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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007298 ID=TCONS_00007298|Name=TCONS_00007298|organism=Clytia hemisphaerica|type=transcript|length=1297bp
CTGAAATGCAAGATCAATGCACGCTAAACTCAAATTTCTAAGGaCATAAG
AAACAACCGAAATATaacacattcttcaaaaatgTATGGGCAAAACTTAT
TGAGTACCATCTTCCTCATCCTACCGACATTGAGTCTGGCATGCAACTTC
ACCAAGATTGATCCTATCACACATGTGGAAAAACCATTACAACTGACTAT
CTACACAACTGGAATTGAAACACGACGCTTCATGAACAAACCCCCTAACG
TTACAACACTTCCACAGGAATTGGTATACAAGAAAGAAGCAAAGCCAGGG
GTGGTAGATGGATTTAGCCTCCTTTACCCAGATGGTATGAATTATACATT
TAACATGTATATCGATGGTCcgaaaaacatttctttcgCTTATTCctttt
ttgaggtttttaaTGGAAAAGTAAACAAATCGGATTGCGTTATAACACGA
TATCCATACAAACTGAATCAAGCTCAAGATCATGTTTACTTCAAATTGGG
CACTTCACATAAGAAAACATCTTATATCCTGAAATTCAAAGTCGAAGAGA
TGGAATCATCAGAAAGCTACAGATTGGTGGCTCAGTCATTCTTGGTTCTA
CTGActgctttttttgtaaattgtAATGTGGTATATTAAAGATACTCACG
TGCTACAAACCCGGTGGAACCACTTACTATCACCTACTCTAATTGAAATG
TACAACCAATGAAATAAGATCTTTTCCGATCCCCGTTGCAATTTGAATCA
TTGATTTTATGCTAACCGACCAATATTCTCACTGGGTCATTAAGGCAGAG
GTGTATTAGAATTAAATattatttctttgattttgaacaaattttatata
aaaGCATTTAAGAACACAtttgtcaagattttttaaCACTAGTTGAActa
gattttatcaaattaatCACCCAAGTTATAGTAGTAAATTATGTGACCAC
AGTCGAGGTCGACCCGAAAGCCCCATTTTCTTTTAGCTGTTTACCGAAAG
AGTAAAATTTATCCTTTCTCTAGACTAGCAAACtcgtctgttaattaatc
atgtcagagagCGGGAACGTaagggcgtttgctagaataggagctgcgta
ggagaataAGCAAAAGTTGTACACTTTCTCTAGTCTAGTATGCTAGACGA
TTATTCAGACATAAGCTGAGCacgcaaaaattaatgaaaggAGCAAATTG
TGGCTTacacaaactgatattatctcGTTACGATtattgtattatcatat
aacaacaatattactgtattacacggattATAAAGAACGACTCGATT Run BLAST on NCBI protein sequence of TCONS_00007298-protein >TCONS_00007298-protein ID=TCONS_00007298-protein|Name=TCONS_00007298-protein|organism=Clytia hemisphaerica|type=polypeptide|length=185bp
MYGQNLLSTIFLILPTLSLACNFTKIDPITHVEKPLQLTIYTTGIETRRF
MNKPPNVTTLPQELVYKKEAKPGVVDGFSLLYPDGMNYTFNMYIDGPKNI
SFAYSFFEVFNGKVNKSDCVITRYPYKLNQAQDHVYFKLGTSHKKTSYIL
KFKVEEMESSESYRLVAQSFLVLLTAFFVNCNVVY Run BLAST on NCBI transcript from alignment at sc0000075:226253..227976- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007298 ID=TCONS_00007298|Name=TCONS_00007298|organism=Clytia hemisphaerica|type=transcript|length=1724bp|location=Sequence derived from alignment at sc0000075:226253..227976- (Clytia hemisphaerica)
CTGAAATGCAAGATCAATGCACGCTAAACTCAAATTTCTAAGGGTAAGAA
TTTTAGTTTTGTCATTTGGAATTATTTTGAAAAAAGGTAAGAAGAAGTGC
TTGTTTTTGTTCAAGCTTATATTTTCAACTTTAATCGAGAGTGTTTTGTT
TCTTATTTTACCCTGCAACTAGTGGGGGGAAAGGACAACATCGTTTAAAC
CGTAGAATATTTTATCAAATATTTACCCCATTTTAGGGAGGTGGTAATTT
AGTACACATGACTAAAATTTTTTGACATCACCTAATTTTGGTCTTTGGAT
TAATGAGTTTATCACCCATATTCAGTATCCCATGATGCAAAAAAAGGGTT
TGGAGATTTCTGGGTACGTCACTGAATCACCAAAAACTATGATGTCTGAG
ATTTTAGTACCGACTCCCCACACCTTAAATGACATCATCAATTCTTTTAA
AATGAAATCAAACTTTTTAGACATAAGAAACAACCGAAATATAACACATT
CTTCAAAAATGTATGGGCAAAACTTATTGAGTACCATCTTCCTCATCCTA
CCGACATTGAGTCTGGCATGCAACTTCACCAAGATTGATCCTATCACACA
TGTGGAAAAACCATTACAACTGACTATCTACACAACTGGAATTGAAACAC
GACGCTTCATGAACAAACCCCCTAACGTTACAACACTTCCACAGGAATTG
GTATACAAGAAAGAAGCAAAGCCAGGGGTGGTAGATGGATTTAGCCTCCT
TTACCCAGATGGTATGAATTATACATTTAACATGTATATCGATGGTCCGA
AAAACATTTCTTTCGCTTATTCCTTTTTTGAGGTTTTTAATGGAAAAGTA
AACAAATCGGATTGCGTTATAACACGATATCCATACAAACTGAATCAAGC
TCAAGATCATGTTTACTTCAAATTGGGCACTTCACATAAGAAAACATCTT
ATATCCTGAAATTCAAAGTCGAAGAGATGGAATCATCAGAAAGCTACAGA
TTGGTGGCTCAGTCATTCTTGGTTCTACTGACTGCTTTTTTTGTAAATTG
TAATGTGGTATATTAAAGATACTCACGTGCTACAAACCCGGTGGAACCAC
TTACTATCACCTACTCTAATTGAAATGTACAACCAATGAAATAAGATCTT
TTCCGATCCCCGTTGCAATTTGAATCATTGATTTTATGCTAACCGACCAA
TATTCTCACTGGGTCATTAAGGCAGAGGTGTATTAGAATTAAATATTATT
TCTTTGATTTTGAACAAATTTTATATAAAAGCATTTAAGAACACATTTGT
CAAGATTTTTTAACACTAGTTGAACTAGATTTTATCAAATTAATCACCCA
AGTTATAGTAGTAAATTATGTGACCACAGTCGAGGTCGACCCGAAAGCCC
CATTTTCTTTTAGCTGTTTACCGAAAGAGTAAAATTTATCCTTTCTCTAG
ACTAGCAAACTCGTCTGTTAATTAATCATGTCAGAGAGCGGGAACGTAAG
GGCGTTTGCTAGAATAGGAGCTGCGTAGGAGAATAAGCAAAAGTTGTACA
CTTTCTCTAGTCTAGTATGCTAGACGATTATTCAGACATAAGCTGAGCAC
GCAAAAATTAATGAAAGGAGCAAATTGTGGCTTACACAAACTGATATTAT
CTCGTTACGATTATTGTATTATCATATAACAACAATATTACTGTATTACA
CGGATTATAAAGAACGACTCGATT Coding sequence (CDS) from alignment at sc0000075:226253..227976- >TCONS_00007298 ID=TCONS_00007298|Name=TCONS_00007298|organism=Clytia hemisphaerica|type=CDS|length=558bp|location=Sequence derived from alignment at sc0000075:226253..227976- (Clytia hemisphaerica)
ATGTATGGGCAAAACTTATTGAGTACCATCTTCCTCATCCTACCGACATT
GAGTCTGGCATGCAACTTCACCAAGATTGATCCTATCACACATGTGGAAA
AACCATTACAACTGACTATCTACACAACTGGAATTGAAACACGACGCTTC
ATGAACAAACCCCCTAACGTTACAACACTTCCACAGGAATTGGTATACAA
GAAAGAAGCAAAGCCAGGGGTGGTAGATGGATTTAGCCTCCTTTACCCAG
ATGGTATGAATTATACATTTAACATGTATATCGATGGTCCGAAAAACATT
TCTTTCGCTTATTCCTTTTTTGAGGTTTTTAATGGAAAAGTAAACAAATC
GGATTGCGTTATAACACGATATCCATACAAACTGAATCAAGCTCAAGATC
ATGTTTACTTCAAATTGGGCACTTCACATAAGAAAACATCTTATATCCTG
AAATTCAAAGTCGAAGAGATGGAATCATCAGAAAGCTACAGATTGGTGGC
TCAGTCATTCTTGGTTCTACTGACTGCTTTTTTTGTAAATTGTAATGTGG
TATATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007298-exon-sc0000075-1575043694:227934..227976 | TCONS_00007298-exon-sc0000075-1575043694:227934..227976 | Clytia hemisphaerica | exon |
| TCONS_00007298-exon-sc0000075-1575043694:226253..227506 | TCONS_00007298-exon-sc0000075-1575043694:226253..227506 | Clytia hemisphaerica | exon |
| TCONS_00007298-exon-sc0000075-1510915933:227934..227976 | TCONS_00007298-exon-sc0000075-1510915933:227934..227976 | Clytia hemisphaerica | exon |
| TCONS_00007298-exon-sc0000075-1510915933:226253..227506 | TCONS_00007298-exon-sc0000075-1510915933:226253..227506 | Clytia hemisphaerica | exon |
| TCONS_00007298-exon-sc0000075-1491911889:227934..227976 | TCONS_00007298-exon-sc0000075-1491911889:227934..227976 | Clytia hemisphaerica | exon |
| TCONS_00007298-exon-sc0000075-1491911889:226253..227506 | TCONS_00007298-exon-sc0000075-1491911889:226253..227506 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000075 | supercontig | sc0000075:226253..227976 - |
Blast
The following BLAST results are available for this feature:
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