TCONS_00007292 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007292
Unique NameTCONS_00007292
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length568

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007292 ID=TCONS_00007292|Name=TCONS_00007292|organism=Clytia hemisphaerica|type=transcript|length=568bp
TTAGAGCAAGAAAAGTAAGACAATATTATCCAATGAAgctgaatttagaa
aatttaattcaGAAACGACGTTGGGCCGTTATAGCAACATGCATAGCTAT
CAGCTCATTCTTTATCGGATTTGTCTTCGACCGACATTTAACTGAAAATG
ACGGATTTTTGTCGATATTTCGACGTAATTTTGATTATTGTGATCGGTCG
TGGCATGACGTGAATGAAGAATATTCGACGGCACATGACGCCGCTTTGAA
GAAAATTGACGTCCATGAGATTGATAAAGTGTTCAAATATTTGGTAGAGA
AACCACATCTTGGAGGATCCAGACGAAACAATGAGCTCGGTGATTACATG
GCGGACAAATGGGAATCATATGGAATGAAAGTTTACAAGAAAACATATCA
AGTGTTATTAAGTGTTCCAAAGAAACCAGCTGTTCTTCAACTCTTTCATT
TGAACGGTAGTGTTGATTATGAACCAGAAATGATTGAGCATGCTTTTTAC
AAGGAGGAGAATCACACTGATCGAGTTCCGCCTTTTCATGCTTTTTCTGC
TGCTGGAGATGTTATGGT
Run BLAST on NCBI

protein sequence of TCONS_00007292-protein

>TCONS_00007292-protein ID=TCONS_00007292-protein|Name=TCONS_00007292-protein|organism=Clytia hemisphaerica|type=polypeptide|length=188bp
RARKVRQYYPMKLNLENLIQKRRWAVIATCIAISSFFIGFVFDRHLTEND
GFLSIFRRNFDYCDRSWHDVNEEYSTAHDAALKKIDVHEIDKVFKYLVEK
PHLGGSRRNNELGDYMADKWESYGMKVYKKTYQVLLSVPKKPAVLQLFHL
NGSVDYEPEMIEHAFYKEENHTDRVPPFHAFSAAGDVM
Run BLAST on NCBI

transcript from alignment at sc0000075:194695..196020-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007292 ID=TCONS_00007292|Name=TCONS_00007292|organism=Clytia hemisphaerica|type=transcript|length=1326bp|location=Sequence derived from alignment at sc0000075:194695..196020- (Clytia hemisphaerica)
TTAGAGCAAGAAAAGTAAGACAATATTATCCAATGAAGCTGAATTTAGAA
AATTTAATTCAGAAACGACGTTGGGCCGTTATAGCAACATGCATAGCTAT
CAGCTCATTCTTTATCGGATTTGTCTTCGACCGACATTTAACTGAAAATG
ACGGATTTTTGTCGATATTTCGACGTAATTTTGATTATTGTGATCGGTCG
TGGCATGACGTGAATGAAGAATATTCGACGGCACATGACGCCGCTTTGAA
GAAAATTGACGTCCATGAGATTGATAAAGTGTTCAAGTAAGAAAAATATC
ATTTTCCTTTGCGATCATTTATTTGTTACACATGTATGGTCTTTAAGTAT
AACTTAAAATTTGATTGATTGATTGATTGATTGACTGATAGACAGATTGT
CGGAGTTACTCATTCATTCATTCATACATATATTCATTCATTTCTGTAGA
TATTTGGTAGAGAAACCACATCTTGGAGGATCCAGACGAAACAATGAGCT
CGGTGATTACATGGCGGACAAATGGGAATCATATGGAATGAAAGTTTACA
AGAAAACATATCAAGTGTTATTAAGTGTTCCAAAGAAACCAGCTGTTCTT
CAACTCTTTCATTTGAACGGTAGTGTTGATTATGAACCAGAAATGATTGA
GCATGCTTTTTACAAGGAGGAGAATCACACTGATCGAGTTCCGCCTTTTC
ATGCTTTTTCTGCTGCTGGAGATGTTATGGTAAGGCTCGTTTTCGAAATT
TTTTAACCATTCGCATTGTCAAATCTTTTCGGTTGAAGATTCATCTATAG
CCTTCGGTTACAAATATATTGCTTTGTCGCCCGAAAATTTCAAGCGATTG
TTTGAAAGATGGCTGGAAAATTATCATTTGATATATTTCTGAACTCTATA
TGTAAAAATCCCTCTTAGTCCAGGCAATATGGGGCACTTACCCCCACCTT
GCCAGTNTTAATATTGATTGATTGATTGACTGATAGACAGATTGTCGGAG
TTACTCATTCATTCATTCATACATACATTCATTCATCTCTGTAGATATTT
GGTAGAGAAACCACATCTTGGAGGATCCATACGAAACAATGAGCTCGGTG
ATTACATGGCGGACAAATGGGAATCATATGGAATGAAAGTTTACAAGAAA
ACATATCAAGTGTTATTAAGTGTTCCAAAGAAACCAGCTGTTCTTCAACT
CTTTCATTTGAACGGTAGTGTTGATTATGAACCAGAAATGATTGAGCATG
CTTTTTACAAGGAGGAGAATCACACTGATCGAGTTCCGCCTTTTCATGCT
TTTTCTGCTGCTGGAGATGTTATGGT

Coding sequence (CDS) from alignment at sc0000075:194695..196020-

>TCONS_00007292 ID=TCONS_00007292|Name=TCONS_00007292|organism=Clytia hemisphaerica|type=CDS|length=1692bp|location=Sequence derived from alignment at sc0000075:194695..196020- (Clytia hemisphaerica)
ATGGCGGACAAATGGGAATCATATGGAATGAAAGTTTACAAGAAAACATA
TCAAGTGTTATTAAGTGTTCCAAAGAAACCAGCTGTTCTTCAACTCTTTC
ATTTGAACGGTAGTGTTGATTATGAACCAGAAATGATTGAGCATGCTTTT
TACAAGGAGGAGAATCACACTGATCGAGTTCCGCCTTTTCATGCTTTTTC
TGCTGCTGGAGATGTTATGATATTTGGTAGAGAAACCACATCTTGGAGGA
TCCAGACGAAACAATGAGCTCGGTGATTACAGAGCAAGAAAAGTAAGACA
ATATTATCCAATGAAGCTGAATTTAGAAAATTTAATTCAGAAACGACGTT
GGGCCGTTATAGCAACATGCATAGCTATCAGCTCATTCTTTATCGGATTT
GTCTTCGACCGACATTTAACTGAAAATGACGGATTTTTGTCGATATTTCG
ACGTAATTTTGATTATTGTGATCGGTCGTGGCATGACGTGAATGAAGAAT
ATTCGACGGCACATGACGCCGCTTTGAAGAAAATTGACGTCCATGAGATT
GATAAAGTGTTCAAATGGCGGACAAATGGGAATCATATGGAATGAAAGTT
TACAAGAAAACATATCAAGTGTTATTAAGTGTTCCAAAGAAACCAGCTGT
TCTTCAACTCTTTCATTTGAACGGTAGTGTTGATTATGAACCAGAAATGA
TTGAGCATGCTTTTTACAAGGAGGAGAATCACACTGATCGAGTTCCGCCT
TTTCATGCTTTTTCTGCTGCTGGAGATGTTATGATATTTGGTAGAGAAAC
CACATCTTGGAGGATCCAGACGAAACAATGAGCTCGGTGATTACAGAGCA
AGAAAAGTAAGACAATATTATCCAATGAAGCTGAATTTAGAAAATTTAAT
TCAGAAACGACGTTGGGCCGTTATAGCAACATGCATAGCTATCAGCTCAT
TCTTTATCGGATTTGTCTTCGACCGACATTTAACTGAAAATGACGGATTT
TTGTCGATATTTCGACGTAATTTTGATTATTGTGATCGGTCGTGGCATGA
CGTGAATGAAGAATATTCGACGGCACATGACGCCGCTTTGAAGAAAATTG
ACGTCCATGAGATTGATAAAGTGTTCAAATGGCGGACAAATGGGAATCAT
ATGGAATGAAAGTTTACAAGAAAACATATCAAGTGTTATTAAGTGTTCCA
AAGAAACCAGCTGTTCTTCAACTCTTTCATTTGAACGGTAGTGTTGATTA
TGAACCAGAAATGATTGAGCATGCTTTTTACAAGGAGGAGAATCACACTG
ATCGAGTTCCGCCTTTTCATGCTTTTTCTGCTGCTGGAGATGTTATGATA
TTTGGTAGAGAAACCACATCTTGGAGGATCCAGACGAAACAATGAGCTCG
GTGATTACAGAGCAAGAAAAGTAAGACAATATTATCCAATGAAGCTGAAT
TTAGAAAATTTAATTCAGAAACGACGTTGGGCCGTTATAGCAACATGCAT
AGCTATCAGCTCATTCTTTATCGGATTTGTCTTCGACCGACATTTAACTG
AAAATGACGGATTTTTGTCGATATTTCGACGTAATTTTGATTATTGTGAT
CGGTCGTGGCATGACGTGAATGAAGAATATTCGACGGCACATGACGCCGC
TTTGAAGAAAATTGACGTCCATGAGATTGATAAAGTGTTCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004093XLOC_004093Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007292-proteinTCONS_00007292-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007292-exon-sc0000075-1575043694:195735..196020TCONS_00007292-exon-sc0000075-1575043694:195735..196020Clytia hemisphaericaexon
TCONS_00007292-exon-sc0000075-1575043694:195511..195571TCONS_00007292-exon-sc0000075-1575043694:195511..195571Clytia hemisphaericaexon
TCONS_00007292-exon-sc0000075-1575043694:194695..194915TCONS_00007292-exon-sc0000075-1575043694:194695..194915Clytia hemisphaericaexon
TCONS_00007292-exon-sc0000075-1510915933:195735..196020TCONS_00007292-exon-sc0000075-1510915933:195735..196020Clytia hemisphaericaexon
TCONS_00007292-exon-sc0000075-1510915933:195511..195571TCONS_00007292-exon-sc0000075-1510915933:195511..195571Clytia hemisphaericaexon
TCONS_00007292-exon-sc0000075-1510915933:194695..194915TCONS_00007292-exon-sc0000075-1510915933:194695..194915Clytia hemisphaericaexon
TCONS_00007292-exon-sc0000075-1491911889:195735..196020TCONS_00007292-exon-sc0000075-1491911889:195735..196020Clytia hemisphaericaexon
TCONS_00007292-exon-sc0000075-1491911889:195511..195571TCONS_00007292-exon-sc0000075-1491911889:195511..195571Clytia hemisphaericaexon
TCONS_00007292-exon-sc0000075-1491911889:194695..194915TCONS_00007292-exon-sc0000075-1491911889:194695..194915Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000075supercontigsc0000075:194695..196020 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.75442	4.52812	3.63653	3.33807	1.19942	0.442307	1.7011	3.24736	1.24915	1.44413	1.51109	2.65658	2.42359	1.98744	1.83826	4.81074	1.00152	1.69187	0.0700346	0.0366431	0.509592	0.419447	2.49281	1.1238	1.77123	1.96086	0.813042	0.626673	0.548434	0.614644
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007292 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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