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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007313 ID=TCONS_00007313|Name=TCONS_00007313|organism=Clytia hemisphaerica|type=transcript|length=2229bp AGAAActataaaaatgtgaaaatttgcACGAAGAAATTTCATACATTGCA CTCTAGCAATCAGATAAGCATCAAAGCAAGTAAAGAAGAAGATCTTTATC TTTTCTAAGCAAACGAAACCAACTTTTTTAAAGCTGtgcttttgaagatt ttaaacaCTAATTCAAAATGACGGCTTCACCAGTGATTGTCAGCCAACGT GCTAAAGAACGTGATTACCTTCTTGCGTTGAACGATCGCTTCCAAAATTA TGTATCACGCGTGAGAACAATGCGTGAACAAGGTAAACAAATCGAGAACA ACACGTTCATCGCTCACACTCAAgctttggaaaatgaactttttgaagtt aaaagtatctatgaaaaagaattggaaacatgcCGAGGACAACTCGACTC CATGACTTCTGAAAGAAACGCATATCAACTGGAAGCAAGCAAGAAAGGAG CTTTGGCAACGGAATACCAAGACAAATACAATAACGAACTGACCACTCGC AAGAAGTTGGAGAATGCTTTAGCAGATGCACATCGATTGCTAAGCGAGAA AGACTCGCTCATCCAAGAACTCAGAATCACAATTGCACAACATCAAAACG CACATTTGGATACTACCAAGGAACGTGATGCACTCCAAAGTACTCTCAAC GCCGTTCAAACGCTTTGCGATTCCGAATCGAAAGCCAGAGCTGACTTGGA AGCATCCGTACAAAAACTTTCAGACCAACTCACTTTTGAACGACAACTCC ACGATAAGGCATTAATGGAATTGAACAACAAATTGTCAGCAGCCGAACGC GCCATCTCAATCGCCGATGAGAAACTACGTGAACACGATATCGTTGATGA TAACTTGGCACAAACCATCGCTAAGATGCGAATGCAAACACAAGCTGAAT TCAGACGCTTCCAAGACGAATCAGAGGCCGCCTACCAAGCATCATTGTCA CAAATCAAAGGACAACTTGATGCTGAAAGTAAAACATTGGCACAATCCAA CGAAGAGAACATCCACTTGAAAGCCATCATTGAAGAGATGAACGCAAAGA TTGGAAAACTCGACAGCCGATGCAATTCCGTTGAAGAACAAAACAGATCA TTGATTCACACTTTGGAATGTGAGCGACAACAAGCACAAAACACCATCAA AGAACTTGAACATAAATTACGTGAGATGCAAGAGCACTTGAACGCGAAAA TCCGTGAACTCAACGTCGCGTACAATGCACAAATCCCATTGGATCTTGAA ATCGAAGCTTTCGCCAACTTATTGGACGCTGAAGAAAAACGATTGAGCGT TGCATTGGCAAATCCACCAAGTGAATTGGTTCAAACAGCCCGTGGCGACT TAGTCTCCAGCCGAGGCCACTACACCGGAGTTCGATCAATGCCGGGCAGT CCTCGAAAACCAGTCAGCGGTATCAACAACAGTCCAACCAACTTCTCAGC AAGACCAAAATCAGTTCCAATTAATGAAGACACCAAAGAACTTCCAAGGT CGGATTCACCAGGCAAACCAGGATCACCGGGCGCTTACTATCTCCCTGGA ATCGGAGATAACTCGAGCAgAATCTTCAAGAACCCACGTGGTAACTACGG TACAACTGCCACGCCGCAAACACGTGTTTTCTACAACaagaaataaattt cataaaattgatcATCAAATATAATGATAAATTTAAATGACTAAAAATAA GATCTTAGACTATTATCAAAACGATTAAATTTTCGGAGAGAACCCTGGCT AATTGGAAGTGAATAGACACAAAAGGCAACTGAAAGAAGAGAAAGTGTTG ATGGAGATCTAGATCTGCTCTGGTAACTAAAATGTTAGTACCAAAGAGCT AGGCTGGAGCAATGAtcctttatttaattattttaatttatttaaacTTA AATGATTTTAACCCTTAACTCACACACAGAAGTTGGGAATTGTAAAGATT TAGTAAAATAGTATAGTtaataaaaatccaaaatattAATGTTTGTAAAG ATATCAGCATcaatttgaataattttgaaaatttctttaaagttgcactt tttatgatgattttaaacaatttttgatactGAAATAAATCATCTTAAAA TAAATTAACTCAACTCAACTTATGATTtcaacttaaaggttttattttta cataagtgtttccgtttcatatcagacacatatttcatatcaggacagtg tcttgctattgttatattatgctgattta Run BLAST on NCBI transcript from alignment at sc0000075:400162..406058- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007313 ID=TCONS_00007313|Name=TCONS_00007313|organism=Clytia hemisphaerica|type=transcript|length=5897bp|location=Sequence derived from alignment at sc0000075:400162..406058- (Clytia hemisphaerica) AGAAACTATAAAAATGTGAAAATTTGCACGAAGAAATTTCATACATTGCA
CTCTAGCAATCAGATAAGCATCAAAGCAAGTAAAGAAGAAGATCTTTATC
TTTTCTAAGCAAACGAAACCAACTTTTTTAAAGCTGTGCTTTTGAAGATT
TTAAACAGTAAGTACTAACATATATTTCTTTCATTTTTACCTAAAAGCCT
GGAAAGGGGTCAAGGAAGAGGAACAGGGTGAGCACCTTTTCTAAGACTAT
TTCAACTCTGCTTTTACATAATAAAAAAATTGAGTAAATTCTTTGTGTAA
CATGTCAAGGGAACAAAATATCAGAAAGTTTTTATTTAATTTGATTGAAA
TTGATATACCATTTTGCTTTAAGGGTAATCTCAGAACAAAGAACAAAAGA
AAAATTATAAGATAGTTAAACAATTTTGATTGCATAGTAACCATAGTTAG
TAACAGAATGTTTGACATTGAGACAAATTTATCATAACAAATATGGTAGC
TGTAAACAGTGGCGCATAAGGGATGATAGTGAGACCGCTTGGTTGAGTTA
GAAAAGCGACTATTCTAAATTTCACAAATTTTATATATTCAACAGCTAAT
TCAAAATGACGGCTTCACCAGTGATTGTCAGCCAACGTGCTAAAGAACGT
GATTACCTTCTTGCGTTGAACGATCGCTTCCAAAATTATGTATCACGCGT
GAGAACAATGCGTGAACAAGGTAAACAAATCGAGAACAACACGTTCATCG
CTCACACTCAAGCTTTGGAAAATGAACTTTTTGAAGTTAAAAGTATCTAT
GAAAAAGAATTGGAAACATGCCGAGGACAACTCGACTCCATGACTTCTGA
AAGAAACGCATATCAACTGGAAGCAAGCAAGAAAGGAGCTTTGGCAACGG
AATACCAAGACAAGTAAGTTTGAACCCTCTTTTTTTCGATTTTCTTATTT
CCTTTTTTAAGGTGTTGAATTTTTCTTTGAAGATACCGTAGCACTCTCGA
TACTGAAGTTCTTAGTGACATTCGTGGAGTGAATCGAGTATGTGCTCGTT
TTTTTTACGTGGTTTTAAAAGTGTAAAAAGTTCNGGAGTGAATCGAGTGT
GTGCTCGTTTTTTTTACGTGGTTTTAAAAGTGTAAAAAGTTCGAATAATA
AAGTGTGACACGCCATGTATCAAAAACAAAACAATCGTCACCATTCAAGT
AAATTTAGACACAGTCCCAACTCTGCAGGAAATCATTAAAAATTGATCAA
TGAAAAATGTATCAAAAATTTTTTTTGGTGCAAAATTCCTGAATAATTGA
TTAACTGTCAATTTTCCGTTAAAATAATGAATATTTGATGAGATTCGAAA
AAATTGAAAAAAATTAATCAGTTTCCATGGGATTTTTAGGGAGCAGTTAT
TCTCATCCCAAAACAAGTTAGAAAATCGAAGGAAAAACAACATGACTAAT
TTTTTTGTGTCATAATTTGAAAATATTGTGCATAATTTATTCATTGCTTA
AAGGCGACATCTCATTTCTTAGACAGCGGCTCTCTTTTTAAGTCTAGTGC
ATTGCACGAATCTAGAACTTTTCCGATTGTCCGACAGTTACAAGATATTT
GACATATCCCATAGCAATGGCATAACATAAGTAATAGTTATCGGAATAGT
TTCGAGTACAATATGAGAAATATTTTACGAATTCCGAGATTTTTCCATAC
AATATTTTCCGAGCCTTTAGGCGAGGAAAATATACGGAAAAAATCCGGAA
CAAATGAAATATTTCCATATCGTAAGAGCAAATGTCTGATAACTGGTTTA
CCGGTGACCCAAAAAATGCGCTTTTTGTGTTGGAAAAAATCGCAGGGCAC
TTTTGTAGTATAGTGACGTTAGATTGCTACTACCGCTACAATGCAACAAC
ATCTTTTCGTCAATTTATATTTTTACATGTAAAATACAAGATATATTGTA
CTCTTTTTAACCAATCATATTGCTGATATTTTTTGGATCGCCGATAATAT
GCATTATACCGTAATATTTGAATTTCAAGATAATATGTCAAAAAACTTAC
CTCGCGATCAGGGGTCTGAGAGTGTTTAACTTAACTTTTATATCTCTAAC
CTTCCCAAAGAAACATAGATATGACGTGGTAACAACACGCCTCGATTCCC
TAACTGCTCCTCTTTTACTCAAAAACGTATAATATCAAATCTATAGTATC
ATAATACCGTAATATCCATTTCTCTAGATACAATAACGAACTGACCACTC
GCAAGAAGTTGGAGAATGCTTTAGCAGATGCACATCGATTGCTAAGCGAG
AAAGACTCGCTCATCCAAGAACTCAGAATCACAATTGCACAACATCAAAA
CGCACATTTGGATACTACCAAGGAACGTGATGCACTCCAAAGTACTCTCA
ACGCCGTTCAAACGCTTTGCGATTCCGAATCGAAAGCCAGAGCTGACTTG
GAAGCATCCGTACAAAAACTTTCAGACCAACTCACTTTTGAACGACAACT
CCACGATAAGGTAACGACTTAAAAACTGTTGCTTAACCTATGAGACATAT
ATGACAAGGACAATAAACTTCCGTTTTGATCCTTTTTTAGTCGTATTTCG
ATTTTATGATATCCCTACTTTCTCATATTGTCAAAACTTCATGCAACGTA
ATTTAATAGTTTCAGTTTTATTTTCTCTGGTAAATTCTAAATACACGGGA
TGATAACATGAATGTTTTCGATTTTCTCTAGGCATTAATGGAATTGAACA
ACAAATTGTCAGCAGCCGAACGCGCCATCTCAATCGCCGATGAGAAACTA
CGTGAACACGATATCGTTGATGATAACTTGGCACAAACCATCGCTAAGAT
GCGAATGCAAACACAAGCTGAATTCAGACGCTTCCAAGACGAATCAGAGG
CCGCCTACCAAGCATCATTGTCACAAATCAAAGGACAACTTGATGCTGAA
AGTAAAACATTGGCACAATCCAACGAAGAGAACATCCACTTGAAAGCCAT
CATTGAAGAGATGAACGCAAAGATTGGAAAACTCGACAGCCGATGCAATT
CCGTTGAAGAACAAAACAGATCATTGATTCACACTTTGGAATGTGAGCGA
CAACAAGCACAAAACACCATCAAAGAACTTGAACATAAATTACGTGAGAT
GCAAGAGCACTTGAACGCGAAAATCCGTGAACTCAACGTCGCGTACAATG
CACAAATCCCATTGGATCTCGAAATCGAAGCTTTCGCCAACTTATTGGAC
GCTGAAGAAAAACGGTAAGACATTCTCACCATCAATGTTAAGGAAGCCTA
GCAATAGAATCAAAATACAGCAAATTACTTTTCAGTCAAAAAATCGCTCG
CTCTAAAAACCTTTTAATCAAGCATATCTAATTCTCGACAAACAAAACGA
ATCTTCAAACCCAANCTGACCACTCGCAAGAAGTTGGAGAATGCTTTAGC
AGATGCACATCGATTGCTAAGCGAGAAAGACTCGCTCATCCAAGAACTCA
GAATCACAATTGCACAACATCAAAACGCACATTTGGATACTACCAAGGAA
CGTGATGCACTCCAAAGTACTCTCAACGCCGTTCAAACGCTTTGCGATTC
CGAATCGAAAGCCAGAGCTGACTTGGAAGCATCCGTACAAAAACTTTCAG
ACCAACTCACTTTTGAACGACAACTCCACGATAAGGTAACGACTTAAAAA
CTGTTGCTTAACCTATGAGACATATATGACAAGGACAATAAACTTCCGTT
TTGATCCTTTTTTAGTCGTATTTCGATTTTATGATATCCCTACTTTCTCA
TATTGTCAAAACTTCATGCAACGTAATTTAATAGTTTCAGTTTTATTTTC
TCTGGTAAATTCTAAATACACGGGATGATAACATGAATGTTTTCGATTTT
CTCTAGGCATTAATGGAATTGAACAACAAATTGTCAGCAGCCGAACGCGC
CATCTCAATCGCCGATGAGAAACTACGTGAACACGATATCGTTGATGATA
ACTTGGCACAAACCATCGCTAAGATGCGAATGCAAACACAAGCTGAATTC
AGACGCTTCCAAGACGAATCAGAGGCCGCCTACCAAGCATCATTGTCACA
AATCAAAGGACAACTTGATGCTGAAAGTAAAACATTGGCACAATCCAACG
AAGAGAACATCCACTTGAAAGCCATCATTGAAGAGATGAACGCAAAGATT
GGAAAACTCGACAGCCGATGCAATTCCGTTGAAGAACAAAACAGATCATT
GATTCACACTTTGGAATGTGAGCGACAACAAGCACAAAACACCATCAAAG
AACTTGAACATAAATTACGTGAGATGCAAGAGCACTTGAACGCGAAAATC
CGTGAACTCAACGTCGCGTACAATGCACAAATCCCATTGGATCTTGAAAT
CGAAGCTTTCGCCAACTTATTGGACGCTGAAGAAAAACGGTAAGACATTC
TCACCATCAATGTTAAGGAAGCCTAGCAATAGAATAAAAATACAGCAAAT
TACTTTTCAGTCAAAAAATCGCTCGCTCTAAAAACCTTCTAATCAAGCAT
ATCTAATTCTCGACAAACAAAACCAATCTTCAAACCCATCAAGCTCTAAT
AGTCAAATTTAACATGTACGCTTTAATTATGAATGATTTTTATAACTAAA
AATGATATCATTTCTAAATCACAGATTGAGCGTTGCATTGGCAAATCCAC
CAAGTGAATTGGTTCAAACAGCCCGTGGCGACTTAGTCTCCAGCCGAGGC
CACTACACCGGAGTTCGATCAATGCCGGGCAGTCCTCGAAAACCAGTCAG
CGGTATCAACAACAGTCCAACCAACTTCTCAGCAAGACCAAAATCAGTTC
CAATTAATGAAGACACCAAAGAACTTCCAAGGTCGGATTCACCAGGCAAA
CCAGGATCACCGGGCGCTTACTATCTCCCTGGAATCGGAGATAACTCGAG
CAGGTAAAATTAGTTTTTTTAACTATAACTTGTTAAAAGCTTATATTTTT
AAAGGTACTTGTACCTAGATATAAACAATTAAACTACTCAATTCAAATCA
ATGTTAAACTAATGAAGTCGGATAAAGTACGTTTTAAAGCATTAACATAA
ACGACTCAAGAAACTTAAATTTAGATCCCATACTATGTAAACATTTAAAT
ATTCTAAATAAAACACCTACAAATAGAGCCGTTAGAGACAACTAGTTACC
ATTAAACTTAATCAAACTAAATAATTTTCTTACCTTAGAATCTTCAAGAA
CCCACGTGGTAACTACGGTACAACTGCCACGCCGCAAACACGTGTTTTCT
ACAACAAGAAATAAATTTCATAAAATTGATCATCAAATATAATGATAAAT
TTAAATGACTAAAAATAAGATCTTAGACTATTATCAAAACGATTAAATTT
TCGGAGAGAACCCTGGCTAATTGGAAGTGAATAGACACAAAAGGCAACTG
AAAGAAGAGAAAGTGTTGATGGAGATCTAGATCTGCTCTGGTAACTAAAA
TGTTAGTACCAAAGAGCTAGGCTGGAGCAATGATCCTTTATTTAATTATT
TTAATTTATTTAAACTTAAATGATTTTAACCCTTAACTCACACACAGAAG
TTGGGAATTGTAAAGATTTAGTAAAATAGTATAGTTAATAAAAATCCAAA
ATATTAATGTTTGTAAAGATATCAGCATCAATTTGAATAATTTTGAAAAT
TTCTTTAAAGTTGCACTTTTTATGATGATTTTAAACAATTTTTGATACTG
AAATAAATCATCTTAAAATAAATTAACTCAACTCAACTTATGATTTCAAC
TTAAAGGTTTTATTTTTACATAAGTGTTTCCGTTTCATATCAGACACATA
TTTCATATCAGGACAGTGTCTTGCTATTGTTATATTATGCTGATTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00007313-exon-sc0000075-1575043694:405902..406058 | TCONS_00007313-exon-sc0000075-1575043694:405902..406058 | Clytia hemisphaerica | exon |
TCONS_00007313-exon-sc0000075-1575043694:405146..405463 | TCONS_00007313-exon-sc0000075-1575043694:405146..405463 | Clytia hemisphaerica | exon |
TCONS_00007313-exon-sc0000075-1575043694:403549..403831 | TCONS_00007313-exon-sc0000075-1575043694:403549..403831 | Clytia hemisphaerica | exon |
TCONS_00007313-exon-sc0000075-1575043694:401620..402152 | TCONS_00007313-exon-sc0000075-1575043694:401620..402152 | Clytia hemisphaerica | exon |
TCONS_00007313-exon-sc0000075-1575043694:401106..401384 | TCONS_00007313-exon-sc0000075-1575043694:401106..401384 | Clytia hemisphaerica | exon |
TCONS_00007313-exon-sc0000075-1575043694:400162..400820 | TCONS_00007313-exon-sc0000075-1575043694:400162..400820 | Clytia hemisphaerica | exon |
TCONS_00007313-exon-sc0000075-1510915933:405902..406058 | TCONS_00007313-exon-sc0000075-1510915933:405902..406058 | Clytia hemisphaerica | exon |
TCONS_00007313-exon-sc0000075-1510915933:405146..405463 | TCONS_00007313-exon-sc0000075-1510915933:405146..405463 | Clytia hemisphaerica | exon |
TCONS_00007313-exon-sc0000075-1510915933:403549..403831 | TCONS_00007313-exon-sc0000075-1510915933:403549..403831 | Clytia hemisphaerica | exon |
TCONS_00007313-exon-sc0000075-1510915933:401620..402152 | TCONS_00007313-exon-sc0000075-1510915933:401620..402152 | Clytia hemisphaerica | exon |
TCONS_00007313-exon-sc0000075-1510915933:401106..401384 | TCONS_00007313-exon-sc0000075-1510915933:401106..401384 | Clytia hemisphaerica | exon |
TCONS_00007313-exon-sc0000075-1510915933:400162..400820 | TCONS_00007313-exon-sc0000075-1510915933:400162..400820 | Clytia hemisphaerica | exon |
TCONS_00007313-exon-sc0000075-1491911889:405902..406058 | TCONS_00007313-exon-sc0000075-1491911889:405902..406058 | Clytia hemisphaerica | exon |
TCONS_00007313-exon-sc0000075-1491911889:405146..405463 | TCONS_00007313-exon-sc0000075-1491911889:405146..405463 | Clytia hemisphaerica | exon |
TCONS_00007313-exon-sc0000075-1491911889:403549..403831 | TCONS_00007313-exon-sc0000075-1491911889:403549..403831 | Clytia hemisphaerica | exon |
TCONS_00007313-exon-sc0000075-1491911889:401620..402152 | TCONS_00007313-exon-sc0000075-1491911889:401620..402152 | Clytia hemisphaerica | exon |
TCONS_00007313-exon-sc0000075-1491911889:401106..401384 | TCONS_00007313-exon-sc0000075-1491911889:401106..401384 | Clytia hemisphaerica | exon |
TCONS_00007313-exon-sc0000075-1491911889:400162..400820 | TCONS_00007313-exon-sc0000075-1491911889:400162..400820 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000075 | supercontig | sc0000075:400162..406058 - |
Blast
BLAST of TCONS_00007313 vs. Swiss-Prot (Human)
Match: LMNB2 (Lamin-B2 OS=Homo sapiens GN=LMNB2 PE=1 SV=4) HSP 1 Score: 94.7449 bits (234), Expect = 4.648e-20 Identity = 107/410 (26.10%), Postives = 186/410 (45.37%), Query Frame = 3
Query: 177 SPVIVSQRAKERDYLLALNDRFQNYVSRVRTMREQGKQIENNTFIAHTQALE----NELFEVKSIYEKELETCRGQLDSMTSERNAYQLEASKKGALATEYQ---DKYNNELTTR----KKLENALADAHR-------LLSEKDSL---IQELRITIAQHQNAHLDTTKERDALQSTLNAVQTLCDSESKARADLEASVQKLSDQLTFERQLHDKALMELNNKLSAAERAISIADEKLREHDIVDDNLAQTIAKMRMQTQAEFRRFQDESEAAYQASLSQIKGQLDAESKTLAQSNEENIHLKAIIEEMNAKIGKLDSRCNSVEEQNRSLIHTLECERQQAQNTIKELEHKLREMQEHLNAKIRELNVAYNAQIPLDLEIEAFANLLDAEEKRLSVALANPPSELVQTAR 1343
SP +S R +E++ L LNDR +Y+ RVR + ++EN+ + E E+ +K++YE EL R LD ER Q+E K A E K ELT K LE+ HR LS+K L + ELR +A+ ++ H K+ + E+ R DLE Q L ++L F + + ++ + + R + + + +E+D +AQ + ++R Q + R ++ E E YQA L K D K + + EE + +E ++ ++ L + ++ E++ R L + ER + + + E ++ EM++ + ++ E + ++ LD+EI A+ LL+ EE+RL L+ PS V +R
Sbjct: 37 SPTRLS-RLQEKEELRELNDRLAHYIDRVRAL-----ELENDRLLLKISEKEEVTTREVSGIKALYESELADARRVLDETARERARLQIEIGKLRAELDEVNKSAKKREGELTVAQGRVKDLESLF---HRSEVELAAALSDKRGLESDVAELRAQLAKAEDGHAVAKKQ--------------LEKETLMRVDLENRCQSLQEELDFRKSVFEEEVR--ETRRRHERRLVEVDSSRQQEYDF---KMAQALEELRSQHDEQVRLYKLELEQTYQAKLDSAKLSSDQNDKAASAAREELKEARMRLESLSYQLSGLQKQASAAEDRIRELEEAMAGERDKFRKMLDAKEQEMTEMRDVMQQQLAEYQELLDVKLALDMEINAYRKLLEGEEERLK--LSPSPSSRVTVSR 416
The following BLAST results are available for this feature:
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