TCONS_00007283 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007283
Unique NameTCONS_00007283
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length933

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007283 ID=TCONS_00007283|Name=TCONS_00007283|organism=Clytia hemisphaerica|type=transcript|length=933bp
cAAAATGATTTAAGAAACTATACTATCACGGTCACATTGTACAAGACTTG
ATTGTCAATGAAGCCAGGTAGTCAACTCTACCAATTCATCCTGCAATTAC
TGGACGATGAAAGCAAACGAGAACTTATTCGTTGGGAAAAGCCTAGAAGC
ATGGGTATCTTCCGAATCATCAATAAAGAGCAGGTTTCCCAGCTATGGGG
AGACGCACGCAAAAGGACGATGACGTACGACAGTCTGAGCCGTGGATTAC
GTCATTATTACAGTCAAGGGTTACTGAATGCTGTTAACAAAAAATTGCAT
TATCAATTTACCCAGAAAGCTTTGGACGAGTGGGAAGTTATAAGACATAA
AGATTTAATAGAAGACAGATAAATCTGTCTGGGTCTGTCTTTGtagtaaa
atttcttttgtaaaatatttcatgTTTGAGTGAGCCGTGTGTGTGTCCCT
GAGTGTTAATAGATTTCAGCAGACGTAAGCGTATAGAGAGTACCTTGAag
gctttttccaatttttttgccttttttagaatataattttctttaaattc
aaatcTTCTTCTCTTTTGATAAGGTTAAAATTGCTTCTGAAGTTCTGATT
TggaataaaacaaatttttaaagactttttgcTACCTTTCTATAGACTTT
GCATTCATTTAATAGTAGCAGGGGGGtccaaaaaatggaaattttgatgT
TTAACCATCTTTTTAAACTAATTTTTCATGCTGTTTCCGAATTTGAAATC
CGTTTTTACATATCTCTTACCCCTGGGCGGCTACCGGAGACCCTTTTTTC
GGAAAACCGCCCAAAACCgctaaaagtaattttttttgaaattttccatt
aTGAATAGCtttctaaagtctgttcacgataagtgtgcactcttttttct
tttacctataacttttgaaggaattcttcaatc
Run BLAST on NCBI

transcript from alignment at sc0000075:71028..72577-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007283 ID=TCONS_00007283|Name=TCONS_00007283|organism=Clytia hemisphaerica|type=transcript|length=1550bp|location=Sequence derived from alignment at sc0000075:71028..72577- (Clytia hemisphaerica)
CAAAATGATTTAAGAAACTATACTATCACGGTCACATTGTACAAGACTTG
ATTGTCAAGTAGGTATAGGCTAGCAGCGACGAGAGAAAGTCCTTTTAAGA
AAGAGAGCTTTATGAATGGCTTTCTCTTGTCCAATATGTGCAGTAATTAC
TCTCTTGAAGTTTCGCTGTATTGAAAACGGAGAACAGAGATAACTGAATA
AGGGTTTTATCTACAATAAGATGTAGAGATGCAATCTCCAGCTGTTTGTA
CTTTTATATAATTATGAAAAGATAGGATGCGGGGGTGTAAGACTCGAGAG
CTTGATAATGATGATGATTTTTGGTAACTCCTATGGTACGTGACCTTTCT
CCATGGCTTCTTAACTGACACACAACGTTGTTTCAACTATCATCTAACGT
CCATATAAAATAGGCTAATAAGCGATACGTTGTCTAAAAATTCTAGATCA
ACGCAAATTATTGAATCGCACACGACGTTGCTCCAATTTTCATAGTGATT
AAACGTTAGCATCCTCATAGACAAAATTTTGACGTCATTTCCTTATAAAT
TCATTACCAGCTCACCCAAAGGCGACCGCGCCATTTTCTGTTTCTCTGAT
TCCCTTCTCGAACTTGAATTAGCCAAATAGCCAAACTTGTATTTTATATA
CTTTTTTTCTATTATTTATTTCTAGTGAAGCCAGGTAGTCAACTCTACCA
ATTCATCCTGCAATTACTGGACGATGAAAGCAAACGAGAACTTATTCGTT
GGGAAAAGCCTAGAAGCATGGGTATCTTCCGAATCATCAATAAAGAGCAG
GTTTCCCAGCTATGGGGAGACGCACGCAAAAGGACGATGACGTACGACAG
TCTGAGCCGTGGATTACGTCATTATTACAGTCAAGGGTTACTGAATGCTG
TTAACAAAAAATTGCATTATCAATTTACCCAGAAAGCTTTGGACGAGTGG
GAAGTTATAAGACATAAAGATTTAATAGAAGACAGATAAATCTGTCTGGG
TCTGTCTTTGTAGTAAAATTTCTTTTGTAAAATATTTCATGTTTGAGTGA
GCCGTGTGTGTGTCCCTGAGTGTTAATAGATTTCAGCAGACGTAAGCGTA
TAGAGAGTACCTTGAAGGCTTTTTCCAATTTTTTTGCCTTTTTTAGAATA
TAATTTTCTTTAAATTCAAATCTTCTTCTCTTTTGATAAGGTTAAAATTG
CTTCTGAAGTTCTGATTTGGAATAAAACAAATTTTTAAAGACTTTTTGCT
ACCTTTCTATAGACTTTGCATTCATTTAATAGTAGCAGGGGGGTCCAAAA
AATGGAAATTTTGATGTTTAACCATCTTTTTAAACTAATTTTTCATGCTG
TTTCCGAATTTGAAATCCGTTTTTACATATCTCTTACCCCTGGGCGGCTA
CCGGAGACCCTTTTTTCGGAAAACCGCCCAAAACCGCTAAAAGTAATTTT
TTTTGAAATTTTCCATTATGAATAGCTTTCTAAAGTCTGTTCACGATAAG
TGTGCACTCTTTTTTCTTTTACCTATAACTTTTGAAGGAATTCTTCAATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004090XLOC_004090Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007283-exon-sc0000075-1575043694:72520..72577TCONS_00007283-exon-sc0000075-1575043694:72520..72577Clytia hemisphaericaexon
TCONS_00007283-exon-sc0000075-1575043694:71028..71902TCONS_00007283-exon-sc0000075-1575043694:71028..71902Clytia hemisphaericaexon
TCONS_00007283-exon-sc0000075-1510915933:72520..72577TCONS_00007283-exon-sc0000075-1510915933:72520..72577Clytia hemisphaericaexon
TCONS_00007283-exon-sc0000075-1510915933:71028..71902TCONS_00007283-exon-sc0000075-1510915933:71028..71902Clytia hemisphaericaexon
TCONS_00007283-exon-sc0000075-1491911889:72520..72577TCONS_00007283-exon-sc0000075-1491911889:72520..72577Clytia hemisphaericaexon
TCONS_00007283-exon-sc0000075-1491911889:71028..71902TCONS_00007283-exon-sc0000075-1491911889:71028..71902Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000075supercontigsc0000075:71028..72577 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.56756	0.285562	5.91463	6.50815	0	0.186245	0	0.165001	0.0861805	0	0	0.177115	4.84814	5.68583	0.797703	0.0912182	0.726226	0.407903	0.576368	1.34947	0.356094	0.862648	0.731617	0	0	0	0.00146328	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007283 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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