAA
ATACAAAAAGGAAAACGTGGATTTGCGCGTTAAACTTGCAAAGGAGAAGT
AGGTTCTTTATTTTGTTTACTTCTTTAGCCTTTAAAATAATAAGCCTTTC
ATGATTCATTGTTGTGGATGAAGAAGAAATAAGAACAAAATTCTTATTAT
GACTTTCAACTTTGATCCCTATTTCGTGGTTGGTTGTTCTTATTATAATT
TGGCATTTATAAATCCATTTTTTCTTCACATTTTGGAAAAATGAAAAGGA
TCTAGCTTATTTAACCCAACATGTAATCTCATTATTTTTATTTAAGAGCG
ATCAACGCATCCTTGAGAATTACTCCGAAGCCGTTTGTCAAATCACCTTC
ACCGTAAGAATTATTCATAAAATACCTTTGCACGCATTGTTGATTGTTCC
GAGTAAATAGTTTGTCATGGTTAATTTTTACTGGCGCTATACCTTCTCAT
GGAAAATAAAGAGATTTTGGGTACAAGTTTTTCATTTTCAGTTTAAACAA
TCTCTTTATTTTTTACAGAGTTGTCAAATCAAATGGTGCTGATGGCACAT
TTAAATCACGAGACTGGCGCGTGAATGATCCTTCTCAGTAAGTTTCAACG
GAAAATTTTTAGATTAATGATACGGCCCTTGGAATAACTAATAATGCAAC
CTCGTTCCCTGCGTATTATCAGCTTTTTGATGCTTACTGATAGCGCTAGA
TAATATTCTCTGGCGTCCATAAGTAACGTAAATAAAGCCTGGGATACACG
GGGACGAGGTTGCTAATTATAATTATCGCTTAATGTTAATTCTAACAAGT
TAAAAATTACCTTACAAACAATTAAACACCCATTTCTAAATTTCAACACA
CCCCCAACACACATCCACATATGTTGAATTCTAACGATTGGAATTCGTTT
TCTAGAAAAATCACCGTCATCCGAGAAGTTTGTGGACCAAACCAAAATCG
ATTATCAACACCATTAGGTCCACAGCAGCCAAAATCCAAACCGCAAATTC
CGTGAGTAAAATCTAATTTTCAATGACATAAGTTTTCTTTCTTTTTTGAA
ATTTGATTTGTGTATTTTTCAGAATCTTTATTGAATCAAATATTCCCCCT
ATTTCGAAACCGGAAACGCCCTGAATCAAAAATTTTTTAAAGACAGTTTT
GCATGCACCACTTTAAGGGCGTTTTTTTCTATCTAAGCGTCACTGGGGAC
GAATCAGCTGTTTTAAAATTGACGTAATGTCAAATAAGATAACATATACA
TGGATGCATATTTGGGACAAGATGGAGTTTTTACAAGCTCTTATTTGATT
TGGTTGGTCGTTAACTAGTAATAAAACAATTTTGTTACTTTTTCTATAAA
GAACGCGTCATTTTTATTACTTCAAATGACCAATTATTAAAGTATCTTAT
AAAAACTCCATCTCATTTGGCATATTTTGAATATCCAATGTTGCTACCTA
CTTTGAACGATGCTTTAATATCATTTCTAGAAAGCCCGTACAAATGAAAG
GCTACCTTTTTGTACCCGCAGAATACGTCAAATATAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004105XLOC_004105Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007319-exon-sc0000075-1575043694:432888..432942TCONS_00007319-exon-sc0000075-1575043694:432888..432942Clytia hemisphaericaexon
TCONS_00007319-exon-sc0000075-1575043694:431309..432701TCONS_00007319-exon-sc0000075-1575043694:431309..432701Clytia hemisphaericaexon
TCONS_00007319-exon-sc0000075-1575043694:430576..430681TCONS_00007319-exon-sc0000075-1575043694:430576..430681Clytia hemisphaericaexon
TCONS_00007319-exon-sc0000075-1575043694:429542..429755TCONS_00007319-exon-sc0000075-1575043694:429542..429755Clytia hemisphaericaexon
TCONS_00007319-exon-sc0000075-1575043694:427640..427696TCONS_00007319-exon-sc0000075-1575043694:427640..427696Clytia hemisphaericaexon
TCONS_00007319-exon-sc0000075-1575043694:427406..427474TCONS_00007319-exon-sc0000075-1575043694:427406..427474Clytia hemisphaericaexon
TCONS_00007319-exon-sc0000075-1575043694:426992..427087TCONS_00007319-exon-sc0000075-1575043694:426992..427087Clytia hemisphaericaexon
TCONS_00007319-exon-sc0000075-1575043694:426456..426512TCONS_00007319-exon-sc0000075-1575043694:426456..426512Clytia hemisphaericaexon
TCONS_00007319-exon-sc0000075-1510915933:432888..432942TCONS_00007319-exon-sc0000075-1510915933:432888..432942Clytia hemisphaericaexon
TCONS_00007319-exon-sc0000075-1510915933:431309..432701TCONS_00007319-exon-sc0000075-1510915933:431309..432701Clytia hemisphaericaexon
TCONS_00007319-exon-sc0000075-1510915933:430576..430681TCONS_00007319-exon-sc0000075-1510915933:430576..430681Clytia hemisphaericaexon
TCONS_00007319-exon-sc0000075-1510915933:429542..429755TCONS_00007319-exon-sc0000075-1510915933:429542..429755Clytia hemisphaericaexon
TCONS_00007319-exon-sc0000075-1510915933:427640..427696TCONS_00007319-exon-sc0000075-1510915933:427640..427696Clytia hemisphaericaexon
TCONS_00007319-exon-sc0000075-1510915933:427406..427474TCONS_00007319-exon-sc0000075-1510915933:427406..427474Clytia hemisphaericaexon
TCONS_00007319-exon-sc0000075-1510915933:426992..427087TCONS_00007319-exon-sc0000075-1510915933:426992..427087Clytia hemisphaericaexon
TCONS_00007319-exon-sc0000075-1510915933:426456..426512TCONS_00007319-exon-sc0000075-1510915933:426456..426512Clytia hemisphaericaexon
TCONS_00007319-exon-sc0000075-1491911889:432888..432942TCONS_00007319-exon-sc0000075-1491911889:432888..432942Clytia hemisphaericaexon
TCONS_00007319-exon-sc0000075-1491911889:431309..432701TCONS_00007319-exon-sc0000075-1491911889:431309..432701Clytia hemisphaericaexon
TCONS_00007319-exon-sc0000075-1491911889:430576..430681TCONS_00007319-exon-sc0000075-1491911889:430576..430681Clytia hemisphaericaexon
TCONS_00007319-exon-sc0000075-1491911889:429542..429755TCONS_00007319-exon-sc0000075-1491911889:429542..429755Clytia hemisphaericaexon
TCONS_00007319-exon-sc0000075-1491911889:427640..427696TCONS_00007319-exon-sc0000075-1491911889:427640..427696Clytia hemisphaericaexon
TCONS_00007319-exon-sc0000075-1491911889:427406..427474TCONS_00007319-exon-sc0000075-1491911889:427406..427474Clytia hemisphaericaexon
TCONS_00007319-exon-sc0000075-1491911889:426992..427087TCONS_00007319-exon-sc0000075-1491911889:426992..427087Clytia hemisphaericaexon
TCONS_00007319-exon-sc0000075-1491911889:426456..426512TCONS_00007319-exon-sc0000075-1491911889:426456..426512Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000075supercontigsc0000075:426456..432942 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.5889	10.0821	5.0076	4.21243	3.53242	2.31099	3.70828	4.24205	2.7883	3.48013	4.55158	3.54933	4.78412	6.05345	4.26546	5.40222	3.18753	4.1387	3.98335	2.20377	3.67796	4.13325	11.1919	9.83646	10.9054	10.4121	1.32928	2.73212	6.12794	8.66824
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007319 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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