|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007284 ID=TCONS_00007284|Name=TCONS_00007284|organism=Clytia hemisphaerica|type=transcript|length=2075bp
gtagAAAACATTTTAACATACAATACATGCGAAACTAGCGCGGGAACTTC
CCGGACCATTTATAGAATTTATGCAGAGAAAAAAACGTGCGTGTTTATTT
GACCGTGTATCGATTGTTTATCAGATCAAATTTGATGGTTCTTCTAATCG
GACGGTTTTTTGGAAGTCTGAAATTGTGAGAAAATATAGGCataagagaa
aaacaacaaaacaattataGTGGAAAAGGTGACTCAATCTCGATTGAAAA
CTGTGACGAATTTGTAGTAACATTTTGGCACACTTTATAACAACAAAGTt
acaaaaagtttttgggatTTTGAATATtacgaaaacaaagaaatagaGAG
ATGGCACCTATTGATTATGACTTTACAATGAAAAATGAGTTTTTGGACAT
GGGGTTTCTGTGTAAACTTTTGAATGGTAGATCAAGCTCTACGTCTTCAT
CTCTACCATCACCACCAGCACCCAATTCAATTCACTTGGGAAGTCCTTAC
ATGCACAGAACATATAGTAAACTATCATCTATATCTTCAACTAGAACTGA
ACTAGGATCCTATATAGATTCAGGAGCATATGGTCCTTACAGTCAAAGTT
CTACTGGCAGCCCCAGTACCCCCTCTGATGTAGAGATGAGTTCTTATATG
GATGTTAGAAGATATGGCAGCTATACCGAAAGGTCTACTGGTAGCCCTGG
TACTCGATCAGAAAGTGGAGATTCTGTTTACTCTCCttatgaagaagaag
aaaataaagatgaaacagaATATTTCCAAGATAATGATAACGATAGTTTT
TGTGATGATGTCTTGAATGAAATCATGTTTTCACCTTCTGGTGAAGTTGA
TGTTATGCATCAGAAATTCTTTGAAGATAGTTTGTTTAAAAATGaATTCG
ATGATAACCAATCCACATTGAACTTACCAAACCAACCAGGCGAGAACAAC
AACCTCCAACAACAACAGATTGCATCATCACCAACACCAGTACAAACCAA
CACAATCTACCACATCCCAGCAGATACCAAAGAAGGTATAATCACCAAGC
CAACACCGCCATCAAACAACAACGACAGTGAAAACACCAATCTAAgtcga
acttcgaaaaaaatgcaacaaaaatcatattcaaaattaaaaacgaATTC
AAAACAGAATGCTGGCAAGAAGAACAAACGAAGAAGGCGAAAAAATCTTT
TGAAGCCAGGTAGTCAACTCTACCAATTCATCCTGCAATTACTGGACGAT
GAAAGCAAACGAGAACTTATTCGTTGGGAAAAGCCTAGAAGCATGGGTAT
CTTCCGAATCATCAATAAAGAGCAGGTTTCCCAGCTATGGGGAGACGCAC
GCAAAAGGACGATGACGTACGACAGTCTGAGCCGTGGATTACGTCATTAT
TACAGTCAAGGGTTACTGAATGCTGTTAACAAAAAATTGCATTATCAATT
TACCCAGAAAGCTTTGGACGAGTGGGAAGTTATAAGACATAAAGATTTAA
TAGAAGACAGATAAATCTGTCTGGGTCTGTCTTTGtagtaaaatttcttt
tgtaaaatatttcatgTTTGAGTGAGCCGTGTGTGTGTCCCTGAGTGTTA
ATAGATTTCAGCAGACGTAAGCGTATAGAGAGTACCTTGAaggctttttc
caatttttttgccttttttagaatataattttctttaaattcaaatcTTC
TTCTCTTTTGATAAGGTTAAAATTGCTTCTGAAGTTCTGATTTggaataa
aacaaatttttaaagactttttgcTACCTTTCTATAGACTTTGCATTCAT
TTAATAGTAGCAGGGGGGtccaaaaaatggaaattttgatgTTTAACCAT
CTTTTTAAACTAATTTTTCATGCTGTTTCCGAATTTGAAATCCGTTTTTA
CATATCTCTTACCCCTGGGCGGCTACCGGAGACCCTTTTTTCGGAAAACC
GCCCAAAACCgctaaaagtaattttttttgaaattttccattaTGAATAG
Ctttctaaagtctgttcacgataagtgtgcactcttttttcttttaccta
taacttttgaaggaattcttcaatc Run BLAST on NCBI transcript from alignment at sc0000075:71028..77804- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007284 ID=TCONS_00007284|Name=TCONS_00007284|organism=Clytia hemisphaerica|type=transcript|length=6777bp|location=Sequence derived from alignment at sc0000075:71028..77804- (Clytia hemisphaerica)
GTAGAAAACATTTTAACATACAATACATGCGAAACTAGCGCGGGAACTTC
CCGGACCATTTATAGAATTTATGCAGAGAAAAAAACGTGCGTGTTTATTT
GACCGTGTATCGATTGTTTATCAGATCAAATTTGATGGTTCTTCTAATCG
GACGGTTTTTTGGAAGTCTGAAATTGTGAGAAAATATAGGCATAAGAGAA
AAACAACAAAACAATTATAGTGGAAAAGGTGACTCAATCTCGATTGAAAA
CTGTGACGAATTTGTAGTAACATTTTGGCACACTTTATAACAACAAAGTT
ACAAAAAGTTTTTGGGATTTTGAATATTACGAAAACAAAGAAATAGAGAG
ATGGCACCTATTGATTATGACTTTACAATGAAAAATGAGTTTTTGGACAT
GGGGTTTCTGTGTAAACTTTTGAATGGTAGATCAAGCTCTACGTCTTCAT
CTCTACCATCACCACCAGCACCCAATTCAATTCACTTGGGAAGTCCTTAC
ATGCACAGAACATATAGTAAACTATCATCTATATCTTCAACTAGAACTGA
ACTAGGATCCTATATAGATTCAGGAGCATATGGTCCTTACAGTCAAAGTT
CTACTGGCAGCCCCAGTACCCCCTCTGATGTAGAGATGAGTTCTTATATG
GATGTTAGAAGATATGGCAGCTATACCGAAAGGTCTACTGGTAGCCCTGG
TACTCGATCAGAAAGTGGAGATTCTGTTTACTCTCCTTATGAAGAAGAAG
AAAATAAAGATGAAACAGAATATTTCCAAGATAATGATAACGATAGTTTT
TGTGATGATGTCTTGAATGAAATCATGTTTTCACCTTCTGGTGAAGTTGA
TGTTATGCATCAGAAATTCTTTGAAGATAGTTTGTTTAAAAATGGTATGT
TCGTTATAGGCCTTCATGTTTAGATCATATCAATTGGTTTAGTCTTGTTG
GAAGTTTGGGTGTGTCCCATAGAGATATTCAATATAGACTTTAGATCCTT
AAAGACCAATAAACAATTGAGACAACGCAACCACCATGTCAATGACTCAG
CTATGTTCTCCATCCACTGGATGAACGACACCACATGTTAAATAATTTCT
ACCAAATTTGAAATCTTAATCCATCATAAACAAAAGACTATCCATCTCTA
TTGATGGTTCCTTCTTCAATTCATTCCCACTGAAAGTTAAAATAATTTTT
CATTTCAATTTAGAATTCGATGATAACCAATCCACATTGAACTTACCAAA
CCAACCAGGCGAGAACAACAACCTCCAACAACAACAGATTGCATCATCAC
CAACACCAGTACAAACCAACACAATCTACCACATCCCAGCAGATACCAAA
GAAGGTAAGATTATATCAAAGTTTAAATTTTAAGAATGTAATAAACATTA
TATGCAAGCAAGATTAGTTACAATGGTAGGAAAGGTTTCAATTTAATTTC
ATTTTTAAGTTTTGTAGTATTCTAAATAAACTAAGAGAAAATCACTAAAT
TATATGTGTTCTGTCAGTCCATTTATTTTCAACATTTTCAACAATATCTA
AGACCCCTGTCTCACAGCCCCGGCCGAAATCTTTTCCTCAATGGCGATCA
AAATTCCTATTGAGATTCCGATGGGGATAGAAATTTTATTGTTCCAAGGT
TACAAAATCCAGTGGGGATGGTTTGAAGTGCAATTTTTAAACATTGAATT
TCGAGTGGGGGTGAAATCAAAGTCAATTTTCAGTGGGGCTGAAATTCCAG
GGACTTTCCCACCGGGGACGGAATTTTCGCTAAATTTTCCAGCGGGTCTG
TGACACAGGGGTGTATTCTAATAATTTCTTCGAAGGTATAATCACCAAGC
CAACACCGCCATCAAACAACAACGACAGTGAAAACACCAATCTAAGTCGA
ACTTCGAAAAAAATGCAACAAAAATCATATTCAAAATTAAAAACGAATTC
AAAACAGAATGCTGGCAAGAAGAACAAACGAAGAAGGCGAAAAAATCTTT
GTAAGTTGACTTTCATTATAATGTCAACAATTAATCTATAAATTTTAAGG
TTATGATGGATGCCATTTGGCACCCAAATCTAGGTGTGTTTGCCAATCCT
GTTCAAAGTCCATTTTTCCTCAGATTATATAGTTTAAGTATGACCAACTC
TATTTCATGCGGTTATCTGGTGAATGTATTATGGAAGCTTAAGTATTAAT
GTGATTAGAAAGGTACTAGTTTTTTAAGGCTGGGAATTTTAGCTTTATTT
ATCTTAGCCTAATATTCAAATGGGGATCAGCTATTTAATTTTGTTGTTTT
CTATGAAAGATTGTTTGCTATACAGATAAATGACTTTTTAGTCAAATTTT
AGAATTTAGGCTTGTGTGAAGTGTGTGAAGGAATAACAAATGCCAGTATA
ATTAAAGGGATATTTTTTAAAAGAATGGGCAGTATTATAAACCTCTTCGA
AAAGATGCTCGAGTTTGAAAGAATTCCTATTTTTGAGGATTTTTGAGCGA
TTTTTAGAGGGTATTACACTTCTTTAGATATTTTGTGAATTTTTAAACAA
TCTTTAGAGATGGATTTTCAAAAAATCGAAAATTAGTTTGACGAAAATGC
AAAATACTGTCAATGGATTTCGGTATTTGATTTAGTCTGGAAAATCATCG
AAATGATAGCGTGATCCTTAACATTCTCACGAAAGGATTTACATAGCATT
TTATAGGATCTATAAACTAAAAGAATTCTCTTTATCAACGTTTTTATTTA
CGTCATTCTTGTAAACGTTTAATCAATGCTTTTTGTACAAAAATACCTCT
GTTTCAGACAAGCTGAGAGAACTGATAGCAAATGCTGAAAGCCTTTATTT
AATAATTCTAGTTTTAAGCTTTTAAGTTTCAGCATTTTATCTTTTTATAA
CTTTAGAAACCACTTTTAGGGTGACTTCTATCCGATTCGTTAAGAACTAA
TTTGAATTTTCATGCGATATTTTCATACGAAAAGTAAGAAAATTAGGAGC
AAAAGAAACACTTCTAGAGCACATTAATAATTGTAATAGTAACTCTAAAC
TTTAACTAGTAAATAACTTTGGTCCGTTATTATTTTTGTCAATTACAGGT
TTAAAATTAGAGTTACTGAACTAAAATTACCGTGGGGTCACATGAGAAAC
GCTTGGAAGAGGTGCCCATAAAAAGATTAAGGTTAAAATACTGTACACCC
CCTTCTCACAGATCCGGTAGGGTTTTTCATCTAGCGGCGGTGGAAATAAC
GGACTGAAACTCGATGGGGTTTGATACTCCCATGCTTTTCATGGCTGGGA
TTTCATTGTTTATAAGTCAGAAAATTCAATGGGGATGTAAGAATAGAGCG
CAATTTTCTACAGTGAGTATTTGTTTATTTGATTTTTTTCATAGGGGACA
CAAAGTGGAGTACAATTTCCACTAGAGATAATACAATGCTGGACAAAAGG
TTGGTAGACTTCTGCAATATTTGCAAAATACTTCAATATCGATCAAAAAC
AAGTTCCCAAGAGGCTCTGGGTGCTTTCCNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCATCCCCTTTCAGACACATA
GAAGAGTCATTTTGCTCTATTTCTCATCATTTTTCACTGAAATTTCATTT
GTCTACAACCTTTTGTCCGGCATTGTATTTAGGCCATTTTTTTCCAGTGG
GAGCCACCGGGTTTGTAAGAGGGGGGATGTAGCCGTTGATAAATCTTTTG
AGGTTGGGTCACTTCCTTCAATGTGAAATATTATGTGTGTTTCAATTGTC
AGATGTTTTTGATAGAATTTATTTTTCAATTGCAAGCGGCCACGTCGCTT
TTTTCTTTTAATGTCAAGAATTTTAATCGTACTTCGGGGTCACAAAAATG
TTGTTTCTCTCGCAGATTTGAGTTTCTAATAAAAAATATAATTACGAAGT
GCGTTTTTCACATCTTAACTATTTTTCTTACAATTTGATTGTCACAAATG
TAAATTTTCTTATAAAAAACTAAAAGCTCACAGCATAGTTTCCACCTACG
CCATTTTTCTTCTCTCATTTCAAAAATGACTTTTTTAAACGATTTTGGCC
AGAATCCATTTGTTATCCGAAATGAAACCACACTAGCTTACAAAAGCAAT
GAAAAAATGGGGACAATTTTTCAGTCTATTTATGACTCACGCATACCTCA
ACTCTACAATTAAAATTTTATTGAATACAAAATGATTTAAGAAACTATAC
TATCACGGTCACATTGTACAAGACTTGATTGTCAAGTAGGTATAGGCTAG
CAGCGACGAGAGAAAGTCCTTTTAAGAAAGAGAGCTTTATGAATGGCTTT
CTCTTGTCCAATATGTGCAGTAATTACTCTCTTGAAGTTTCGCTGTATTG
AAAACGGAGAACAGAGATAACTGAATAAGGGTTTTATCTACAATAAGATG
TAGAGATGCAATCTCCAGCTGTTTGTACTTTTATATAATTATGAAAAGAT
AGGATGCGGGGGTGTAAGACTCGAGAGCTTGATAATGATGATGATTTTTG
GTAACTCCTATGGTACGTGACCTTTCTCCATGGCTTCTTAACTGACACAC
AACGTTGTTTCAACTATCATCTAACGTCCATATAAAATAGGCTAATAAGC
GATACGTTGTCTAAAAATTCTAGATCAACGCAAATTATTGAATCGCACAC
GACGTTGCTCCAATTTTCATAGTGATTAAACGTTAGCATCCTCATAGACA
AAATTTTGACGTCATTTCCTTATAAATTCATTACCAGCTCACCCAAAGGC
GACCGCGCCATTTTCTGTTTCTCTGATTCCCTTCTCGAACTTGAATTAGC
CAAATAGCCAAACTTGTATTTTATATACTTTTTTTCTATTATTTATTTCT
AGTGAAGCCAGGTAGTCAACTCTACCAATTCATCCTGCAATTACTGGACG
ATGAAAGCAAACGAGAACTTATTCGTTGGGAAAAGCCTAGAAGCATGGGT
ATCTTCCGAATCATCAATAAAGAGCAGGTTTCCCAGCTATGGGGAGACGC
ACGCAAAAGGACGATGACGTACGACAGTCTGAGCCGTGGATTACGTCATT
ATTACAGTCAAGGGTTACTGAATGCTGTTAACAAAAAATTGCATTATCAA
TTTACCCAGAAAGCTTTGGACGAGTGGGAAGTTATAAGACATAAAGATTT
AATAGAAGACAGATAAATCTGTCTGGGTCTGTCTTTGTAGTAAAATTTCT
TTTGTAAAATATTTCATGTTTGAGTGAGCCGTGTGTGTGTCCCTGAGTGT
TAATAGATTTCAGCAGACGTAAGCGTATAGAGAGTACCTTGAAGGCTTTT
TCCAATTTTTTTGCCTTTTTTAGAATATAATTTTCTTTAAATTCAAATCT
TCTTCTCTTTTGATAAGGTTAAAATTGCTTCTGAAGTTCTGATTTGGAAT
AAAACAAATTTTTAAAGACTTTTTGCTACCTTTCTATAGACTTTGCATTC
ATTTAATAGTAGCAGGGGGGTCCAAAAAATGGAAATTTTGATGTTTAACC
ATCTTTTTAAACTAATTTTTCATGCTGTTTCCGAATTTGAAATCCGTTTT
TACATATCTCTTACCCCTGGGCGGCTACCGGAGACCCTTTTTTCGGAAAA
CCGCCCAAAACCGCTAAAAGTAATTTTTTTTGAAATTTTCCATTATGAAT
AGCTTTCTAAAGTCTGTTCACGATAAGTGTGCACTCTTTTTTCTTTTACC
TATAACTTTTGAAGGAATTCTTCAATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007284-exon-sc0000075-1575043694:76911..77804 | TCONS_00007284-exon-sc0000075-1575043694:76911..77804 | Clytia hemisphaerica | exon |
| TCONS_00007284-exon-sc0000075-1575043694:76451..76591 | TCONS_00007284-exon-sc0000075-1575043694:76451..76591 | Clytia hemisphaerica | exon |
| TCONS_00007284-exon-sc0000075-1575043694:75805..75969 | TCONS_00007284-exon-sc0000075-1575043694:75805..75969 | Clytia hemisphaerica | exon |
| TCONS_00007284-exon-sc0000075-1575043694:71028..71902 | TCONS_00007284-exon-sc0000075-1575043694:71028..71902 | Clytia hemisphaerica | exon |
| TCONS_00007284-exon-sc0000075-1510915933:76911..77804 | TCONS_00007284-exon-sc0000075-1510915933:76911..77804 | Clytia hemisphaerica | exon |
| TCONS_00007284-exon-sc0000075-1510915933:76451..76591 | TCONS_00007284-exon-sc0000075-1510915933:76451..76591 | Clytia hemisphaerica | exon |
| TCONS_00007284-exon-sc0000075-1510915933:75805..75969 | TCONS_00007284-exon-sc0000075-1510915933:75805..75969 | Clytia hemisphaerica | exon |
| TCONS_00007284-exon-sc0000075-1510915933:71028..71902 | TCONS_00007284-exon-sc0000075-1510915933:71028..71902 | Clytia hemisphaerica | exon |
| TCONS_00007284-exon-sc0000075-1491911889:76911..77804 | TCONS_00007284-exon-sc0000075-1491911889:76911..77804 | Clytia hemisphaerica | exon |
| TCONS_00007284-exon-sc0000075-1491911889:76451..76591 | TCONS_00007284-exon-sc0000075-1491911889:76451..76591 | Clytia hemisphaerica | exon |
| TCONS_00007284-exon-sc0000075-1491911889:75805..75969 | TCONS_00007284-exon-sc0000075-1491911889:75805..75969 | Clytia hemisphaerica | exon |
| TCONS_00007284-exon-sc0000075-1491911889:71028..71902 | TCONS_00007284-exon-sc0000075-1491911889:71028..71902 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000075 | supercontig | sc0000075:71028..77804 - |
Blast
The following BLAST results are available for this feature:
|
