|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007282 ID=TCONS_00007282|Name=TCONS_00007282|organism=Clytia hemisphaerica|type=transcript|length=1838bp
aaagttttcataaaaaaaaagacaaacaaGATGTGCAATCTCACAAAAGA
CACAATTGCATTCGTTTTGATTCTACTCGTTGCATTGCTGGTCATGTTTG
ATCCAAACAACAGCAAAATCATACCAACAATTTCCAATATTGGATCATTT
GGCATTATAATTAGTACCATTTACTCGATGTTCTACTGGGTATACCCACC
GCCAAAGTGTGAAGACAAAGAAGGGTGTCAATTCATCGTTAAAAGTGCAG
TTTACGGTGAAAAGAATGTCAGTGGTACATTTGTAGATTTAGCATTACCG
TTTTATAAGACACCATTAGATCTGGAGAGCTACCGTCAAGGATTGACTTG
GAGGTACTACAAGACAAGCAGCATAGGGGAAGATACTGGTAATGTTGAAT
TACATAAAGAAAAGAGAGAATTGCGGTACGGAAAAGCAAGCGTGTTTTTA
GAAGAAGCGATAAAGGGCGATGAAAAAAAGGCTCAACAACAGAGAGTAAA
TGGTCTTGAAATGGATGAACTTAAGCGTGAGAGTAGAGCTAGTAGAGAAC
AAATCGGAACAAAAACAGTCGCCTTAGGATCCGAAGACGAAATTTATTAT
ACTGGAAATATGGGGCTATTTGCTGCAGTTCTAGAAGCCTATAACCATCA
TTGGAATCTTAGGATTTCTCCAGATGATTTTTGGCTCCCGATCACCAGAA
GAATAGCAAGTCTCATTGATGACAACTCTGGCAAAGAAACTGTTCGAAAA
TTCTTTGTGGATCATATTGGTAAAGAGAAAATTATTGTTAAAACAGGGGC
TGACTCAATTTATGATGTGCCTTAtcaacatatttttaaacaattttcga
AACAAATTGGAAAAAGAATCAAGGTACCAGATTATGCTGAAAATATGATA
GCTAATTTTACCACAAGCACACCAGAGCTGCAGATTGTATCTTCGATCAC
TTTGATGTCATCACTCcaagaatattttgaatatgAATTACATTTCATTT
GTGGTATCAAAGCTGTAGAGATGCTGGGAACTTTCAAAGATTGGGAACAA
TTGcaacaaaaatttgataggttaATTGAAATCTTAGAACCTATTAAACA
AGATCTTGCATCAACGGGCGGGTTTGATATGACGTATTGGATATCATCCG
TTAAAAAGACTTTGGGGAATTTGGTATCTACGTACCGGGGAAGACCGGAT
ATTGTTTGGTGGAGTAAAATCATGGACCATGAAGTCAAATATGGATCTGG
TAGTTCTCATGTCTACTCTGGATGGATTGTTGAGTTTCTACAAGGGAAAA
TCAATGTTGATGGCCTATCAGAGTTTTCAACTGGATTATCAGTGGTACCA
ATGTTACTTGTAAATGGAAGAATCAAAAGCATGTCTCATTTAGTTGGAGG
AATGCTTGGTTACACCGTTCATGGCGGCAATGAAACCTTAAATGGCGTTC
CCTCGATACGTCCATTTCAAGGATGGGCGATGCTGCTAAAAGAAGATTGT
CCATTTAGAAAAGAtcgaaaaacaaaatagaaaaatagggCGTCTTGGCC
GCTGGACCTACAATTGCCAAAGAACACCGAAAATTTATCTTGATAATAAA
TCTTGGCAAGAACTTTTTACcaaaaaccaaaaccaaaagtGAACAATTAG
ATTTATCTATTTTGTGAGTGGAATAAAGTTGCCTGGACTTGCTCAAAAGA
TCGATATTAAAAAAACACCCTCAAAGGCAGCTTGTAAAGTATTTAATCTT
TGCTTTTGAGTGAAATTCGTTGTTTCTAGACTAAGTAAGGAAGGTAAAAA
ATCAAAGGAATAAATTTGAAAGAAGATTTcgattcctg Run BLAST on NCBI transcript from alignment at sc0000075:58560..61370- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007282 ID=TCONS_00007282|Name=TCONS_00007282|organism=Clytia hemisphaerica|type=transcript|length=2811bp|location=Sequence derived from alignment at sc0000075:58560..61370- (Clytia hemisphaerica)
AAAGTTTTCATAAAAAAAAAGACAAACAAGATGTGCAATCTCACAAAAGA
CACAATTGCATTCGTTTTGATTCTACTCGTTGCATTGCTGGTCATGTTTG
ATCCAAACAACAGCAAAATCATACCAACAATTTCCAATATTGGATCATTT
GGCATTATAATTAGTACCATTTACTCGATGTTCTACTGGGTATACCCACC
GCCAAAGTGTGAAGACAAAGAAGGGTGTCAATTCATCGTTAAAAGTGCAG
TTTACGGTGAAAAGAATGTCAGTGGTACATTTGTAGATTTAGCATTACCG
TTTTATAAGACACCATTAGATCTGGAGAGCTACCGTCAAGGATTGACTTG
GAGGTACTACAAGACAAGCAGCATAGGGGAAGATACTGGTAATGTTGAAT
TACATAAAGAAAAGAGAGAATTGCGGTACGGAAAAGCAAGCGTGTTTTTA
GAAGAAGCGATAAAGGGCGATGAAAAAAAGGCTCAACAACAGAGAGTAAA
TGGTCTTGAAATGGATGAACTTAAGCGTGAGAGTAGAGCTAGTAGAGAAC
AAATCGGAACAAAAACAGTCGCCTTAGGATCCGAAGACGAAATTTATTAT
ACTGGAAATATGGGGCTATTTGCTGCAGTTCTAGAAGCCTATAACCATCA
TTGGAATCTTAGGATTTCTCCAGATGATTTTTGGCTCCCGATCACCAGAA
GAATAGCAAGTCTCATTGATGACAACTCTGGCAAAGAAACTGTTCGAAAA
TTCTTTGTGGATCATATTGGTAAAGAGAAAATTATTGTTAAAACAGGGGC
TGACTCAATTTATGATGTGCCTTATCAACATATTTTTAAACAATTTTCGA
AACAAATTGGAAAAAGAATCAAGGTACCAGATTATGCTGAAAATATGATA
GCTAATTTTACCACAAGCACACCAGAGCTGCAGATTGTATCTTCGATCAC
TTTGATGTCATCACTCCAAGAATATTTTGAATATGAATTACATTTCATTT
GTGGTATCAAAGCTGTAGAGATGCTGGGAACTTTCAAAGATTGGGAACAA
TTGCAACAAAAATTTGATAGGTTAATTGAAATCTTAGAACCTATTAAACA
AGATCTTGCATCAACGGGCGGGTTTGATATGACGTATTGGATATCATCCG
TTAAAAAGACTTTGGGGAATTTGGTATCTACGTACCGGGGAAGACCGGAT
ATTGTTTGGTGGAGTAAAATCATGGACCATGAAGTCAAATATGGATCTGG
TAGTTCTCATGTCTACTCTGGATGGATTGTTGAGTTTCTACAAGGTATAA
TACTACTTCTAAGAATTTAACGTGGAAAAGGCAAAAGAGGGGGGGGGGCA
GGTGTGGAGCCGGTCGGCTGATACGTTTGTTCACTTTCGCGTCACAGGAT
AACTTTATTAAATTTTTTTAATCGTGCATCGTCATCGGTGATACAGCACG
AGTTTTTAAGAAAGCATTAGCATTCTTAGCATGCTAAATTAAAGTATTTT
CTCTCTGGTCAAACCATCACCTGGCCCTTGATTTGAAATTTATCCTTCAT
GTAAAAGATTGGAAAGGTCGAAGCTAGCGAGAATAAAGTCACAAATTAAA
TTAAAACCAAAATTAGCGCGTGAACGTGAAAACGGCTTTTTTCACGTGGC
GAAAAGTTGTGCGTGAATACGTAGATGGAGGGTCGACTGGGGGGACCCCC
AGCTCTTATAAAATGGTTCTTATAAAAAGCGTGTAGATTACTTGATATCT
TTGGTTTTTGGTTTCATCAGGTTCTAACTTATGTGATAATGAAGTTAATA
CACAAAAAAGCTCCTGTATTTTAGAGATGACAAAAAGTACCTTTGAAAGT
GGCATTTCTATGGCCTTTTCTATCTATTGCTTTTTCTATTTTAATAAGTC
TGGATACATCTTTATTTGTAGGGAAAATCAATGTTGATGGCCTATCAGAG
TTTTCAACTGGATTATCAGTGGTACCAATGTTACTTGTAAATGGAAGAAT
CAAAAGCATGTCTCATTTAGTTGGAGGTACGCCACGGGACTCTTGTCTCT
CAAAAAGGTTGGGTACTTAGGTAAAATTGGCATTAAAAAATCCGAAACAA
AATTTTAGTCCCTTCAAGAGTCGGATTTCCTTTCGGATTTTTGGCTTAAT
TTTATCCTACTTTTTTTAAGAACAAACAGCTAAATCGCCAAAGTACAATT
TCTTTTGGACATATGCAGCATTGATTGGTCATGAAATTAGATTTTCCTTT
TTGTATTCGTTTATACAGCTATAATTTGCAAGTTTGGTGTAAATCTGCGC
TTTTGAATAATAAATAAAAACTTTGTATCAAGCAAGATGGCTTAAAATAT
GTTTATCTGATTCCTTTTTTAGGAATGCTTGGTTACACCGTTCATGGCGG
CAATGAAACCTTAAATGGCGTTCCCTCGATACGTCCATTTCAAGGATGGG
CGATGCTGCTAAAAGAAGATTGTCCATTTAGAAAAGATCGAAAAACAAAA
TAGAAAAATAGGGCGTCTTGGCCGCTGGACCTACAATTGCCAAAGAACAC
CGAAAATTTATCTTGATAATAAATCTTGGCAAGAACTTTTTACCAAAAAC
CAAAACCAAAAGTGAACAATTAGATTTATCTATTTTGTGAGTGGAATAAA
GTTGCCTGGACTTGCTCAAAAGATCGATATTAAAAAAACACCCTCAAAGG
CAGCTTGTAAAGTATTTAATCTTTGCTTTTGAGTGAAATTCGTTGTTTCT
AGACTAAGTAAGGAAGGTAAAAAATCAAAGGAATAAATTTGAAAGAAGAT
TTCGATTCCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007282-exon-sc0000075-1575043694:60077..61370 | TCONS_00007282-exon-sc0000075-1575043694:60077..61370 | Clytia hemisphaerica | exon |
| TCONS_00007282-exon-sc0000075-1575043694:59345..59449 | TCONS_00007282-exon-sc0000075-1575043694:59345..59449 | Clytia hemisphaerica | exon |
| TCONS_00007282-exon-sc0000075-1575043694:58560..58998 | TCONS_00007282-exon-sc0000075-1575043694:58560..58998 | Clytia hemisphaerica | exon |
| TCONS_00007282-exon-sc0000075-1510915933:60077..61370 | TCONS_00007282-exon-sc0000075-1510915933:60077..61370 | Clytia hemisphaerica | exon |
| TCONS_00007282-exon-sc0000075-1510915933:59345..59449 | TCONS_00007282-exon-sc0000075-1510915933:59345..59449 | Clytia hemisphaerica | exon |
| TCONS_00007282-exon-sc0000075-1510915933:58560..58998 | TCONS_00007282-exon-sc0000075-1510915933:58560..58998 | Clytia hemisphaerica | exon |
| TCONS_00007282-exon-sc0000075-1491911889:60077..61370 | TCONS_00007282-exon-sc0000075-1491911889:60077..61370 | Clytia hemisphaerica | exon |
| TCONS_00007282-exon-sc0000075-1491911889:59345..59449 | TCONS_00007282-exon-sc0000075-1491911889:59345..59449 | Clytia hemisphaerica | exon |
| TCONS_00007282-exon-sc0000075-1491911889:58560..58998 | TCONS_00007282-exon-sc0000075-1491911889:58560..58998 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000075 | supercontig | sc0000075:58560..61370 - |
Blast
The following BLAST results are available for this feature:
|
