|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007274 ID=TCONS_00007274|Name=TCONS_00007274|organism=Clytia hemisphaerica|type=transcript|length=4528bpRun BLAST on NCBI protein sequence of TCONS_00007274-protein >TCONS_00007274-protein ID=TCONS_00007274-protein|Name=TCONS_00007274-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1053bp MEEKLTIVEEDLIKLIEDYLETRDYHVTLRTLERESSITNCDYSDVVLFVRun BLAST on NCBI transcript from alignment at sc0000075:685065..699053+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007274 ID=TCONS_00007274|Name=TCONS_00007274|organism=Clytia hemisphaerica|type=transcript|length=13989bp|location=Sequence derived from alignment at sc0000075:685065..699053+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000075:685065..699053+ >TCONS_00007274 ID=TCONS_00007274|Name=TCONS_00007274|organism=Clytia hemisphaerica|type=CDS|length=28458bp|location=Sequence derived from alignment at sc0000075:685065..699053+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00007274 vs. Swiss-Prot (Human)
Match: WDR47 (WD repeat-containing protein 47 OS=Homo sapiens GN=WDR47 PE=1 SV=1) HSP 1 Score: 273.092 bits (697), Expect = 1.230e-75 Identity = 144/325 (44.31%), Postives = 198/325 (60.92%), Query Frame = 2
Query: 2291 QYNPIAMLEDGQAVRSVCFHPSGQLHAIGANSKIFRICKTTTVSRPESASRNGGVSTMQVVFSRNKYHRGSIYCMSWDPEGRFIATGSNDKTIKLIQFDPHNYTQIGDDTEFNIHSGTVRELAFV--PNRNG-YLISGGAGSGSVNITDVNAQKVVGTFDGHSGNILTVYVGEAGDLVATGGSDNTLRLWDLRSQRCIDVIVV----GESSPASVALSGQNSYVASGQEDGSILLYDITAGRTLHTMRLHKNDCRSVRFSPDSNYLMTASYDASISLMHIRADLEWNPPRHYSVAQHVDKVIQCRWHPHENLLLSSSADRTSILW 3244
Q+ I +LED QAVR+V FHP+G L+A+G+NSK R+C V P S + V F RNK+H+GSIYC++W P G+ +ATGSNDK +K++ F+ G D EF++H GT+R+LAF+ P G LIS GAG ++ TD + + GH+G+IL +Y +G ++A+G D T+R WDLR C+ V+ S+ ASVA+ +A+GQED S +LYDI GR + + H +D RSVRFSP ++YL+T SYD I + ++ DL P V +H DKVIQCRWH + LSSSADRT LW
Sbjct: 596 QFVCINILEDTQAVRAVAFHPAGGLYAVGSNSKTLRVCAYPDVIDP---SAHETPKQPVVRFKRNKHHKGSIYCVAWSPCGQLLATGSNDKYVKVLPFNAETCNATGPDLEFSMHDGTIRDLAFMEGPESGGAILISAGAGDCNIYTTDCQRGQGLHALSGHTGHILALYTW-SGWMIASGSQDKTVRFWDLRVPSCVRVVGTTFHGTGSAVASVAVDPSGRLLATGQEDSSCMLYDIRGGRMVQSYHPHSSDVRSVRFSPGAHYLLTGSYDMKIKVTDLQGDLTKQLPI-MVVGEHKDKVIQCRWHTQDLSFLSSSADRTVTLW 915 HSP 2 Score: 150.214 bits (378), Expect = 1.766e-36 Identity = 98/260 (37.69%), Postives = 157/260 (60.38%), Query Frame = 2
Query: 104 EEKLTIVEEDLIKLIEDYLETRDYHVTLRTLERESSITNCDYSDVVLFVRELVLDGDFDEVLRFGNSLKSIESNEDFDQRRFNYIVLRQKFIELIYKKAHIL---DKQNIE-TVSEVMRTLSKLEKNCESKEEYNNLCWLLTLPDLNAHDEFEDWNLDVSRLKCFNELLNCLSISMPLVKRKTGHKKTASKDRLLELMIKGLLYEKCTSYCH--MVXXXXXXXXXXXXTDLLHSSNDIESSLNLASWILNLPAGVFELPF 865
EE + + E ++IKLI D+L ++ H+++ LE+ES + N +SD +LF+R+L+LDG +DEVL+F ++ +E E FD++RF YI+L+QKF+E + + + Q++E T+ E ++ L LE+ C SK++Y+ LC LLTLP L H EF+DWN +R+ CF E ++ +P ++ + AS +RL +L++KGLLYE C +C + DLL + + L+L SW+ NLP+ VF F
Sbjct: 4 EETVNVKEVEIIKLILDFLNSKKLHISMLALEKESGVINGLFSDDMLFLRQLILDGQWDEVLQF---IQPLECMEKFDKKRFRYIILKQKFLEALCVNNAMSAEDEPQHLEFTMQEAVQCLHALEEYCPSKDDYSKLCLLLTLPRLTNHAEFKDWNPSTARVHCFEEACVMVAEFIPADRKLSEAGFKASNNRLFQLVMKGLLYECCVEFCQSKATGEEITESEVLLGIDLLCGNGCDDLDLSLLSWLQNLPSSVFSCAF 260 The following BLAST results are available for this feature:
BLAST of TCONS_00007274 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.