TCONS_00007299 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007299
Unique NameTCONS_00007299
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1571

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007299 ID=TCONS_00007299|Name=TCONS_00007299|organism=Clytia hemisphaerica|type=transcript|length=1571bp
GTTCAAACTTATGAAAGGAGTAGAAATTTGATACGCCTGTTTGAGAAAGA
ATGAGCGACAATTATTTAGCAAACATTGTAAAAGGTCACAGAACAATTTA
GAAGATTGAAATACCACGTGATCAGATGGACATTCAAAAAACGTAAGTAT
TTCACTATTACGTTTTtataaacgtttttttgacATTCTCTTGAAAGCAC
AAATGGAAAATTAATTAGCAAAAAGTTCAAGAGAATCATCAGCTAAATGA
ATCTaagtattttttcattcagATATCAAAATGTCGATATCGAACAAACT
TGATAGTTGGACGGTAAAAGTGATAAGTTTAAAAAGTAGCCCAGAAATCT
AGAAGATTTAGATCCGAAAGGATTTGAAAAAactcttgaatatttttatt
atcAGGTCCGTGCTAGGGCATCATTGAACTTGAACAGAACAGACCATAGA
ATAAGCGGTGATTCGAGCCGGGAACCCTTATGGTTTCTTGTGCTGAATCC
TTCGATAACTTGCTCAGCGCTTGAAAaatgtgtttttataaaaagagcTT
TATATTTTTCTTGGTTGCTTTATTGTGACTAATTCTTCAAACCTAATACA
TAGGGTTTGTTATTCGTACCCTTGCGTTGTATATCTTCATTTTAGGGTTT
TTGAGtgaataaaagaaatcaaaagaaaaatggccAAATTATCCGACAAT
ATAATGACAGAAATTAAAGAAGTGGTCAGCATATTCGATCGAGTTGGTGA
TGGAAAAATTGATGTCAATGATATTGTCAATATCCTCAGATCATTAGaTT
TGAATCCTGGATCTCATGATTGGGATGCTGAAatgaaacaatttcaaaaa
gacGACAAATTTCGCATCGAAGTCGACGAGTTTGCTTCTATTTATGAACA
AgaatcaaaaaagaagaaagtcaacgaaaaagaaatttacgaGGCTTTAA
AAGCTGTTGATCCACATAATAAAGATATTGGTTTGGTCAACCGAGCAGCG
TTATCCCGTTATTTGTGTAACCTTGGTGACACGATGTCAATGGAGGAAAC
AGATAGCATTATGAAAGACGTAATGGATAAAGACCACAGGAGTGTTGTCA
TTGCCGACCTCATGAAACTCGTAATGACCGAATAGTGGTCTGGTGCCAAG
TGCAACTAAGCATGCAAAATTATCTAGTCGCTGTACTTCTTGTAACATAA
TCATGTCAACTAAATAGCCTGATTGGccatttcaaaaaactttcatcGGA
TTGCATATAAAAAGCTTGAGCCTTTTAAAGTAGAATTTGATAGTTGTTCA
AAGTTCGATTGTACATAACCTTAATCTTTTACTACTGTATGAACATATCG
CAGTATTTAaattaaattatgaaaaagctGGTGAATACCTTCAGTATAAC
CTCAAAATCGCTGTCTTCAACCGCCTCAATAAAGACTCTACTCTACCCTT
AGGTTGAATTTCAACATTTCTAGatagctttcggatgttcttaacttttt
gagattaccaaagatgttcttaacatgttcttattctcACCATTTCACCA
Tacctgagtatttttgtccat
Run BLAST on NCBI

protein sequence of TCONS_00007299-protein

>TCONS_00007299-protein ID=TCONS_00007299-protein|Name=TCONS_00007299-protein|organism=Clytia hemisphaerica|type=polypeptide|length=151bp
MAKLSDNIMTEIKEVVSIFDRVGDGKIDVNDIVNILRSLDLNPGSHDWDA
EMKQFQKDDKFRIEVDEFASIYEQESKKKKVNEKEIYEALKAVDPHNKDI
GLVNRAALSRYLCNLGDTMSMEETDSIMKDVMDKDHRSVVIADLMKLVMT
E
Run BLAST on NCBI

transcript from alignment at sc0000075:228365..231870-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007299 ID=TCONS_00007299|Name=TCONS_00007299|organism=Clytia hemisphaerica|type=transcript|length=3506bp|location=Sequence derived from alignment at sc0000075:228365..231870- (Clytia hemisphaerica)
GTTCAAACTTATGAAAGGAGTAGAAATTTGATACGCCTGTTTGAGAAAGA
ATGAGCGACAATTATTTAGCAAACATTGTAAAAGGTCACAGAACAATTTA
GAAGATTGAAATACCACGTGATCAGATGGACATTCAAAAAACGTAAGTAT
TTCACTATTACGTTTTTATAAACGTTTTTTTGACATTCTCTTGAAAGCAC
AAATGGAAAATTAATTAGCAAAAAGTTCAAGAGAATCATCAGCTAAATGA
ATCTAAGTATTTTTTCATTCAGATATCAAAATGTCGATATCGAACAAACT
TGATAGTTGGACGGTAAAAGTGATAAGTTTAAAAAGTAGCCCAGAAATCT
AGAAGATTTAGATCCGAAAGGATTTGAAAAAACTCTTGAATATTTTTATT
ATCAGGTCCGTGCTAGGGCATCATTGAACTTGAACAGAACAGACCATAGA
ATAAGCGGTGATTCGAGCCGGGAACCCTTATGGTTTCTTGTGCTGAATCC
TTCGATAACTTGCTCAGCGCTTGAAAAATGTGTTTTTATAAAAAGAGCTT
TATATTTTTCTTGGTTGCTTTATTGTGACTAATTCTTCAAACCTAATACA
TAGGGTTTGTTATTCGTACCCTTGCGTTGTATATCTTCATTTTAGGGTTT
TTGAGTGAATAAAAGAAATCAAAAGAAAAATGGCCAAATTATCCGACAAT
ATAATGACAGAAATTAAAGAAGTGGTCAGCATATTCGATCGAGTTGGTGA
TGGAAAAATTGATGTCAATGATATTGTCAATATCCTCAGATCATTAGGTA
GGACAAATTATTAAAGTAGACGTGCTCTACCTCCCCTCCTCTCAGCCATC
ACGCAAACACTAGGGGACTTATAATCTATATCGAGTATGTAATAAATAGT
CATTGAACTGTAGCCAACTAACTCATTGTATACTGCAAAAATGAATGTTT
ATCACTTCGCACAAGTGCTACATTCAAATCAAATCATCTCAGCTTTGGCA
AAAATAAAATAGGTCAAGTTTGGTTTCTTTGGAATGCTAATTTTCTCATT
TTCTTTAGCGGCATGGGAAAATTCGAGATGTGAAACACCCCTCTCTCTTT
ATGGAGCTTTCCGAACATAAAACCACCGTTTGTGTTCTAGTTATGGTACC
TTCATTAGAGAGAGTACTGCTATAATCACGAACGCAACCGAGAAATGTAA
TAGACCAATGGAGTTGGTTAGAACACATCATTTTTCCACTTCTTATGAAC
TAATAAATCAAAACCCTATAGTTTAATCCTTTTTCCTCATGACTTTAACC
CTATTCAAACTAGGCTTTTAGGGGCGGTTCAGAACTAGGGGGGGGGGCCT
TTCCTGTACCACCCCTTAACTTTTGATCTAGTGGATCTTTTTGGATGAAA
TTTGGCACACAAGATCCTTGTCACGTAAGGTAACTTTTGACAAAGTTTTT
TTTTGATGACGTCACTCATCATGCCCAAAGTGAGCAAAAACCGAAATTTT
CCATTGTTCTTACAAATAGCTATTGTATTCTAACAAAGGCTTTAGAAAAA
AGTTGCCTGGGTTTAAAATGCTTATTTTATCCTAAATATTCAATAAATTA
CGGTTTAAACGATATATTTGACATTAAAAATAAATTTGTATTGGAAAAGT
GTCATTTTTTGTGACACCTTACTGTCAGAAATGTCATCATGCTCAAGGTG
TGAAAATATTTAGGAGTCAATTTTTTTTTATTTTGAAGCAAAATAAAAGT
TAGGAATTTACAGAAAATTTCACCGCAAAAGCTCTATTATTTCAGGAGCT
ATTACCAATAGTTTGACTTCCGAACAGAAAGAGCCCCCCCCCCTAGTCCG
AATAGGGTTAAGATATTTTAGAAATAACTTCAAACATTTTCAAACTTTAG
ATTTGAATCCTGGATCTCATGATTGGGATGCTGAAATGAAACAATTTCAA
AAAGACGACAAATTTCGCATCGAAGTCGACGAGTTTGCTTCTATTTATGA
ACAAGAATCAAAAAAGAAGAAAGTCAACGAAAAAGAAATTTACGAGGCTT
TAAAAGCTGTTGATCCACATAATAAAGATATTGGTAAGTATTTCTACCAT
TAAAATTCACATCGAAAATTTACTTTTGACGTTTAAATTTTAACTTTTTG
CTCTGAAATATTTTTGAAAATAATCTCCACCCCACTCTAGTAGATACTTT
CGGATCACTCCCAAGGACTTGGTACAAGTTAGGACAGAGGGAGTGATCAT
AAAGTATCTACTAGAGTGGGGTGGAGGATATTTTCAAAAATTCCAAAAGA
AATCGCACCCTCTTGATATCCTCAAAAGAATTTCAAGCCCCCCTAACTAG
TCAATATATTTTTGGTACTCCCTCCTAACATAGGCCACTTAAAATGTTCT
TTGACCACTCAAAACGGATGATTTGAAGCTACAATAATAGCAGCCGCCAG
AGACGTAGCCATGACTTTTCGGTTCGGGGCGGGGGGAAAATTGAAAAATA
ATCTGACCTTTTTTAGGATGAAATTTTTGAGAAAATTTTTCTCGTAACTT
AAGCGCCGCACGCCTCGAAAAACTTTGCTCTTAGCAAGATCAAATGGCCT
AAAAAAAGCCTTGAAAAGGTCAAGGTTGGCGAGCGAAAATAAACTCACAA
AAAGCGCCGAAAGCATGAAGTTTCATGTCACAGAAAGCTTTCTTTGTAAT
TTTGGTGCCGCAAGAAAAAAATTTGGTCTAAGAAAAGTCAAACAGCTTAA
AGGAGAAAAAGGTCAAAGTAGTATTCTGTACATATTAATGGAACATAGGT
TTGGGTTACCCACCCCTGCCTCGCCTTCACCTAAAAGGTTATGGAAATTA
TAGATAGCTAACGGTTGTCTCCTTATAAGGTGAAATTTATAAGTAAATTA
ATCGATACATTCTAGGTTTGGTCAACCGAGCAGCGTTATCCCGTTATTTG
TGTAACCTTGGTGACACGATGTCAATGGAGGAAACAGATAGCATTATGAA
AGACGTAATGGATAAAGACCACAGGAGTGTTGTCATTGCCGACCTCATGA
AACTCGTAATGACCGAATAGTGGTCTGGTGCCAAGTGCAACTAAGCATGC
AAAATTATCTAGTCGCTGTACTTCTTGTAACATAATCATGTCAACTAAAT
AGCCTGATTGGCCATTTCAAAAAACTTTCATCGGATTGCATATAAAAAGC
TTGAGCCTTTTAAAGTAGAATTTGATAGTTGTTCAAAGTTCGATTGTACA
TAACCTTAATCTTTTACTACTGTATGAACATATCGCAGTATTTAAATTAA
ATTATGAAAAAGCTGGTGAATACCTTCAGTATAACCTCAAAATCGCTGTC
TTCAACCGCCTCAATAAAGACTCTACTCTACCCTTAGGTTGAATTTCAAC
ATTTCTAGATAGCTTTCGGATGTTCTTAACTTTTTGAGATTACCAAAGAT
GTTCTTAACATGTTCTTATTCTCACCATTTCACCATACCTGAGTATTTTT
GTCCAT

Coding sequence (CDS) from alignment at sc0000075:228365..231870-

>TCONS_00007299 ID=TCONS_00007299|Name=TCONS_00007299|organism=Clytia hemisphaerica|type=CDS|length=1368bp|location=Sequence derived from alignment at sc0000075:228365..231870- (Clytia hemisphaerica)
GTTTGGTCAACCGAGCAGCGTTATCCCGTTATTTGTGTAACCTTGGTGAC
ACGATGTCAATGGAGGAAACAGATAGCATTATGAAAGACGTAATGGATAA
AGACCACAGGAGTGTTGTCATTGCCGACCTCATGAAACTCGTAATGACCG
AATAGATTTGAATCCTGGATCTCATGATTGGGATGCTGAAATGAAACAAT
TTCAAAAAGACGACAAATTTCGCATCGAAGTCGACGAGTTTGCTTCTATT
TATGAACAAGAATCAAAAAAGAAGAAAGTCAACGAAAAAGAAATTTACGA
GGCTTTAAAAGCTGTTGATCCACATAATAAAGATATTGATGGCCAAATTA
TCCGACAATATAATGACAGAAATTAAAGAAGTGGTCAGCATATTCGATCG
AGTTGGTGATGGAAAAATTGATGTCAATGATATTGTCAATATCCTCAGAT
CATTAGGTTTGGTCAACCGAGCAGCGTTATCCCGTTATTTGTGTAACCTT
GGTGACACGATGTCAATGGAGGAAACAGATAGCATTATGAAAGACGTAAT
GGATAAAGACCACAGGAGTGTTGTCATTGCCGACCTCATGAAACTCGTAA
TGACCGAATAGATTTGAATCCTGGATCTCATGATTGGGATGCTGAAATGA
AACAATTTCAAAAAGACGACAAATTTCGCATCGAAGTCGACGAGTTTGCT
TCTATTTATGAACAAGAATCAAAAAAGAAGAAAGTCAACGAAAAAGAAAT
TTACGAGGCTTTAAAAGCTGTTGATCCACATAATAAAGATATTGATGGCC
AAATTATCCGACAATATAATGACAGAAATTAAAGAAGTGGTCAGCATATT
CGATCGAGTTGGTGATGGAAAAATTGATGTCAATGATATTGTCAATATCC
TCAGATCATTAGGTTTGGTCAACCGAGCAGCGTTATCCCGTTATTTGTGT
AACCTTGGTGACACGATGTCAATGGAGGAAACAGATAGCATTATGAAAGA
CGTAATGGATAAAGACCACAGGAGTGTTGTCATTGCCGACCTCATGAAAC
TCGTAATGACCGAATAGATTTGAATCCTGGATCTCATGATTGGGATGCTG
AAATGAAACAATTTCAAAAAGACGACAAATTTCGCATCGAAGTCGACGAG
TTTGCTTCTATTTATGAACAAGAATCAAAAAAGAAGAAAGTCAACGAAAA
AGAAATTTACGAGGCTTTAAAAGCTGTTGATCCACATAATAAAGATATTG
ATGGCCAAATTATCCGACAATATAATGACAGAAATTAAAGAAGTGGTCAG
CATATTCGATCGAGTTGGTGATGGAAAAATTGATGTCAATGATATTGTCA
ATATCCTCAGATCATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004097XLOC_004097Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007299-proteinTCONS_00007299-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007299-exon-sc0000075-1575043694:231074..231870TCONS_00007299-exon-sc0000075-1575043694:231074..231870Clytia hemisphaericaexon
TCONS_00007299-exon-sc0000075-1575043694:229788..229970TCONS_00007299-exon-sc0000075-1575043694:229788..229970Clytia hemisphaericaexon
TCONS_00007299-exon-sc0000075-1575043694:228365..228955TCONS_00007299-exon-sc0000075-1575043694:228365..228955Clytia hemisphaericaexon
TCONS_00007299-exon-sc0000075-1510915933:231074..231870TCONS_00007299-exon-sc0000075-1510915933:231074..231870Clytia hemisphaericaexon
TCONS_00007299-exon-sc0000075-1510915933:229788..229970TCONS_00007299-exon-sc0000075-1510915933:229788..229970Clytia hemisphaericaexon
TCONS_00007299-exon-sc0000075-1510915933:228365..228955TCONS_00007299-exon-sc0000075-1510915933:228365..228955Clytia hemisphaericaexon
TCONS_00007299-exon-sc0000075-1491911889:231074..231870TCONS_00007299-exon-sc0000075-1491911889:231074..231870Clytia hemisphaericaexon
TCONS_00007299-exon-sc0000075-1491911889:229788..229970TCONS_00007299-exon-sc0000075-1491911889:229788..229970Clytia hemisphaericaexon
TCONS_00007299-exon-sc0000075-1491911889:228365..228955TCONS_00007299-exon-sc0000075-1491911889:228365..228955Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000075supercontigsc0000075:228365..231870 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0294932	0	19.8119	15.156	97.1186	101.236	155.431	127.979	62.7563	104.765	8.22885	6.31485	0	0	2.58117	3.68783	11.519	9.88064	19.6694	19.7901	3.85277	5.34913	7.38325	9.95895	17.9301	17.039	0.231292	0.23565
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007299 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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