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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007310 ID=TCONS_00007310|Name=TCONS_00007310|organism=Clytia hemisphaerica|type=transcript|length=3188bpRun BLAST on NCBI transcript from alignment at sc0000075:391793..402640- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007310 ID=TCONS_00007310|Name=TCONS_00007310|organism=Clytia hemisphaerica|type=transcript|length=10848bp|location=Sequence derived from alignment at sc0000075:391793..402640- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00007310 vs. Swiss-Prot (Human)
Match: LMNB2 (Lamin-B2 OS=Homo sapiens GN=LMNB2 PE=1 SV=4) HSP 1 Score: 128.642 bits (322), Expect = 1.645e-30 Identity = 114/470 (24.26%), Postives = 214/470 (45.53%), Query Frame = 1
Query: 13 KLENALADAHRLLSEKDSLIQELRITIAQHQNAHLDTTKERDALQSTLNAVQTLCDSESKARADLEASVQKLSDQLTFERQLHDKALMELNNKLSAAERAISIADEKLREHDIVDDNLAQTIAKMRMQTQAEFRRFQDESEAAYQASLSQIKGQLDAESKTLAQSNEENIHLKAIIEEMNAKIGKLDSRCNSVEEQNRSLIHTLECERQQAQNTIKELEHKLREMQEHLNAKIRELNVAYNAQIPLDLEIEAFANLLDAEEKRLSVALANPPSELVQTARGDLVSSRGHYTGVRSMPGSPRKPVSG---INNSPTNFSARPKSVPINEDTKELPRSDSPGKPGSPGAYYLPGIGDNSSSTHHVRIFHVDPAGKFIRIFNNSNYQDENIGGY-IIQQNMNGRPVGMFRFPPKTILKASSYTTVWSASSLAKHNPPSDFLWRAQPVWRTGINTTTILSKPNGMAISWTTPVK 1410
+L AL+D L S+ + ELR +A+ ++ H K+ + E+ R DLE Q L ++L F + + ++ + + R + + + +E+D +AQ + ++R Q + R ++ E E YQA L K D K + + EE + +E ++ ++ L + ++ E++ R L + ER + + + E ++ EM++ + ++ E + ++ LD+EI A+ LL+ EE+RL L+ PS V +R SS R + S RK + + + P+ ++L +S++ V I +D GKF+++ NNS+ +D+++G + I +Q + G + ++F PK IL+A TVW+A + H+PPS +W+ Q W TG + T+L +G ++ T K
Sbjct: 162 ELAAALSDKRGLESD----VAELRAQLAKAEDGHAVAKKQ--------------LEKETLMRVDLENRCQSLQEELDFRKSVFEEEVR--ETRRRHERRLVEVDSSRQQEYDF---KMAQALEELRSQHDEQVRLYKLELEQTYQAKLDSAKLSSDQNDKAASAAREELKEARMRLESLSYQLSGLQKQASAAEDRIRELEEAMAGERDKFRKMLDAKEQEMTEMRDVMQQQLAEYQELLDVKLALDMEINAYRKLLEGEEERLK--LSPSPSSRVTVSRATSSSSGSLSATGR-LGRSKRKRLEVEEPLGSGPSVLGTGTGGSG---------------------GFHL---AQQASASGSVSIEEIDLEGKFVQLKNNSD-KDQSLGNWRIKRQVLEGEEIA-YKFTPKYILRAGQMVTVWAAGAGVAHSPPSTLVWKGQSSWGTGESFRTVLVNADGEEVAMRTVKK 579 The following BLAST results are available for this feature:
BLAST of TCONS_00007310 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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