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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007276 ID=TCONS_00007276|Name=TCONS_00007276|organism=Clytia hemisphaerica|type=transcript|length=1168bp
CATCTCTGTTGCGGCAAAACGTTTAAGAGGGGTTATTGGTTTTTATAGTC
CGACATATACATATCTGATAATGTTCTAAGAGAAATATCCTCAAAAAGgt
gaaatcttattggctcatttagctatagaaattagatgagacgagattca
ttgtttctggtGTTGAAATTCTAACAACAGCCATGAGACCGAGGAACACG
ACAAAATTCCGTGCAAAAATTTATCTCCATACCAGAGCAACAATGTCATC
ACCTAACGTTGGTAAAGATGGTATCAGGCTACCAGATGTCGAACCTCTAA
AACATTGGAGTATCATAATACATTACATCGATGTTGATGCTGATGAGGAG
TTGCCAATGCTCTCTATCATTGATGCTAATAGGGATGAAGAAGGTTTTCT
TTTGTGTGATATTAAAATGAAAGTTGGTCAAGAAATGGAGACATACTTGG
AGCAAGAATGCGAATCGATGAAACTACTGATGTCCGGAGAAGGTGGCAAT
GTCATAATGGTATCACCTTcagaaataaaagatttttctcATGATTGGAA
TATGAACAGAAAACCTTACAGATGCAACATTATAAGAAACAATACATGCC
AAGAGTTTGTGAAAGCTTTGGCGAGAAAATTGGGTGTTGAAATCCCAGTA
AGAAGTTTTAAAACCGCAGGTGAATATTCAGTATTCGGTATTGGTGCATT
GATTGTTGGCTTAATTGGTATTGCCTTTGTTAGGCGTTAAATTCAAATCG
AACATTTATTCTAACTAGAAAAACAGTTTTGACGTTTCAACGTCTTGAtg
cgaccgtagcatgaaggtagagcatctaGCTACGGTGctcaaggttgtgg
gttcgatctccagccaggtcataccaaagattcccaaaatgagGACCCCt
cagcggacccaaaattcacgccatcacgccaaatttttttccatttcacg
ccatcacgccaaatttttttccatttcacgccatcacgcatgaaaaattt
gattttcacgatcatgccaattttttcgatttcacgccattacgcctaga
aaatttagttttcacgctcatttgctactttaatgggataaactttcgcg
gggattaaatttcgcggatttcgcggatttgggtgtcatccgcgaaaatc
cgcgaaattaaatcccaa Run BLAST on NCBI protein sequence of TCONS_00007276-protein >TCONS_00007276-protein ID=TCONS_00007276-protein|Name=TCONS_00007276-protein|organism=Clytia hemisphaerica|type=polypeptide|length=185bp
MRPRNTTKFRAKIYLHTRATMSSPNVGKDGIRLPDVEPLKHWSIIIHYID
VDADEELPMLSIIDANRDEEGFLLCDIKMKVGQEMETYLEQECESMKLLM
SGEGGNVIMVSPSEIKDFSHDWNMNRKPYRCNIIRNNTCQEFVKALARKL
GVEIPVRSFKTAGEYSVFGIGALIVGLIGIAFVRR Run BLAST on NCBI transcript from alignment at sc0000075:709908..712087+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007276 ID=TCONS_00007276|Name=TCONS_00007276|organism=Clytia hemisphaerica|type=transcript|length=2180bp|location=Sequence derived from alignment at sc0000075:709908..712087+ (Clytia hemisphaerica)
CATCTCTGTTGCGGCAAAACGTTTAAGAGGGGTTATTGGTTTTTATAGTC
CGACATATACATATCTGATAATGTTCTAAGAGAAATATCCTCAAAAAGGT
Ttgtaaagtctgttcacgataagtgtgcactcttttttcttttacatata
actcttgaaggaattcttcaatctttataaatttggtatcgttggagaga
tatttatgagtggaacaatttgaaataaaaaagtctttaaaaaatttcta
aaaacgaagatgaaaataaagaagaaaaaaatgaagatcttgtagaaaag
tgctataactttaattttcactggagagattctttaatcttaggaggtca
tcactgttaaaaaaattcactaaaatatttattcaatatataaagttatg
atacaaaggtaacaagtgattgaccccaaaaaacagcagaaaacagcgtt
tttagacgtcaatcagcttataactttgtttgatatcttttgactgaatg
attatttttgagaaattttttcatagtgatgacgttcgatgatcagagat
tcacttcagtgaaactaatagttatagcacttttctacacgatcttaatt
tttttcttcttcattttcatcttcgttttaagaacttttttaaagatttt
tttatttcaaattgatccactcactaatatctttccaatgataccaaatt
tataaagattgaagaattccttcaaaggttataggtaaaagaaaaaagag
tgcacacttatcgtgaatagactttaattctTTATtctcacaaaattgtg
aaaaattgtgaaaatatattttcgccTCAAATCAAGTTGAATTCACTTCT
GAGATACTTTTTGAACGAGTAACCTTCCAATATTTTCGGGCAATAACACG
AGAatcggcgtttgtgtaaaaactacgcgcaggcgttctggatgggaaat
aagtggtttcatttcccatccaggagtctcgtctctagcccttcgggctc
aTTGCCGTAGCAGGTGCGGGGGGGGgcaagttacgatgtatgcatgctca
taatctcatagtcatatatcgtgcattttttaacGAGCTCTTATattctt
ttatccataggtgaaatcttattggctcatttagctatagaaattagatg
agacgagattcattgtttctggtGTTGAAATTCTAACAACAGCCATGAGA
CCGAGGAACACGACAAAATTCCGTGCAAAAATTTATCTCCATACCAGAGC
AACAATGTCATCACCTAACGTTGGTAAAGATGGTATCAGGCTACCAGATG
TCGAACCTCTAAAACATTGGAGTATCATAATACATTACATCGATGTTGAT
GCTGATGAGGAGTTGCCAATGCTCTCTATCATTGATGCTAATAGGGATGA
AGAAGGTTTTCTTTTGTGTGATATTAAAATGAAAGTTGGTCAAGAAATGG
AGACATACTTGGAGCAAGAATGCGAATCGATGAAACTACTGATGTCCGGA
GAAGGTGGCAATGTCATAATGGTATCACCTTcagaaataaaagatttttc
tcATGATTGGAATATGAACAGAAAACCTTACAGATGCAACATTATAAGAA
ACAATACATGCCAAGAGTTTGTGAAAGCTTTGGCGAGAAAATTGGGTGTT
GAAATCCCAGTAAGAAGTTTTAAAACCGCAGGTGAATATTCAGTATTCGG
TATTGGTGCATTGATTGTTGGCTTAATTGGTATTGCCTTTGTTAGGCGTT
AAATTCAAATCGAACATTTATTCTAACTAGAAAAACAGTTTTGACGTTTC
AACGTCTTGAtgcgaccgtagcatgaaggtagagcatctaGCTACGGTGc
tcaaggttgtgggttcgatctccagccaggtcataccaaagattcccaaa
atgagGACCCCtcagcggacccaaaattcacgccatcacgccaaattttt
ttccatttcacgccatcacgccaaatttttttccatttcacgccatcacg
catgaaaaatttgattttcacgatcatgccaattttttcgatttcacgcc
attacgcctagaaaatttagttttcacgctcatttgctactttaatggga
taaactttcgcggggattaaatttcgcggatttcgcggatttgggtgtca
tccgcgaaaatccgcgaaattaaatcccaa Coding sequence (CDS) from alignment at sc0000075:709908..712087+ >TCONS_00007276 ID=TCONS_00007276|Name=TCONS_00007276|organism=Clytia hemisphaerica|type=CDS|length=558bp|location=Sequence derived from alignment at sc0000075:709908..712087+ (Clytia hemisphaerica)
ATGAGACCGAGGAACACGACAAAATTCCGTGCAAAAATTTATCTCCATAC
CAGAGCAACAATGTCATCACCTAACGTTGGTAAAGATGGTATCAGGCTAC
CAGATGTCGAACCTCTAAAACATTGGAGTATCATAATACATTACATCGAT
GTTGATGCTGATGAGGAGTTGCCAATGCTCTCTATCATTGATGCTAATAG
GGATGAAGAAGGTTTTCTTTTGTGTGATATTAAAATGAAAGTTGGTCAAG
AAATGGAGACATACTTGGAGCAAGAATGCGAATCGATGAAACTACTGATG
TCCGGAGAAGGTGGCAATGTCATAATGGTATCACCTTcagaaataaaaga
tttttctcATGATTGGAATATGAACAGAAAACCTTACAGATGCAACATTA
TAAGAAACAATACATGCCAAGAGTTTGTGAAAGCTTTGGCGAGAAAATTG
GGTGTTGAAATCCCAGTAAGAAGTTTTAAAACCGCAGGTGAATATTCAGT
ATTCGGTATTGGTGCATTGATTGTTGGCTTAATTGGTATTGCCTTTGTTA
GGCGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007276-exon-sc0000075-1491911889:709908..710005 | TCONS_00007276-exon-sc0000075-1491911889:709908..710005 | Clytia hemisphaerica | exon |
| TCONS_00007276-exon-sc0000075-1510915933:709908..710005 | TCONS_00007276-exon-sc0000075-1510915933:709908..710005 | Clytia hemisphaerica | exon |
| TCONS_00007276-exon-sc0000075-1575043694:709908..710005 | TCONS_00007276-exon-sc0000075-1575043694:709908..710005 | Clytia hemisphaerica | exon |
| TCONS_00007276-exon-sc0000075-1491911889:711018..712087 | TCONS_00007276-exon-sc0000075-1491911889:711018..712087 | Clytia hemisphaerica | exon |
| TCONS_00007276-exon-sc0000075-1510915933:711018..712087 | TCONS_00007276-exon-sc0000075-1510915933:711018..712087 | Clytia hemisphaerica | exon |
| TCONS_00007276-exon-sc0000075-1575043694:711018..712087 | TCONS_00007276-exon-sc0000075-1575043694:711018..712087 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000075 | supercontig | sc0000075:709908..712087 + |
Blast
The following BLAST results are available for this feature:
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