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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007242 ID=TCONS_00007242|Name=TCONS_00007242|organism=Clytia hemisphaerica|type=transcript|length=403bp
CTCAgttgtttttcttgtttcttatACAAACAGACCCATACAAAGTATAC
AACAATCGCCACGTTGATGCAGAAAGATTCAATCAGAGTGATGGTCGATG
GAAACGCGGCGTGGAGACCAGATGAGACGATAAGGATCGCTGTACCAGAT
TATGAAATCCTTGAGCAATAGAGATGACAGTCAATTTGCTGGTCACTACA
CAAAACAAAGTCATCAAAGACATGAAAATGGTAAAGAGGATCTTAACCAG
AGATGCAAATCTAGATTGTTTGTGATGCCAACGTTCCATATGTGAATCGC
CATCTTTCCGCTCGACCGTGAAACGAGGTAATTGTTCATCTAATCCACCA
TCTGTAGACATTGTAGCTGATTGGTTAAGACAAATAGGTATTTCTTGATT
TAT Run BLAST on NCBI transcript from alignment at sc0000075:20988..28652+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007242 ID=TCONS_00007242|Name=TCONS_00007242|organism=Clytia hemisphaerica|type=transcript|length=7665bp|location=Sequence derived from alignment at sc0000075:20988..28652+ (Clytia hemisphaerica)
CTCAgttgtttttcttgtttcttatACAAACAGACCCATACAAAGTATAC
AACAATCGCCACGTTGATGCAGAAAGATTCAATCAGAGTGATGGTCGATG
GAAACGCGGCGTGGAGACCAGATGAGACGATAAGGATCGCTGTACCAGGT
CTGTAAGAAAAACAATATCTAAGGGACCGTgtacaaatattgttttaatC
GTTTGAGAAAAAATCGTATAGTGAAAAGGTATGAAACGATTTAGTAGCca
agaatttgaagaaaaatcgtTTTCTAAACGATGACTGACAAACTATGAAA
AGGAATTCGTTTTCATTcgtttcaaaatcttgaaaatcgtTTACAATTGT
CTTAAATATCCAGATTTCGTTTTGGTGtactcaaaatcgttttggtaTTC
TCTAAATCGTTTTGGTgttctcaaaatcgttttggtgttctcaaaatcgt
tttggtgttctcaaaatcgttttggtgttctcaaaatcgttttggtgttc
tcaaaatcgttttggtgttctcaaaatcgttttggtgttctcaaaatcgt
tttggtgttctcaaaatcgttttggtgttctcaaaatcgttttggtgttc
tcaaaatcgttttggtgttctcaaaatcgttttgttgttctcaaaatcgt
tttggtgttcTCAAAATCGGTTTGGTGTTCTCAAAATCCTTTTAGGTTTA
TATAGATCGTTCTTTCAAATAGAAAAACGTTCCATCCGAAGGCAAAACGC
TTCAATAAAATGAAATCGTTTTTGTTCGAttaaaatccatcaaaaatcaG
TTCGTGTACCATACAAGGCCAAGTAAAGGTACAAGAGTGGAGAGACTATG
CATAGGTCCATATATAAACTATGTGGACTCTTAATTGTTGGTGTGAAAGT
CCATgctattttgattcccctaccccttagttttccaaaaatgtataacg
agtgctttgactaaaaaagtcgcaTTTTACGTATCCAACATTGAGATAGA
GTACTATATCCGGTAATGTTATTCCAGAATAATACTTTTAGCAACGGGCG
CATCGTAGCATTGACTATTAGCTAGTAATCGTTTAATAGTTTAGATATTT
GTTTAATATTTCAGATATTCGTTTAATATTTCAGATATTCGTTTAATAAG
TTAGATATTCGTTTACTAGTTTAGATATTCGTTTACTAGTTTAGATATTC
GTTTACTAGTTTAGATATTCGTTTAATAGTTTAGATATTCGTTTTAGAGG
TATGATATTCGTTTTAGAGGTAAGAAATTCGTTTTGATAGTTTCAAATTC
GTTTTGATAGTTTCAAATTCGTTTAATTGTTTAGGAGATCGTTTGAACTT
gaagactttcttttcaaatcgtTTTACCACTTTTTGTTCAaagaaaaacg
tttaaaatcgtTCCATAACGTTTCAGCCTGACATTGCTTTAAATTGGTAC
GATTCTTAAACGATTAAAATCATTTGGGAAACGAAAGAAATCGTGTAAAT
TCGTTGAAAAGTGGAACAATATTTGTACACGGTCCCTAATACATTTAAGA
CTTATGGCAAGAGTTGTTTTAATATaaacagtgaaaaaaaatcCCGTGAT
AATGCAGAATACTAGCCATGGATCAgcctaaattgaaagaaaatttgtta
aaaaataaaaagctgaTCCTTTGGATCGCTGTACCGGGCCTGTAAGAAAA
GTAATGGATTTTTAAATGTCATAATTTTGGATTTGGAATAAAGATAGTAA
TAAGAGGGTGAAGAAAATTCTTCTGTGTCAGAGTAATCTCTTGAATGTAA
TCTGAAGAAAAATCGTCTTTTTCCGAAGAATTTTGAAGAGGTTCTGTAAG
GATTTCTACTGTTTAAAACGACAAAGATATAATTATGCACTGAAGAAGAA
GCCAGATGGTGTTGAAGATCAGATCATCATTTAACTAGTTTTCCTAAAAA
TAACCACccacaaaaacaaaatgatttTGCTGGTTTAAAGGGAGATGAAG
CCTCTATAAAGCCGTCATGACAGTACTCGAGGTCACGTGTTTGATTGAGA
AAGATTCTTACCCAATGATAATGGAGACCAACATGATGACTTGATAAACA
ATGAATACTATATTAACATCATCATTACTCATTCGTATTTCTTTTTGACG
TTGAATCAATAACGCTTGATTGGCCATTCTAGATGGACCCCAACGTTTAC
GTTGTTTAAAGAACTCGTTAAATTCTTCTGGACAATACGTAGTGACGGTG
GCTGACGCGCAGTAATCCAAACGCCAACCACGCTCCATCATAAGTGTACA
TAACCAACGATCTTCACCTGGGTATAGGAATCAAAAAGCGTTTTTATTAG
ATGCCATTCGAAGCAGCACCGTCATACTAATTGTATAACGGCTCTGTTGC
GCAAGGCAACGTGAATTTTGCCATGATATATGTTCACAGATGCTTGTGAT
TAGAACAGTTTTAGACTTGTCTTTaggagaagtaacaaagttttTTTAGG
TGGTGACCTTGGAAGATAGACTTGTAGATTAGTAAATTTCGTGCTATTCA
AAAACCGTTAGGCTCTTCAAATTAATCAATTGTTGCTTGAAACTAAATCC
TTACTTAGTACTTAGACTGCCTCAAAATAATATACAGTAGctcaaaaaag
gctgtaacttttgatgaaTTCGAATATACTACTACATAGTATACTTGGAA
TGGAATAATatctaatagaaaaaaaaacttaaaaacttaaaaacttagga
ttcatgatattcatgaagtAAATGTTTCATACAGAAACATCCAAAATAGT
CTGGGCGTTTGCcatattgtttaaattcaaaataagtgCTCCCgtaaaaa
acattacgtcatgaataacACGAATATCAGCGAGAAGAAGGATCCTTACC
CATGTCTTTTCTCAAGAATTCGATTGCTGAACCAACAGATGAAGCATATT
CCGGTAGCACGTCCTCAATCGCACGACATctataaattgaaaaacaaCCG
GGTGAACAGAGTACAGATCCCATCACATGTTCAGCAACCTTCAACAACCA
ACTATCTATCGCATAATCAAACATCTGGTACCAAGCGATTGGGCCTGTTC
CTTTCGGCTTGGTACGGCCACATACAGCGCCAACTGAAGGATCACGAGAC
ATGAAATCCATAAGGGCAGATACATCTTCGGGATGGAATTGGACGTCAGC
ATCAGTTGTGAGGATGTAACTGTAGTCTTGATTTTCTGAAAACGAGATAG
ATTTTCCATGCTTTTATCAGTGTTTTACATATCAGAACCGATGGTGTAAC
TATAACGTATGAAATCTTATGATCTCCTATTTCGATTGACAGAAAAATTT
AATCAAACCTGTACCTGAAAGACAAATGTGTCACTTATGTTCGCCAAAGG
ATACGATGTCAGAGGTATGAAAAAAGTGAACTTGGGAATGACGACCCTAC
CTCTTTCTCTGAAATCCAATATGTATGACATGTACATAACTTGACTCCAT
CGTTTTTTATTCCTTACTTTGAAAGTATCTTTCAAATGTAAGTGAAACGG
TAACCCTCCTGGTAAAGTCCATCTTAACTCCATACCATAAGGTGTCTGAA
GTTTCTTAGCTGAAGCTAATTCAACTTGGATGGTACGTGGCAGCAATGAG
ATTAATTGTAACGCGAACGTCTTTAGAGTCGTGTCACGGACACCGTCATC
AAACCAGATATGACATTCAAACATCCGTCCCTCAGATTTCCGTGCCCGGT
CAATGTCTGCAATGGAGAATAGGAACTGCTCCATCTCGTAGTCAGCTTCG
TGATACATTGTTGTGCAAATATAGACGTGACTTTTCTTGACTAATGATTT
GTAGTTGACGAAATATTCGTTGGTGGCTTCATTCTTCCGGTTCAGCAACA
TATTTTGTTCCAGGAAACTTCCTGAGAATAGATAATTTAATTAATGAGTA
ATATTCTTAAACTTTATTCCCTGTATAGACTCGCTCGTCAATCAGGTTCG
AGTGAGAAGAATGGAAAGTACGATGAAATGCTAATTTATCACTCACTTTA
AACAACTATAAACACCGTATATTTAATTATAGTACCATTGGGTCATCTTT
TTAGTTTAAAGATATTGAAATACGAGTTCAGTTCATATTGTTTAAAAAAG
GATTTAATAGTGATCTTACCATCCCAAGTCGGTACCCAGAATAATGTTGC
TTCTTCAGCCATAACGAAATCTTGACTTTTCCATGCGTAATAAGTAGTAG
CAAAGAATTGACCAAGCCATAGAGCTATGCTTGCCAGCGCTACAATCAAA
CCTCGTTCACTATACAAATGAGCTGAACATTCTGATAACCCAACATAACC
ACATCTACCAGTTAAAACCAGGATAATGCAAACCGGAGTTGCAAGAGTTA
AGGGTATAGCGAAACACAACCGTTGTAGATTGATTGAACAGCTCATCCAA
GAAAGATGATAACCAAAGATGCTAGTCAAAAGATGTAATATNGCTGTAGA
TTGATTGAACAGCTCATCCAAGAAAGATGGTAGCCAAAGATGCTGGTCAA
AAGATGTAATACGAACATTACAAAAAGTGTTGTATCAGAAGTCAAGTAGA
AGAAACCATGGTGGACATGTGTTAAATCAGCTGTTTGGAACACGTATGTG
AAAATGCACATGAAAATTGGGATGGCGATCAACTTCGTGATGCAGTTGAT
CAATGTGGCTTTACCACGAGACGTATTGGTTTGGACAACGACTTTCCGAG
CGTCATCCTGGATATTCGATTTACGTCGCTGGAATTTATCTAACATAGAA
ATGTTTGATTTTCGTCGTTTGTCTTTATCGTAGCTCGAAACGGTTGACGC
TACGGTAGAGTCGGTGTCCGTCGTATCGGCTATGCTATCGCTACGGAAAT
ATCGTACACGGTGCGCGACTGGCAGCTTTTGTTCAGCAAGTGCTTCTTCC
GATATGTCGGACCAAACGTAAGCAAGATCATGATCGATTTGTAGTTTTCT
GATCTCGGGACTCCATCCGATACCGATTAAAATGATAGCGCATGGGATGA
TGATCATCTGCTTGTAATCTTTTCGCTGGTCATATAGCTAGAAAATACga
ttgtaactttttttcaacTGTCTTATCTTTAGTTTTTGGTAATCTTAATC
AGGATATCAAGGATACATTGATCTGGCTTACAGTATCAAACAGATAAAGT
TATTGGTGAATAATTCAACTTCTGCAAAGTTGTCCTCCTATCTAATCTCT
CACCATAAACACCATATCTGTCATGGTTATCGATGTAATTGATGCGAGTT
AAAGTGAAATGtcactaattcgaacttctatcatTTCGAAAATCTTTCTA
TACCCGGTAATTTTCAATCCTTAAACAATCCAAGTCTTTTCACAACTCTc
caaatattttgcaaagtaacttttctttactttacagtgccgtagcaact
ggggggggcaaggggggggccccaataattttttcaaaaatggttatttt
gcaaaatgcaaagtttttcttttttaatttgtcattattgtctttatgtg
catgttttgagtgtatttttaagcaatctagagctcaaattctcaaaatt
tccccctcaggccaaaccatggttggccctcgcggtgtcactaaacttca
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcccccc
ccccccccccaatatgaaaatgcttcctacggcactgttttaaaaaatct
tatatacaccgtttagaggggtgaaataagggtgaaaagtcgaaaatttt
atatttgttatATTTGAGAGTAGTGCTAATATTAGGGTGCCACTTAATAA
AAAAACTCTAACTCCGAACAAAGATGGCTGATATAACTTGTTCCAGGGTA
TGCAAAGGTCAGTGGAGTCAATTGTACTTACCAGATAGAGTATACCGATG
ATTCCaatgatttgaaaaatgaaagcaaTAGAGCTTAGTATAACATTCTG
AATATGGATTTTCCTTCTCTTTTGATACAATCTCTGTGACAGCTCCATTT
CGTCCTCGTCACTCAATGAATTGATTTCCCTGGTGAATTGTGAAATGACA
GGGATGATGAATAAAGCATTCATTAGAATCAAAACAATATCAGTATCCAT
AACATGCATTACCAAACCGACAAGGAATAATGATAAACCAGCAGATTCCA
TAAGTGTACCGATAGCACCCTGAAAGTTGAAAGATGACAAAAACTTGAAG
ATTATTGATTGATATCAACCCATCAATACACATTTTTCTTCTGGTTAGAA
ATTGAGCGACTGGAATCGAGCTAGCCAGGAAGGAACGGCGTCAATATGTC
TGACATTCTCATAGACAAATAATTTAGACGTCATGCCATTGTACATTCGT
TACAATTCTCTCTCAAAACCCGACAATACAGGTAAGGGTTGACTATACAC
TTACGTTTCAAGATTAGCTCTTCTGTTCATAGGGAGGGTTACTTTTACAA
AATTGGTGACTCTCCATGCAAAAAAAGTACTTGGAATGTCAATGCAATCT
TCACTaatagaccagcgtccgagattcagaaaaggccttaaaaatggttt
tcgtagggcaccccttagatcagggcaaatttttgatattatgctcctaa
tggtgtgtagaattgacaaaaaaaatttgcccttcgaagtGACACAATCC
GCTACCTCGGTcgctcggccgctggtctataaAGCATTTTAACTCACCCA
GATAACAGCTGGTTTAGTTGGCCAGGGATGTGTAATCTTTCCGCACGTTT
TCAACAATAATTTCACCAACGTGAAAGCTGATGGGAACATTAAGATGATA
CACAACATAAGGAAGACAACTTCACGCATGCAGACGTCAGCACTTTCGTA
TACAGCGTAATGTGTTGAGTTAGTGATGGTCTTTCCACAAATGAATTTGT
GTGTCGTGTTGAAAGGGTCCTTTAAATCTAAAGaaagatattgtattttt
agatCAATTTAACGTGTTGGCTGGACCGAAATCGTGGCAAACTTTAAAAT
AATTAACCGAGCGAAGCAAGCTCAAAATCTTCGgatattttctctcttta
tgGCCGAAAAATTTTAGGTTGTAAAAATCAAAGGGGCGTAGAAATTAGCA
ATAATAATGTTATTAACATAATCCAATTTCGAGTATGGGATAGCAAATAG
GGAGCTGTCGCTAGAATTCTCAAATGGACCCTTTCAGATGTaaattttct
gcaaaaaatgGACGGAATATAACTTTGCTTTTAAATGTAAACAAGGGGAG
GGGTTTGCAAGTGATCAGATATTTGAAAAGTTCTTCTATACCTTCTTCAT
TTGGTTTTAGATTATGAAATCCTTGAGCAATAGAGATGACAGTCAATTTG
CTGGTCACTACACAAAACAAAGTCATCAAAGACATGAAAATGGTAAAGAG
GATCTTAACCAGAGATGCAAATCTAGATTGTTTGTGATGCCAACGTTCCA
TATGTGAATCGCCATCTTTCCGCTCGACCGTGAAACGAGGTAATTGTTCA
TCTAATCCACCATCTGTAGACATTGTAGCTGATTGGTTAAGACAAATAGG
TATTTCTTGATTTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007242-exon-sc0000075-1491911889:20988..21135 | TCONS_00007242-exon-sc0000075-1491911889:20988..21135 | Clytia hemisphaerica | exon |
| TCONS_00007242-exon-sc0000075-1510915933:20988..21135 | TCONS_00007242-exon-sc0000075-1510915933:20988..21135 | Clytia hemisphaerica | exon |
| TCONS_00007242-exon-sc0000075-1575043694:20988..21135 | TCONS_00007242-exon-sc0000075-1575043694:20988..21135 | Clytia hemisphaerica | exon |
| TCONS_00007242-exon-sc0000075-1491911889:28398..28652 | TCONS_00007242-exon-sc0000075-1491911889:28398..28652 | Clytia hemisphaerica | exon |
| TCONS_00007242-exon-sc0000075-1510915933:28398..28652 | TCONS_00007242-exon-sc0000075-1510915933:28398..28652 | Clytia hemisphaerica | exon |
| TCONS_00007242-exon-sc0000075-1575043694:28398..28652 | TCONS_00007242-exon-sc0000075-1575043694:28398..28652 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000075 | supercontig | sc0000075:20988..28652 + |
Blast
The following BLAST results are available for this feature:
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