TCONS_00007317 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007317
Unique NameTCONS_00007317
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1457

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007317 ID=TCONS_00007317|Name=TCONS_00007317|organism=Clytia hemisphaerica|type=transcript|length=1457bp
ATTAATTCGTATTTGAGATAAATAATTGCTCTTGCTTTGGTTTTGAATTT
CCAGTTTttaaatctgattggttgaaaatgaaCGCAAAAATCTTGCTCGT
CCTTTTTGGTCTAGTGGCCGCTGCTGCAGGATGTGGCCGACAATATTTCC
CTATGTCACGTGTCATCGGTGGTAAGAACGCCAACCGCAACTCGTGGCCA
TGGCAAGTTGTTTTCCTTGAAAATGGTAGACCTGGTTGCGGCGGTTCCAT
TATTAGCCCAAATTGGATTGTCACTGCTGCCCATTGTGTTGTTACACCTC
AAGATCAAAGAAAATCAGCATGGGGTATCTCTGTAAGAGTTGGCAAACAT
GATTTACGAAGACGTGATCAATTTGAAGTTGAACATCGTGCATCACAAAT
TTTTGTGCATCCAGGATTTTCATACAGACATTTCCAAAACGATGTCGCTG
TCATCCGATTGGCTACTCCGATCCGATTTAACCAAGCTGTTCAACCTATC
TGTTTACCAAGCCGACCAGCCAGAGTTGGACAACCATGTTACATTACCGG
TTGGGGCAGACAACACCGTTCCGCTCGAGGAATGCACCACACTTTACAAC
AAGCCTCAATGCCAGTTGTCGATCCAAGAACATGTTCCAATGCTATGAGG
AGAGTCGCCCCATTCCCCATTGGTCCACACAGCATCTGTTCCGGATATGG
TCGTGCCCGTATTAGCGGTTGTCAAGGAGATAGCGGTGGTCCATTCGTTT
GCAACAACGGCCGAAACTGGGAACTCCATGGTGCAGTCAGCTGGGGATCA
AGAGATTGCAGTGCACGGGCTAACCAATACACTGTCTATGCAAATATCTA
CAACCTGAAGAGATGGATTTCTCAAACAACTGGGGTTTATTGAAAACATg
ttctttttgaaaactattgtaaattttgaaacattacaCCAATACACTTT
GTTTGGTAGGCACcagagaaatttttgttgaatcCCAACTTTTCTATTCA
CGACACTTTGATTTCCTCTGatctattttttttgcttttattctCTGAAT
CATATTTCGACTATAAAGTTTGCTTAAACTTTAGGAAAGTTTGCTTAAAC
TTTAGGAAGAATCTTTATATACTCAACCATCTGATACGACTGACCTCTTT
ATAAAATTATggaatatcttttgatggatttttgtgGAAATTGGTACCCT
GAGAGCACACTCTAAAGActacatgttgtttttttataagcaagtgtatg
ccccttggtcaggctcgtgtatgcttaaaaaagcatccaggcatagctta
tgcttattatatgcgtatgaatcatgcttatgattcaccccgagccaagc
tTTTAGTGAAattaatttcagaaattttgtaaaaatttgttcaaatttat
tgggagcagtggaatgtagctagccatGGAATGTCtctttttacttgacc
tctacca
Run BLAST on NCBI

protein sequence of TCONS_00007317-protein

>TCONS_00007317-protein ID=TCONS_00007317-protein|Name=TCONS_00007317-protein|organism=Clytia hemisphaerica|type=polypeptide|length=271bp
MNAKILLVLFGLVAAAAGCGRQYFPMSRVIGGKNANRNSWPWQVVFLENG
RPGCGGSIISPNWIVTAAHCVVTPQDQRKSAWGISVRVGKHDLRRRDQFE
VEHRASQIFVHPGFSYRHFQNDVAVIRLATPIRFNQAVQPICLPSRPARV
GQPCYITGWGRQHRSARGMHHTLQQASMPVVDPRTCSNAMRRVAPFPIGP
HSICSGYGRARISGCQGDSGGPFVCNNGRNWELHGAVSWGSRDCSARANQ
YTVYANIYNLKRWISQTTGVY
Run BLAST on NCBI

transcript from alignment at sc0000075:415104..418266-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007317 ID=TCONS_00007317|Name=TCONS_00007317|organism=Clytia hemisphaerica|type=transcript|length=3163bp|location=Sequence derived from alignment at sc0000075:415104..418266- (Clytia hemisphaerica)
ATTAATTCGTATTTGAGATAAATAATTGCTCTTGCTTTGGTTTTGAATTT CCAGTTTTTAAATCTGATTGGTTGAAAATGAACGCAAAAATCTTGCTCGT CCTTTTTGGTCTAGTGGCCGCTGCTGCAGGTAAAAACGCAACATTAATTC AACTCATGGCTACTTTAAAACGCCACGATTCAACTTCCTTAACTATTTTA GTAATTATTAGTATAAATGTTAAACGATACGAATCTTCAGGGTTAGATTT ATCCATTCGAACTCTAACAGAGTGCACATGTAAAATCGTGTACAAGCTGC TTTAAAAGCGATGTCTCTATTATATACCTTTAAAAAAGGTCTTTAAGGCG AAGAATCCAAGAGTATTTAAAATTTAAAAAGTAAAATTTATGAGAAAGAA AGGAAGGATCGGTTTTGTACACTGCCTAGTAGTAGATATTTATTAAAAAA GGGATCTCTTTGGAGCATGTTTGGAGATTGGCCGTCGAAATGCAAATAAA ATAAATTCACGAGGTCTACTTCTATGTATGTGTTTTTTAGGATGTGGCCG ACAATATTTCCCTATGTCACGTGTCATCGGTGGTAAGAACGCCAACCGCA ACTCGTGGCCATGGCAAGTTGTTTTCCTTGAAAATGGTAGACCTGGTTGC GGCGGTTCCATTATTAGCCCAAATTGGATTGTCACTGCTGCCCATTGTGT TGTTACACCTCAAGATCAAAGAAAATCAGCATGGGGTATCTCTGTAAGGT ATGTTTCATTAAAAATTTAAACAGTACGAGCAGTTTCGCTAGATACACGG GGGATAGATAAGAAAGTGCAAGAAAATGTGCCACTAATTAGTGTGCCATG TGTGCCTCTACAAATCCAAGATTTAAAAAAAAATTACATACTGTGCTTTT TTGAAGAAAAAAGAACGACAAATTTTAAAAGCAAACTTTGGTTGGTATTT TTTTCTCTATTCAAGATTGCTTTTATTTCGGCGGATAGCACTTATTCATC ATCGTCATCTTTTGACCGCGGTCGGGATGAAACTTGTAAACGAATCTCCG TCTATAAGGTTATCTGACCTTTCCCAACATGTCATAATCAAAAACATTCT TTCTCATTCCAATCGGCAGAGTTGGCAAACATGATTTACGAAGACGTGAT CAATTTGAAGTTGAACATCGTGCATCACAAATTTTTGTGCATCCAGGATT TTCATACAGACATTTCCAAAACGATGTCGCTGTCATCCGATTGGCTACTC CGATCCGATTTAACCAAGCTGTTCAACCTATCTGTTTACCAAGCCGACCA GCCAGAGTTGGACAACCATGTTACATTACCGGTAAGTGAGTGAGGAATGT GATTGAGCGGTTTAAACCTCTTAGCTTTATATACACCCAGGAGGTAGTTT CTCAATCCCGGTCAATGTTTGATCTGGAAATTTTTGAGTTCTTTTGTAAA GTAGTCAGCTAATGGTACCACTTCTCGATGTGGGTGTAAATGTTCCTAGA TCATTCGTTCAACTTTTCCTTGAATACTTTTGGTGTAGCTTGGTGTACCG TATTCTTTACTGAGGGTTTACTTCATACACTTAGGTTGGGGCAGACAACA CCGTTCCGCTCGAGGAATGCACCACACTTTACAACAAGCCTCAATGCCAG TTGTCGATCCAAGAACATGTTCCAATGCTATGAGGGTAAGTACGAAATAA TAAAGCTTACTCAGAAATAATCAAATACACTTCCTGTTTCTTATAAATAT TCAAATCCTCTGTTTAAAAGTTTTTTTATCGGAATCAAGTGTTGCGAGCA TCACTGATTAACTTACTCTGAGATTCAACCTGTAACGAGTGATGACGTAT GTCTCTGTTGAAAGAATCACATAAAGAGAGAGAGCTGTGACTGCCATGCT TACTTTTGTATTCGCTGAATTATAATCATATAGTGTGTCCCAAAAAAAGC GGACACATTTTTTCTTAAAGTAAAATCCTGGGTTTAGAATAATTGAAGTA AGATTAAAATTCACTGTTTGATCGATAGATATTCAATTCCCAAGATGATT GAATAGGTTTTTGAGATTGAAATATTGAGTATACAAGTCATAAAATTTCG TATAAATTATGAGGATTTCATTTTATATAAGAATTTGTCCGCTTTTTTTG GGACACACTGTACACTCATGGTACAAATCAAGGGCTGAAAACTGTATACA AAATCATTGCAAAACTAGGTCTAAAGCTAATGCAATGACTTATAGTCAAT CAATCAATTTTGTACCAAGTGAAGAGAAAGAGAAAAAGGTCGGGTGTAAA GCTGAAATAACCTTGAGATTTGGCATAAAATTATTCTCCTATCTACATAT TCATAGAGAGTCGCCCCATTCCCCATTGGTCCACACAGCATCTGTTCCGG ATATGGTCGTGCCCGTATTAGCGGTTGTCAAGGAGATAGCGGTGGTCCAT TCGTTTGCAACAACGGCCGAAACTGGGAACTCCATGGTGCAGTCAGCTGG GGATCAAGAGATTGCAGTGCACGGGCTAACCAATACACTGTCTATGCAAA TATCTACAACCTGAAGAGATGGATTTCTCAAACAACTGGGGTTTATTGAA AACATGTTCTTTTTGAAAACTATTGTAAATTTTGAAACATTACACCAATA CACTTTGTTTGGTAGGCACCAGAGAAATTTTTGTTGAATCCCAACTTTTC TATTCACGACACTTTGATTTCCTCTGATCTATTTTTTTTGCTTTTATTCT CTGAATCATATTTCGACTATAAAGTTTGCTTAAACTTTAGGAAAGTTTGC TTAAACTTTAGGAAGAATCTTTATATACTCAACCATCTGATACGACTGAC CTCTTTATAAAATTATGGAATATCTTTTGATGGATTTTTGTGGAAATTGG TACCCTGAGAGCACACTCTAAAGACTACATGTTGTTTTTTTATAAGCAAG TGTATGCCCCTTGGTCAGGCTCGTGTATGCTTAAAAAAGCATCCAGGCAT AGCTTATGCTTATTATATGCGTATGAATCATGCTTATGATTCACCCCGAG CCAAGCTTTTAGTGAAATTAATTTCAGAAATTTTGTAAAAATTTGTTCAA ATTTATTGGGAGCAGTGGAATGTAGCTAGCCATGGAATGTCTCTTTTTAC TTGACCTCTACCA

Coding sequence (CDS) from alignment at sc0000075:415104..418266-

>TCONS_00007317 ID=TCONS_00007317|Name=TCONS_00007317|organism=Clytia hemisphaerica|type=CDS|length=4080bp|location=Sequence derived from alignment at sc0000075:415104..418266- (Clytia hemisphaerica)
AGAGTCGCCCCATTCCCCATTGGTCCACACAGCATCTGTTCCGGATATGG
TCGTGCCCGTATTAGCGGTTGTCAAGGAGATAGCGGTGGTCCATTCGTTT
GCAACAACGGCCGAAACTGGGAACTCCATGGTGCAGTCAGCTGGGGATCA
AGAGATTGCAGTGCACGGGCTAACCAATACACTGTCTATGCAAATATCTA
CAACCTGAAGAGATGGATTTCTCAAACAACTGGGGTTTATTGAGTTGGGG
CAGACAACACCGTTCCGCTCGAGGAATGCACCACACTTTACAACAAGCCT
CAATGCCAGTTGTCGATCCAAGAACATGTTCCAATGCTATGAGGAGTTGG
CAAACATGATTTACGAAGACGTGATCAATTTGAAGTTGAACATCGTGCAT
CACAAATTTTTGTGCATCCAGGATTTTCATACAGACATTTCCAAAACGAT
GTCGCTGTCATCCGATTGGCTACTCCGATCCGATTTAACCAAGCTGTTCA
ACCTATCTGTTTACCAAGCCGACCAGCCAGAGTTGGACAACCATGTTACA
TTACCGGATGTGGCCGACAATATTTCCCTATGTCACGTGTCATCGGTGGT
AAGAACGCCAACCGCAACTCGTGGCCATGGCAAGTTGTTTTCCTTGAAAA
TGGTAGACCTGGTTGCGGCGGTTCCATTATTAGCCCAAATTGGATTGTCA
CTGCTGCCCATTGTGTTGTTACACCTCAAGATCAAAGAAAATCAGCATGG
GGTATCTCTGTAAGATGAACGCAAAAATCTTGCTCGTCCTTTTTGGTCTA
GTGGCCGCTGCTGCAGAGAGTCGCCCCATTCCCCATTGGTCCACACAGCA
TCTGTTCCGGATATGGTCGTGCCCGTATTAGCGGTTGTCAAGGAGATAGC
GGTGGTCCATTCGTTTGCAACAACGGCCGAAACTGGGAACTCCATGGTGC
AGTCAGCTGGGGATCAAGAGATTGCAGTGCACGGGCTAACCAATACACTG
TCTATGCAAATATCTACAACCTGAAGAGATGGATTTCTCAAACAACTGGG
GTTTATTGAGTTGGGGCAGACAACACCGTTCCGCTCGAGGAATGCACCAC
ACTTTACAACAAGCCTCAATGCCAGTTGTCGATCCAAGAACATGTTCCAA
TGCTATGAGGAGTTGGCAAACATGATTTACGAAGACGTGATCAATTTGAA
GTTGAACATCGTGCATCACAAATTTTTGTGCATCCAGGATTTTCATACAG
ACATTTCCAAAACGATGTCGCTGTCATCCGATTGGCTACTCCGATCCGAT
TTAACCAAGCTGTTCAACCTATCTGTTTACCAAGCCGACCAGCCAGAGTT
GGACAACCATGTTACATTACCGGATGTGGCCGACAATATTTCCCTATGTC
ACGTGTCATCGGTGGTAAGAACGCCAACCGCAACTCGTGGCCATGGCAAG
TTGTTTTCCTTGAAAATGGTAGACCTGGTTGCGGCGGTTCCATTATTAGC
CCAAATTGGATTGTCACTGCTGCCCATTGTGTTGTTACACCTCAAGATCA
AAGAAAATCAGCATGGGGTATCTCTGTAAGATGAACGCAAAAATCTTGCT
CGTCCTTTTTGGTCTAGTGGCCGCTGCTGCAGAGAGTCGCCCCATTCCCC
ATTGGTCCACACAGCATCTGTTCCGGATATGGTCGTGCCCGTATTAGCGG
TTGTCAAGGAGATAGCGGTGGTCCATTCGTTTGCAACAACGGCCGAAACT
GGGAACTCCATGGTGCAGTCAGCTGGGGATCAAGAGATTGCAGTGCACGG
GCTAACCAATACACTGTCTATGCAAATATCTACAACCTGAAGAGATGGAT
TTCTCAAACAACTGGGGTTTATTGAGTTGGGGCAGACAACACCGTTCCGC
TCGAGGAATGCACCACACTTTACAACAAGCCTCAATGCCAGTTGTCGATC
CAAGAACATGTTCCAATGCTATGAGGAGTTGGCAAACATGATTTACGAAG
ACGTGATCAATTTGAAGTTGAACATCGTGCATCACAAATTTTTGTGCATC
CAGGATTTTCATACAGACATTTCCAAAACGATGTCGCTGTCATCCGATTG
GCTACTCCGATCCGATTTAACCAAGCTGTTCAACCTATCTGTTTACCAAG
CCGACCAGCCAGAGTTGGACAACCATGTTACATTACCGGATGTGGCCGAC
AATATTTCCCTATGTCACGTGTCATCGGTGGTAAGAACGCCAACCGCAAC
TCGTGGCCATGGCAAGTTGTTTTCCTTGAAAATGGTAGACCTGGTTGCGG
CGGTTCCATTATTAGCCCAAATTGGATTGTCACTGCTGCCCATTGTGTTG
TTACACCTCAAGATCAAAGAAAATCAGCATGGGGTATCTCTGTAAGATGA
ACGCAAAAATCTTGCTCGTCCTTTTTGGTCTAGTGGCCGCTGCTGCAGAG
AGTCGCCCCATTCCCCATTGGTCCACACAGCATCTGTTCCGGATATGGTC
GTGCCCGTATTAGCGGTTGTCAAGGAGATAGCGGTGGTCCATTCGTTTGC
AACAACGGCCGAAACTGGGAACTCCATGGTGCAGTCAGCTGGGGATCAAG
AGATTGCAGTGCACGGGCTAACCAATACACTGTCTATGCAAATATCTACA
ACCTGAAGAGATGGATTTCTCAAACAACTGGGGTTTATTGAGTTGGGGCA
GACAACACCGTTCCGCTCGAGGAATGCACCACACTTTACAACAAGCCTCA
ATGCCAGTTGTCGATCCAAGAACATGTTCCAATGCTATGAGGAGTTGGCA
AACATGATTTACGAAGACGTGATCAATTTGAAGTTGAACATCGTGCATCA
CAAATTTTTGTGCATCCAGGATTTTCATACAGACATTTCCAAAACGATGT
CGCTGTCATCCGATTGGCTACTCCGATCCGATTTAACCAAGCTGTTCAAC
CTATCTGTTTACCAAGCCGACCAGCCAGAGTTGGACAACCATGTTACATT
ACCGGATGTGGCCGACAATATTTCCCTATGTCACGTGTCATCGGTGGTAA
GAACGCCAACCGCAACTCGTGGCCATGGCAAGTTGTTTTCCTTGAAAATG
GTAGACCTGGTTGCGGCGGTTCCATTATTAGCCCAAATTGGATTGTCACT
GCTGCCCATTGTGTTGTTACACCTCAAGATCAAAGAAAATCAGCATGGGG
TATCTCTGTAAGATGAACGCAAAAATCTTGCTCGTCCTTTTTGGTCTAGT
GGCCGCTGCTGCAGAGAGTCGCCCCATTCCCCATTGGTCCACACAGCATC
TGTTCCGGATATGGTCGTGCCCGTATTAGCGGTTGTCAAGGAGATAGCGG
TGGTCCATTCGTTTGCAACAACGGCCGAAACTGGGAACTCCATGGTGCAG
TCAGCTGGGGATCAAGAGATTGCAGTGCACGGGCTAACCAATACACTGTC
TATGCAAATATCTACAACCTGAAGAGATGGATTTCTCAAACAACTGGGGT
TTATTGAGTTGGGGCAGACAACACCGTTCCGCTCGAGGAATGCACCACAC
TTTACAACAAGCCTCAATGCCAGTTGTCGATCCAAGAACATGTTCCAATG
CTATGAGGAGTTGGCAAACATGATTTACGAAGACGTGATCAATTTGAAGT
TGAACATCGTGCATCACAAATTTTTGTGCATCCAGGATTTTCATACAGAC
ATTTCCAAAACGATGTCGCTGTCATCCGATTGGCTACTCCGATCCGATTT
AACCAAGCTGTTCAACCTATCTGTTTACCAAGCCGACCAGCCAGAGTTGG
ACAACCATGTTACATTACCGGATGTGGCCGACAATATTTCCCTATGTCAC
GTGTCATCGGTGGTAAGAACGCCAACCGCAACTCGTGGCCATGGCAAGTT
GTTTTCCTTGAAAATGGTAGACCTGGTTGCGGCGGTTCCATTATTAGCCC
AAATTGGATTGTCACTGCTGCCCATTGTGTTGTTACACCTCAAGATCAAA
GAAAATCAGCATGGGGTATCTCTGTAAGATGAACGCAAAAATCTTGCTCG
TCCTTTTTGGTCTAGTGGCCGCTGCTGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004104XLOC_004104Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007317-exon-sc0000075-1575043694:418138..418266TCONS_00007317-exon-sc0000075-1575043694:418138..418266Clytia hemisphaericaexon
TCONS_00007317-exon-sc0000075-1575043694:417519..417726TCONS_00007317-exon-sc0000075-1575043694:417519..417726Clytia hemisphaericaexon
TCONS_00007317-exon-sc0000075-1575043694:416936..417147TCONS_00007317-exon-sc0000075-1575043694:416936..417147Clytia hemisphaericaexon
TCONS_00007317-exon-sc0000075-1575043694:416582..416682TCONS_00007317-exon-sc0000075-1575043694:416582..416682Clytia hemisphaericaexon
TCONS_00007317-exon-sc0000075-1575043694:415104..415910TCONS_00007317-exon-sc0000075-1575043694:415104..415910Clytia hemisphaericaexon
TCONS_00007317-exon-sc0000075-1510915933:418138..418266TCONS_00007317-exon-sc0000075-1510915933:418138..418266Clytia hemisphaericaexon
TCONS_00007317-exon-sc0000075-1510915933:417519..417726TCONS_00007317-exon-sc0000075-1510915933:417519..417726Clytia hemisphaericaexon
TCONS_00007317-exon-sc0000075-1510915933:416936..417147TCONS_00007317-exon-sc0000075-1510915933:416936..417147Clytia hemisphaericaexon
TCONS_00007317-exon-sc0000075-1510915933:416582..416682TCONS_00007317-exon-sc0000075-1510915933:416582..416682Clytia hemisphaericaexon
TCONS_00007317-exon-sc0000075-1510915933:415104..415910TCONS_00007317-exon-sc0000075-1510915933:415104..415910Clytia hemisphaericaexon
TCONS_00007317-exon-sc0000075-1491911889:418138..418266TCONS_00007317-exon-sc0000075-1491911889:418138..418266Clytia hemisphaericaexon
TCONS_00007317-exon-sc0000075-1491911889:417519..417726TCONS_00007317-exon-sc0000075-1491911889:417519..417726Clytia hemisphaericaexon
TCONS_00007317-exon-sc0000075-1491911889:416936..417147TCONS_00007317-exon-sc0000075-1491911889:416936..417147Clytia hemisphaericaexon
TCONS_00007317-exon-sc0000075-1491911889:416582..416682TCONS_00007317-exon-sc0000075-1491911889:416582..416682Clytia hemisphaericaexon
TCONS_00007317-exon-sc0000075-1491911889:415104..415910TCONS_00007317-exon-sc0000075-1491911889:415104..415910Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007317-proteinTCONS_00007317-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000075supercontigsc0000075:415104..418266 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0860333 0.0280502 0.166024 0.226582 0.115216 0.0910707 0.293093 0.44563 0.0963164 0.119164 0.231582 0.152401 74.3591 77.2813 0.734209 1.44337 4.2345 5.45671 400.363 392.961 34.6956 43.2766 42.5274 54.2415 102.898 108.524 0.0784191 0 0.159154 0.129994
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001314Peptidase_S1A
IPR001254Trypsin_dom
IPR033116TRYPSIN_SER
IPR018114TRYPSIN_HIS
IPR009003Peptidase_S1_PA
Vocabulary: Molecular Function
TermDefinition
GO:0004252serine-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004252 serine-type endopeptidase activity
Blast
BLAST of TCONS_00007317 vs. Swiss-Prot (Human)
Match: CTRB2 (Chymotrypsinogen B2 OS=Homo sapiens GN=CTRB2 PE=2 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 1.983e-43
Identity = 91/244 (37.30%), Postives = 127/244 (52.05%), Query Frame = 3
Query:  153 MSRVIGGKNANRNSWPWQVVFLE-NGRPGCGGSIISPNWIVTAAHCVVTPQDQRKSAWGISVRVGKHDLRRRDQFEVEHRASQIFVHPGFSYRHFQNDVAVIRLATPIRFNQAVQPICLPSRPAR--VGQPCYITGWGRQHRSARGMHHTLQQASMPVVDPRTCSNAMRRVAPFPIGPHSICSGYGRARISGCQGDSGGPFVCNNGRNWELHGAVSWGSRDCSARANQYTVYANIYNLKRWISQ 875
            +SR++ G++A   SWPWQV   +  G   CGGS+IS +W+VTAAHC V   D         V  G+ D    ++     + +++F +P FS     ND+ +++LATP RF+Q V  +CLPS       G  C  TGWG+   +A      LQQA++P++    C  +  R     I    IC+G   + +S C GDSGGP VC     W L G VSWGSR CS       VYA +  L  W+ +
Sbjct:   31 LSRIVNGEDAVPGSWPWQVSLQDKTGFHFCGGSLISEDWVVTAAHCGVRTSDV--------VVAGEFDQGSDEENIQVLKIAKVFKNPKFSILTVNNDITLLKLATPARFSQTVSAVCLPSADDDFPAGTLCATTGWGKTKYNANKTPDKLQQAALPLLSNAECKKSWGR----RITDVMICAG--ASGVSSCMGDSGGPLVCQKDGAWTLVGIVSWGSRTCS--TTTPAVYARVAKLIPWVQK 258          
The following BLAST results are available for this feature:
BLAST of TCONS_00007317 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CTRB21.983e-4337.30Chymotrypsinogen B2 OS=Homo sapiens GN=CTRB2 PE=2 ... [more]
back to top