TCONS_00007276 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007276
Unique NameTCONS_00007276
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1168

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007276 ID=TCONS_00007276|Name=TCONS_00007276|organism=Clytia hemisphaerica|type=transcript|length=1168bp
CATCTCTGTTGCGGCAAAACGTTTAAGAGGGGTTATTGGTTTTTATAGTC
CGACATATACATATCTGATAATGTTCTAAGAGAAATATCCTCAAAAAGgt
gaaatcttattggctcatttagctatagaaattagatgagacgagattca
ttgtttctggtGTTGAAATTCTAACAACAGCCATGAGACCGAGGAACACG
ACAAAATTCCGTGCAAAAATTTATCTCCATACCAGAGCAACAATGTCATC
ACCTAACGTTGGTAAAGATGGTATCAGGCTACCAGATGTCGAACCTCTAA
AACATTGGAGTATCATAATACATTACATCGATGTTGATGCTGATGAGGAG
TTGCCAATGCTCTCTATCATTGATGCTAATAGGGATGAAGAAGGTTTTCT
TTTGTGTGATATTAAAATGAAAGTTGGTCAAGAAATGGAGACATACTTGG
AGCAAGAATGCGAATCGATGAAACTACTGATGTCCGGAGAAGGTGGCAAT
GTCATAATGGTATCACCTTcagaaataaaagatttttctcATGATTGGAA
TATGAACAGAAAACCTTACAGATGCAACATTATAAGAAACAATACATGCC
AAGAGTTTGTGAAAGCTTTGGCGAGAAAATTGGGTGTTGAAATCCCAGTA
AGAAGTTTTAAAACCGCAGGTGAATATTCAGTATTCGGTATTGGTGCATT
GATTGTTGGCTTAATTGGTATTGCCTTTGTTAGGCGTTAAATTCAAATCG
AACATTTATTCTAACTAGAAAAACAGTTTTGACGTTTCAACGTCTTGAtg
cgaccgtagcatgaaggtagagcatctaGCTACGGTGctcaaggttgtgg
gttcgatctccagccaggtcataccaaagattcccaaaatgagGACCCCt
cagcggacccaaaattcacgccatcacgccaaatttttttccatttcacg
ccatcacgccaaatttttttccatttcacgccatcacgcatgaaaaattt
gattttcacgatcatgccaattttttcgatttcacgccattacgcctaga
aaatttagttttcacgctcatttgctactttaatgggataaactttcgcg
gggattaaatttcgcggatttcgcggatttgggtgtcatccgcgaaaatc
cgcgaaattaaatcccaa
Run BLAST on NCBI

protein sequence of TCONS_00007276-protein

>TCONS_00007276-protein ID=TCONS_00007276-protein|Name=TCONS_00007276-protein|organism=Clytia hemisphaerica|type=polypeptide|length=185bp
MRPRNTTKFRAKIYLHTRATMSSPNVGKDGIRLPDVEPLKHWSIIIHYID
VDADEELPMLSIIDANRDEEGFLLCDIKMKVGQEMETYLEQECESMKLLM
SGEGGNVIMVSPSEIKDFSHDWNMNRKPYRCNIIRNNTCQEFVKALARKL
GVEIPVRSFKTAGEYSVFGIGALIVGLIGIAFVRR
Run BLAST on NCBI

transcript from alignment at sc0000075:709908..712087+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007276 ID=TCONS_00007276|Name=TCONS_00007276|organism=Clytia hemisphaerica|type=transcript|length=2180bp|location=Sequence derived from alignment at sc0000075:709908..712087+ (Clytia hemisphaerica)
CATCTCTGTTGCGGCAAAACGTTTAAGAGGGGTTATTGGTTTTTATAGTC CGACATATACATATCTGATAATGTTCTAAGAGAAATATCCTCAAAAAGGT Ttgtaaagtctgttcacgataagtgtgcactcttttttcttttacatata actcttgaaggaattcttcaatctttataaatttggtatcgttggagaga tatttatgagtggaacaatttgaaataaaaaagtctttaaaaaatttcta aaaacgaagatgaaaataaagaagaaaaaaatgaagatcttgtagaaaag tgctataactttaattttcactggagagattctttaatcttaggaggtca tcactgttaaaaaaattcactaaaatatttattcaatatataaagttatg atacaaaggtaacaagtgattgaccccaaaaaacagcagaaaacagcgtt tttagacgtcaatcagcttataactttgtttgatatcttttgactgaatg attatttttgagaaattttttcatagtgatgacgttcgatgatcagagat tcacttcagtgaaactaatagttatagcacttttctacacgatcttaatt tttttcttcttcattttcatcttcgttttaagaacttttttaaagatttt tttatttcaaattgatccactcactaatatctttccaatgataccaaatt tataaagattgaagaattccttcaaaggttataggtaaaagaaaaaagag tgcacacttatcgtgaatagactttaattctTTATtctcacaaaattgtg aaaaattgtgaaaatatattttcgccTCAAATCAAGTTGAATTCACTTCT GAGATACTTTTTGAACGAGTAACCTTCCAATATTTTCGGGCAATAACACG AGAatcggcgtttgtgtaaaaactacgcgcaggcgttctggatgggaaat aagtggtttcatttcccatccaggagtctcgtctctagcccttcgggctc aTTGCCGTAGCAGGTGCGGGGGGGGgcaagttacgatgtatgcatgctca taatctcatagtcatatatcgtgcattttttaacGAGCTCTTATattctt ttatccataggtgaaatcttattggctcatttagctatagaaattagatg agacgagattcattgtttctggtGTTGAAATTCTAACAACAGCCATGAGA CCGAGGAACACGACAAAATTCCGTGCAAAAATTTATCTCCATACCAGAGC AACAATGTCATCACCTAACGTTGGTAAAGATGGTATCAGGCTACCAGATG TCGAACCTCTAAAACATTGGAGTATCATAATACATTACATCGATGTTGAT GCTGATGAGGAGTTGCCAATGCTCTCTATCATTGATGCTAATAGGGATGA AGAAGGTTTTCTTTTGTGTGATATTAAAATGAAAGTTGGTCAAGAAATGG AGACATACTTGGAGCAAGAATGCGAATCGATGAAACTACTGATGTCCGGA GAAGGTGGCAATGTCATAATGGTATCACCTTcagaaataaaagatttttc tcATGATTGGAATATGAACAGAAAACCTTACAGATGCAACATTATAAGAA ACAATACATGCCAAGAGTTTGTGAAAGCTTTGGCGAGAAAATTGGGTGTT GAAATCCCAGTAAGAAGTTTTAAAACCGCAGGTGAATATTCAGTATTCGG TATTGGTGCATTGATTGTTGGCTTAATTGGTATTGCCTTTGTTAGGCGTT AAATTCAAATCGAACATTTATTCTAACTAGAAAAACAGTTTTGACGTTTC AACGTCTTGAtgcgaccgtagcatgaaggtagagcatctaGCTACGGTGc tcaaggttgtgggttcgatctccagccaggtcataccaaagattcccaaa atgagGACCCCtcagcggacccaaaattcacgccatcacgccaaattttt ttccatttcacgccatcacgccaaatttttttccatttcacgccatcacg catgaaaaatttgattttcacgatcatgccaattttttcgatttcacgcc attacgcctagaaaatttagttttcacgctcatttgctactttaatggga taaactttcgcggggattaaatttcgcggatttcgcggatttgggtgtca tccgcgaaaatccgcgaaattaaatcccaa

Coding sequence (CDS) from alignment at sc0000075:709908..712087+

>TCONS_00007276 ID=TCONS_00007276|Name=TCONS_00007276|organism=Clytia hemisphaerica|type=CDS|length=558bp|location=Sequence derived from alignment at sc0000075:709908..712087+ (Clytia hemisphaerica)
ATGAGACCGAGGAACACGACAAAATTCCGTGCAAAAATTTATCTCCATAC
CAGAGCAACAATGTCATCACCTAACGTTGGTAAAGATGGTATCAGGCTAC
CAGATGTCGAACCTCTAAAACATTGGAGTATCATAATACATTACATCGAT
GTTGATGCTGATGAGGAGTTGCCAATGCTCTCTATCATTGATGCTAATAG
GGATGAAGAAGGTTTTCTTTTGTGTGATATTAAAATGAAAGTTGGTCAAG
AAATGGAGACATACTTGGAGCAAGAATGCGAATCGATGAAACTACTGATG
TCCGGAGAAGGTGGCAATGTCATAATGGTATCACCTTcagaaataaaaga
tttttctcATGATTGGAATATGAACAGAAAACCTTACAGATGCAACATTA
TAAGAAACAATACATGCCAAGAGTTTGTGAAAGCTTTGGCGAGAAAATTG
GGTGTTGAAATCCCAGTAAGAAGTTTTAAAACCGCAGGTGAATATTCAGT
ATTCGGTATTGGTGCATTGATTGTTGGCTTAATTGGTATTGCCTTTGTTA
GGCGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004086XLOC_004086Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007276-proteinTCONS_00007276-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007276-exon-sc0000075-1491911889:709908..710005TCONS_00007276-exon-sc0000075-1491911889:709908..710005Clytia hemisphaericaexon
TCONS_00007276-exon-sc0000075-1510915933:709908..710005TCONS_00007276-exon-sc0000075-1510915933:709908..710005Clytia hemisphaericaexon
TCONS_00007276-exon-sc0000075-1575043694:709908..710005TCONS_00007276-exon-sc0000075-1575043694:709908..710005Clytia hemisphaericaexon
TCONS_00007276-exon-sc0000075-1491911889:711018..712087TCONS_00007276-exon-sc0000075-1491911889:711018..712087Clytia hemisphaericaexon
TCONS_00007276-exon-sc0000075-1510915933:711018..712087TCONS_00007276-exon-sc0000075-1510915933:711018..712087Clytia hemisphaericaexon
TCONS_00007276-exon-sc0000075-1575043694:711018..712087TCONS_00007276-exon-sc0000075-1575043694:711018..712087Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000075supercontigsc0000075:709908..712087 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.37242 0.546718 0.605089 0.403991 0.101862 0.157823 1.57517 1.02452 2.7106 3.09496 1.52237 2.47059 2.99035 2.25274 2.88463 1.772 1.4185 1.65309 6.44103 13.5607 1.73784 1.78602 3.58201 4.49441 5.70469 4.2939 12.4663 9.71044 0.666432 0.801844
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007276 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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